Wall clock time and date at job start Tue Mar 31 2020 03:03:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47329 * 2 1
4 4 N 1.46506 * 109.47056 * 240.00605 * 2 1 3
5 5 C 1.34772 * 120.00047 * 84.99776 * 4 2 1
6 6 N 1.34784 * 119.99728 * 179.97438 * 5 4 2
7 7 O 1.21584 * 120.00495 * 0.02562 * 5 4 2
8 8 C 1.50697 * 109.47169 * 120.00318 * 2 1 3
9 9 O 1.21291 * 120.00033 * 120.00293 * 8 2 1
10 10 N 1.34776 * 120.00123 * 299.99767 * 8 2 1
11 11 C 1.46497 * 120.00004 * 179.97438 * 10 8 2
12 12 C 1.53006 * 109.47173 * 180.02562 * 11 10 8
13 13 H 1.09002 * 112.84791 * 45.33545 * 12 11 10
14 14 C 1.53781 * 113.61570 * 176.53083 * 12 11 10
15 15 C 1.53780 * 87.07624 * 139.98161 * 14 12 11
16 16 H 1.09002 * 113.61124 * 89.20642 * 15 14 12
17 17 N 1.46509 * 113.61150 * 220.01703 * 15 14 12
18 18 C 1.36929 * 119.99788 * 205.00735 * 17 15 14
19 19 H 1.08004 * 120.00734 * 359.97438 * 18 17 15
20 20 C 1.38815 * 120.00109 * 180.02562 * 18 17 15
21 21 N 1.31619 * 120.00440 * 179.97438 * 20 18 17
22 22 Si 1.86806 * 119.99647 * 359.97438 * 20 18 17
23 23 H 1.48505 * 109.46866 * 89.99852 * 22 20 18
24 24 H 1.48498 * 109.47157 * 209.99998 * 22 20 18
25 25 H 1.48500 * 109.47233 * 330.00176 * 22 20 18
26 26 C 1.53780 * 113.61448 * 274.14228 * 12 11 10
27 27 H 1.08999 * 109.47037 * 59.99735 * 1 2 3
28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3
29 29 H 1.09002 * 109.47019 * 299.99661 * 1 2 3
30 30 H 0.97000 * 119.99400 * 264.99516 * 4 2 1
31 31 H 0.96997 * 119.99827 * 0.02562 * 6 5 4
32 32 H 0.96996 * 119.99738 * 179.97438 * 6 5 4
33 33 H 0.97002 * 119.99738 * 0.02562 * 10 8 2
34 34 H 1.09006 * 109.47301 * 60.00545 * 11 10 8
35 35 H 1.08996 * 109.47804 * 300.00196 * 11 10 8
36 36 H 1.08994 * 113.60887 * 254.53194 * 14 12 11
37 37 H 1.09002 * 113.61213 * 25.35044 * 14 12 11
38 38 H 0.97000 * 119.99785 * 25.00105 * 17 15 14
39 39 H 0.97006 * 120.00112 * 180.02562 * 21 20 18
40 40 H 1.09000 * 113.61461 * 334.56153 * 26 12 11
41 41 H 1.08995 * 113.61894 * 105.46890 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6905 -1.1963
5 6 2.1470 -0.0181 -2.3572
6 7 2.5968 -0.6533 -3.4576
7 8 1.8583 1.1617 -2.4116
8 6 2.0323 -0.7105 1.2304
9 8 2.7297 -1.6966 1.1191
10 7 1.7068 -0.2501 2.4545
11 6 2.1947 -0.9411 3.6506
12 6 1.6843 -0.2202 4.9000
13 1 0.6271 0.0377 4.8376
14 6 2.0719 -0.9171 6.2149
15 6 2.3274 0.4856 6.7912
16 1 1.4466 0.9370 7.2479
17 7 3.5139 0.5610 7.6473
18 6 3.6018 1.5289 8.6119
19 1 2.7966 2.2370 8.7414
20 6 4.7262 1.6008 9.4227
21 7 4.8110 2.5315 10.3495
22 14 6.1193 0.3766 9.1983
23 1 7.0971 0.9137 8.2181
24 1 6.7961 0.1527 10.5009
25 1 5.5719 -0.9097 8.6972
26 6 2.5784 0.9493 5.3449
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 2.2491 -1.6317 -1.1527
31 1 2.8275 -1.5944 -3.4140
32 1 2.6890 -0.1694 -4.2932
33 1 1.1488 0.5384 2.5436
34 1 3.2847 -0.9415 3.6508
35 1 1.8310 -1.9686 3.6505
36 1 1.2436 -1.4409 6.6919
37 1 2.9707 -1.5287 6.1364
38 1 4.2372 -0.0747 7.5308
39 1 5.5969 2.5819 10.9159
40 1 3.6167 0.8499 5.0285
41 1 2.1585 1.9298 5.1207
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001691090632.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:03:16
Heat of formation + Delta-G solvation = -71.276658 kcal
Electronic energy + Delta-G solvation = -21910.155800 eV
Core-core repulsion = 18438.545980 eV
Total energy + Delta-G solvation = -3471.609819 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 284.164 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.52281 -40.51550 -39.77289 -36.23806 -35.97178 -35.09883 -34.67783 -32.78460
-31.30083 -28.71801 -26.45283 -25.91979 -25.06592 -22.56730 -22.17369 -21.41250
-20.75007 -19.71535 -19.30051 -18.64782 -17.42276 -17.28267 -16.70762 -16.66871
-16.22909 -16.01632 -15.82048 -15.52602 -15.15649 -14.78230 -14.69985 -14.37364
-13.95595 -13.68592 -13.32326 -13.23382 -13.15371 -13.02483 -12.68821 -12.62259
-12.14896 -11.91118 -11.69795 -11.57799 -11.51796 -11.14417 -10.94693 -10.84214
-10.71958 -10.16517 -10.06306 -9.25765 -8.02495 -5.34664 1.37304 1.40154
1.47403 1.48251 1.63477 2.11612 2.31741 2.48044 3.27985 3.49684
3.60400 3.64056 3.75070 3.89170 4.04635 4.11057 4.14363 4.30175
4.40073 4.57221 4.67543 4.77525 4.82100 4.97538 4.99460 5.05972
5.20509 5.24073 5.33144 5.34065 5.42945 5.67669 5.78937 5.81887
6.01881 6.23622 6.45998 6.99850 7.08693 7.11927 7.60078 7.87402
8.04589 9.19061
Molecular weight = 284.16amu
Principal moments of inertia in cm(-1)
A = 0.029909 B = 0.002665 C = 0.002617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 935.941653 B =10503.460773 C =10695.373784
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.145 3.855
3 H 0.109 0.891
4 N -0.724 5.724
5 C 0.704 3.296
6 N -0.847 5.847
7 O -0.639 6.639
8 C 0.512 3.488
9 O -0.575 6.575
10 N -0.706 5.706
11 C 0.138 3.862
12 C -0.096 4.096
13 H 0.122 0.878
14 C -0.135 4.135
15 C 0.144 3.856
16 H 0.077 0.923
17 N -0.745 5.745
18 C -0.230 4.230
19 H 0.059 0.941
20 C -0.068 4.068
21 N -0.985 5.985
22 Si 0.953 3.047
23 H -0.282 1.282
24 H -0.297 1.297
25 H -0.251 1.251
26 C -0.157 4.157
27 H 0.065 0.935
28 H 0.068 0.932
29 H 0.094 0.906
30 H 0.412 0.588
31 H 0.413 0.587
32 H 0.422 0.578
33 H 0.417 0.583
34 H 0.052 0.948
35 H 0.073 0.927
36 H 0.082 0.918
37 H 0.076 0.924
38 H 0.365 0.635
39 H 0.257 0.743
40 H 0.064 0.936
41 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.223 -11.342 -26.787 30.834
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.035 3.965
3 H 0.127 0.873
4 N -0.382 5.382
5 C 0.402 3.598
6 N -0.416 5.416
7 O -0.521 6.521
8 C 0.298 3.702
9 O -0.454 6.454
10 N -0.358 5.358
11 C 0.014 3.986
12 C -0.115 4.115
13 H 0.140 0.860
14 C -0.175 4.175
15 C 0.035 3.965
16 H 0.096 0.904
17 N -0.386 5.386
18 C -0.361 4.361
19 H 0.077 0.923
20 C -0.259 4.259
21 N -0.636 5.636
22 Si 0.781 3.219
23 H -0.208 1.208
24 H -0.224 1.224
25 H -0.175 1.175
26 C -0.198 4.198
27 H 0.084 0.916
28 H 0.087 0.913
29 H 0.113 0.887
30 H 0.249 0.751
31 H 0.244 0.756
32 H 0.256 0.744
33 H 0.255 0.745
34 H 0.070 0.930
35 H 0.092 0.908
36 H 0.101 0.899
37 H 0.095 0.905
38 H 0.198 0.802
39 H 0.066 0.934
40 H 0.082 0.918
41 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -10.066 -10.910 -26.574 30.439
hybrid contribution 1.308 -0.520 0.193 1.421
sum -8.758 -11.430 -26.381 30.055
Atomic orbital electron populations
1.22122 0.91066 1.03570 1.04358 1.20618 0.96757 0.97175 0.81936
0.87297 1.44739 1.71173 1.14605 1.07713 1.16071 0.77937 0.84412
0.81417 1.42777 1.71882 1.15777 1.11170 1.90948 1.59457 1.16215
1.85453 1.20793 0.79666 0.84235 0.85508 1.90689 1.39512 1.28082
1.87153 1.45831 1.52986 1.32301 1.04682 1.21297 0.98420 0.96242
0.82649 1.22480 1.00861 0.96122 0.92081 0.85986 1.23345 1.01891
0.96799 0.95416 1.21992 0.89183 0.96257 0.89071 0.90449 1.42805
1.20091 1.35873 1.39798 1.19135 1.02236 1.06512 1.08244 0.92262
1.25520 1.01244 1.00818 0.98318 1.69883 1.30826 1.37810 1.25036
0.85429 0.79642 0.80123 0.76707 1.20831 1.22375 1.17518 1.23782
0.99238 0.98364 0.98386 0.91563 0.91308 0.88724 0.75089 0.75611
0.74437 0.74540 0.93002 0.90837 0.89914 0.90541 0.80203 0.93443
0.91775 0.91587
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.77 9.38 71.98 0.68 -1.09 16
2 C 0.14 2.33 2.98 44.24 0.13 2.46 16
3 H 0.11 1.96 7.58 -2.39 -0.02 1.94 16
4 N -0.72 -11.59 4.96 -461.41 -2.29 -13.88 16
5 C 0.70 12.97 8.80 179.05 1.58 14.55 16
6 N -0.85 -8.03 8.88 -184.74 -1.64 -9.67 16
7 O -0.64 -17.32 16.84 -3.98 -0.07 -17.39 16
8 C 0.51 9.80 7.22 87.66 0.63 10.43 16
9 O -0.57 -14.93 15.84 -3.06 -0.05 -14.97 16
10 N -0.71 -11.21 5.45 -463.05 -2.52 -13.73 16
11 C 0.14 2.65 5.50 86.38 0.47 3.13 16
12 C -0.10 -1.89 3.75 -10.27 -0.04 -1.93 16
13 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16
14 C -0.14 -3.39 7.40 31.12 0.23 -3.16 16
15 C 0.14 4.91 4.48 45.57 0.20 5.12 16
16 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16
17 N -0.74 -33.71 5.21 -320.16 -1.67 -35.38 16
18 C -0.23 -12.95 10.45 84.04 0.88 -12.07 16
19 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16
20 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16
21 N -0.98 -63.29 13.97 21.65 0.30 -62.99 16
22 Si 0.95 45.65 27.74 68.60 1.90 47.55 16
23 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16
24 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16
25 H -0.25 -10.76 6.52 99.48 0.65 -10.12 16
26 C -0.16 -4.37 7.45 31.18 0.23 -4.13 16
27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
29 H 0.09 0.69 7.56 -2.39 -0.02 0.67 16
30 H 0.41 5.69 7.80 -92.71 -0.72 4.97 16
31 H 0.41 1.50 8.84 -92.71 -0.82 0.68 16
32 H 0.42 3.12 8.93 -92.71 -0.83 2.29 16
33 H 0.42 4.45 7.89 -92.71 -0.73 3.71 16
34 H 0.05 1.23 7.88 -2.38 -0.02 1.21 16
35 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16
36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16
37 H 0.08 1.99 8.08 -2.39 -0.02 1.98 16
38 H 0.36 16.00 5.79 -92.71 -0.54 15.47 16
39 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16
40 H 0.06 1.98 7.92 -2.39 -0.02 1.96 16
41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
Total: -1.00 -79.47 344.10 -3.16 -82.63
By element:
Atomic # 1 Polarization: 30.68 SS G_CDS: -2.60 Total: 28.08 kcal
Atomic # 6 Polarization: 4.29 SS G_CDS: 5.46 Total: 9.75 kcal
Atomic # 7 Polarization: -127.84 SS G_CDS: -7.82 Total: -135.66 kcal
Atomic # 8 Polarization: -32.25 SS G_CDS: -0.12 Total: -32.36 kcal
Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal
Total: -79.47 -3.16 -82.63 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691090632.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.354 kcal
(2) G-P(sol) polarization free energy of solvation -79.466 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.113 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.164 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.630 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.277 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds