Wall clock time and date at job start Tue Mar 31 2020 02:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.09002 * 112.85201 * 24.07928 * 10 9 7 12 12 C 1.53784 * 113.61491 * 155.27848 * 10 9 7 13 13 C 1.53777 * 87.08172 * 89.11442 * 12 10 9 14 14 H 1.08994 * 113.61502 * 270.88324 * 13 12 10 15 15 C 1.53000 * 113.61078 * 139.98329 * 13 12 10 16 16 N 1.46508 * 109.47199 * 174.99906 * 15 13 12 17 17 C 1.34772 * 120.00201 * 179.97438 * 16 15 13 18 18 O 1.21280 * 119.99997 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.00112 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.47435 * 180.02562 * 19 17 16 21 21 N 1.46498 * 109.47157 * 179.97438 * 20 19 17 22 22 C 1.34772 * 119.99834 * 179.97438 * 21 20 19 23 23 N 1.34784 * 120.00218 * 179.97438 * 22 21 20 24 24 O 1.21585 * 120.00108 * 0.02562 * 22 21 20 25 25 C 1.53777 * 87.08146 * 25.43581 * 13 12 10 26 26 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 28 28 H 1.08999 * 113.61037 * 203.66621 * 12 10 9 29 29 H 1.09001 * 113.61313 * 334.56329 * 12 10 9 30 30 H 1.09001 * 109.47345 * 294.99469 * 15 13 12 31 31 H 1.08997 * 109.47735 * 54.99901 * 15 13 12 32 32 H 0.96998 * 119.99723 * 0.02562 * 16 15 13 33 33 H 1.09001 * 109.47162 * 300.00378 * 19 17 16 34 34 H 1.09004 * 109.47206 * 59.99779 * 19 17 16 35 35 H 1.08997 * 109.46722 * 300.00146 * 20 19 17 36 36 H 1.09004 * 109.46647 * 60.00237 * 20 19 17 37 37 H 0.96998 * 120.00090 * 0.02562 * 21 20 19 38 38 H 0.96998 * 119.99706 * 0.02562 * 23 22 21 39 39 H 0.96995 * 120.00281 * 179.97438 * 23 22 21 40 40 H 1.08999 * 113.61239 * 220.01646 * 25 13 12 41 41 H 1.08999 * 113.61926 * 89.11880 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0654 -3.5658 0.4010 12 6 1.2598 -4.8316 0.5846 13 6 0.7206 -5.0752 -0.8347 14 1 -0.1900 -4.5191 -1.0573 15 6 0.6198 -6.5560 -1.2061 16 7 -0.0117 -6.6877 -2.5215 17 6 -0.2054 -7.9093 -3.0568 18 8 0.1426 -8.8997 -2.4494 19 6 -0.8544 -8.0448 -4.4101 20 6 -0.9553 -9.5256 -4.7815 21 7 -1.5868 -9.6572 -6.0968 22 6 -1.7806 -10.8788 -6.6321 23 7 -2.3621 -11.0000 -7.8420 24 8 -1.4318 -11.8716 -6.0231 25 6 1.9994 -4.3960 -1.3523 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0002 28 1 1.8865 -5.6411 0.9586 29 1 0.4932 -4.5250 1.2963 30 1 1.6185 -6.9916 -1.2374 31 1 0.0191 -7.0776 -0.4610 32 1 -0.2897 -5.8957 -3.0075 33 1 -1.8532 -7.6094 -4.3793 34 1 -0.2536 -7.5230 -5.1551 35 1 0.0433 -9.9613 -4.8122 36 1 -1.5565 -10.0468 -4.0365 37 1 -1.8648 -8.8651 -6.5828 38 1 -2.6407 -10.2079 -8.3276 39 1 -2.5012 -11.8791 -8.2274 40 1 1.8299 -3.7378 -2.2045 41 1 2.8283 -5.0865 -1.5080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691537633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:48 Heat of formation + Delta-G solvation = -47.706861 kcal Electronic energy + Delta-G solvation = -21356.057239 eV Core-core repulsion = 17885.469483 eV Total energy + Delta-G solvation = -3470.587756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26872 -39.73530 -38.55290 -35.47458 -34.68386 -33.98596 -33.24491 -31.09625 -30.08018 -27.41622 -25.09763 -24.33540 -23.49009 -21.70047 -21.49624 -20.53986 -18.75137 -18.34272 -17.66099 -17.40074 -16.89249 -16.34759 -15.96123 -15.38194 -15.01025 -14.91222 -14.44258 -14.39952 -13.97248 -13.90829 -13.41550 -13.11652 -12.91714 -12.31940 -12.20901 -11.95788 -11.82982 -11.41415 -11.07884 -10.86280 -10.66375 -10.52956 -10.25111 -10.18493 -10.06677 -9.83349 -9.72713 -9.50228 -9.36660 -9.04437 -8.91683 -7.04313 -5.84740 -3.13822 2.44413 2.52345 2.90307 3.22260 3.39457 3.44171 3.44919 4.11491 4.39810 4.52204 4.69419 4.72039 5.01392 5.03791 5.11075 5.21495 5.41490 5.57531 5.59026 5.66621 5.68442 5.83617 5.92318 6.06702 6.08450 6.18182 6.32652 6.33914 6.36856 6.54158 6.55573 6.70258 6.86179 7.00414 7.42645 7.58603 7.64843 8.12390 8.28963 8.34579 9.45169 10.02555 10.36789 11.37596 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031653 B = 0.002266 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.383268 B =12352.015646 C =12943.729818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.148 4.148 13 C -0.119 4.119 14 H 0.093 0.907 15 C 0.130 3.870 16 N -0.723 5.723 17 C 0.514 3.486 18 O -0.541 6.541 19 C -0.155 4.155 20 C 0.152 3.848 21 N -0.747 5.747 22 C 0.704 3.296 23 N -0.869 5.869 24 O -0.591 6.591 25 C -0.168 4.168 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.403 0.597 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.396 0.604 38 H 0.396 0.604 39 H 0.415 0.585 40 H 0.066 0.934 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.916 -15.814 -14.124 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.054 3.946 11 H 0.080 0.920 12 C -0.188 4.188 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.007 3.993 16 N -0.374 5.374 17 C 0.299 3.701 18 O -0.419 6.419 19 C -0.195 4.195 20 C 0.028 3.972 21 N -0.403 5.403 22 C 0.402 3.598 23 N -0.437 5.437 24 O -0.468 6.468 25 C -0.209 4.209 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.237 0.763 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.230 0.770 38 H 0.224 0.776 39 H 0.246 0.754 40 H 0.085 0.915 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.181 -17.088 -12.968 21.855 hybrid contribution -0.432 1.819 -1.015 2.127 sum -4.612 -15.269 -13.983 21.212 Atomic orbital electron populations 1.69652 1.05132 1.25914 1.57412 1.24767 0.95558 0.97808 1.02762 0.86236 0.78511 0.83329 0.77908 1.21227 1.21683 1.21179 1.19250 0.91106 0.83980 1.43072 0.91035 1.42162 1.05660 0.99427 1.87163 1.21062 0.95134 0.85602 0.92760 0.91958 1.23445 1.00511 0.99702 0.95119 1.22707 0.99546 0.92930 0.98629 0.88898 1.21502 0.97671 0.97069 0.83066 1.46068 1.62126 1.08052 1.21160 1.20262 0.79111 0.83461 0.87227 1.90747 1.51043 1.37186 1.62905 1.21810 1.03223 0.98350 0.96141 1.20892 0.99303 0.94354 0.82663 1.45074 1.66692 1.06836 1.21738 1.15943 0.78612 0.83824 0.81421 1.42991 1.67911 1.12681 1.20145 1.91006 1.57010 1.36592 1.62218 1.23890 0.95679 0.99615 1.01764 0.93386 0.78127 0.90433 0.91315 0.91508 0.91762 0.76274 0.88125 0.88109 0.90528 0.90534 0.77028 0.77608 0.75352 0.91539 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -16.92 5.31 -52.63 -0.28 -17.20 16 10 C 0.17 3.15 4.56 -67.12 -0.31 2.84 16 11 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 12 C -0.15 -2.29 7.39 -25.92 -0.19 -2.48 16 13 C -0.12 -1.68 3.63 -89.81 -0.33 -2.01 16 14 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 15 C 0.13 1.64 5.51 -4.04 -0.02 1.62 16 16 N -0.72 -7.76 5.56 -60.29 -0.33 -8.10 16 17 C 0.51 5.84 7.83 -10.99 -0.09 5.75 16 18 O -0.54 -8.49 15.98 5.56 0.09 -8.40 16 19 C -0.15 -1.08 5.81 -27.88 -0.16 -1.25 16 20 C 0.15 1.42 4.96 -4.04 -0.02 1.40 16 21 N -0.75 -5.28 5.56 -65.22 -0.36 -5.64 16 22 C 0.70 6.76 8.84 -86.92 -0.77 5.99 16 23 N -0.87 -4.20 8.88 27.63 0.25 -3.96 16 24 O -0.59 -8.88 17.18 5.29 0.09 -8.79 16 25 C -0.17 -2.67 7.43 -25.92 -0.19 -2.86 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.38 9.74 7.90 -40.82 -0.32 9.42 16 28 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.40 3.52 8.47 -40.82 -0.35 3.18 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.40 1.36 8.49 -40.82 -0.35 1.01 16 38 H 0.40 0.58 8.84 -40.82 -0.36 0.22 16 39 H 0.41 1.72 8.93 -40.82 -0.36 1.35 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -35.91 349.59 -8.23 -44.14 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.32 Total: 10.62 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -2.32 Total: 1.86 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.01 Total: -61.48 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.18 Total: -17.19 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.91 -8.23 -44.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691537633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.568 kcal (2) G-P(sol) polarization free energy of solvation -35.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds