Wall clock time and date at job start Tue Mar 31 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.09002 * 112.85201 * 24.07928 * 10 9 7 12 12 C 1.53784 * 113.61491 * 155.27848 * 10 9 7 13 13 C 1.53777 * 87.08172 * 89.11442 * 12 10 9 14 14 H 1.08994 * 113.61502 * 270.88324 * 13 12 10 15 15 C 1.53000 * 113.61078 * 139.98329 * 13 12 10 16 16 N 1.46508 * 109.47199 * 174.99906 * 15 13 12 17 17 C 1.34772 * 120.00201 * 179.97438 * 16 15 13 18 18 O 1.21280 * 119.99997 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.00112 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.47435 * 180.02562 * 19 17 16 21 21 N 1.46498 * 109.47157 * 179.97438 * 20 19 17 22 22 C 1.34772 * 119.99834 * 179.97438 * 21 20 19 23 23 N 1.34784 * 120.00218 * 179.97438 * 22 21 20 24 24 O 1.21585 * 120.00108 * 0.02562 * 22 21 20 25 25 C 1.53777 * 87.08146 * 25.43581 * 13 12 10 26 26 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 28 28 H 1.08999 * 113.61037 * 203.66621 * 12 10 9 29 29 H 1.09001 * 113.61313 * 334.56329 * 12 10 9 30 30 H 1.09001 * 109.47345 * 294.99469 * 15 13 12 31 31 H 1.08997 * 109.47735 * 54.99901 * 15 13 12 32 32 H 0.96998 * 119.99723 * 0.02562 * 16 15 13 33 33 H 1.09001 * 109.47162 * 300.00378 * 19 17 16 34 34 H 1.09004 * 109.47206 * 59.99779 * 19 17 16 35 35 H 1.08997 * 109.46722 * 300.00146 * 20 19 17 36 36 H 1.09004 * 109.46647 * 60.00237 * 20 19 17 37 37 H 0.96998 * 120.00090 * 0.02562 * 21 20 19 38 38 H 0.96998 * 119.99706 * 0.02562 * 23 22 21 39 39 H 0.96995 * 120.00281 * 179.97438 * 23 22 21 40 40 H 1.08999 * 113.61239 * 220.01646 * 25 13 12 41 41 H 1.08999 * 113.61926 * 89.11880 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0654 -3.5658 0.4010 12 6 1.2598 -4.8316 0.5846 13 6 0.7206 -5.0752 -0.8347 14 1 -0.1900 -4.5191 -1.0573 15 6 0.6198 -6.5560 -1.2061 16 7 -0.0117 -6.6877 -2.5215 17 6 -0.2054 -7.9093 -3.0568 18 8 0.1426 -8.8997 -2.4494 19 6 -0.8544 -8.0448 -4.4101 20 6 -0.9553 -9.5256 -4.7815 21 7 -1.5868 -9.6572 -6.0968 22 6 -1.7806 -10.8788 -6.6321 23 7 -2.3621 -11.0000 -7.8420 24 8 -1.4318 -11.8716 -6.0231 25 6 1.9994 -4.3960 -1.3523 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0002 28 1 1.8865 -5.6411 0.9586 29 1 0.4932 -4.5250 1.2963 30 1 1.6185 -6.9916 -1.2374 31 1 0.0191 -7.0776 -0.4610 32 1 -0.2897 -5.8957 -3.0075 33 1 -1.8532 -7.6094 -4.3793 34 1 -0.2536 -7.5230 -5.1551 35 1 0.0433 -9.9613 -4.8122 36 1 -1.5565 -10.0468 -4.0365 37 1 -1.8648 -8.8651 -6.5828 38 1 -2.6407 -10.2079 -8.3276 39 1 -2.5012 -11.8791 -8.2274 40 1 1.8299 -3.7378 -2.2045 41 1 2.8283 -5.0865 -1.5080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691537633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:47 Heat of formation + Delta-G solvation = -79.033191 kcal Electronic energy + Delta-G solvation = -21357.415651 eV Core-core repulsion = 17885.469483 eV Total energy + Delta-G solvation = -3471.946168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.10839 -40.65382 -39.83640 -36.29933 -35.91221 -34.93038 -34.63843 -32.22703 -31.49949 -28.63553 -26.41611 -25.82060 -24.76399 -22.95981 -22.21205 -21.44655 -19.84484 -19.37701 -19.20022 -18.30299 -17.77535 -17.13070 -17.00494 -16.63298 -16.25418 -15.81953 -15.80408 -15.40656 -15.14177 -15.08502 -14.62178 -14.46740 -14.23978 -13.68349 -13.27112 -12.92551 -12.90155 -12.88155 -12.61708 -12.44526 -12.19044 -12.05523 -11.58370 -11.52807 -11.45671 -11.04008 -10.87385 -10.74525 -10.71215 -10.06618 -9.97489 -8.98346 -7.94228 -5.22203 1.49293 1.51411 1.57516 1.65447 1.77413 2.16133 2.42203 2.56933 3.38247 3.58833 3.73676 3.75926 3.82102 3.85204 4.08832 4.11375 4.18885 4.34929 4.43501 4.55065 4.75260 4.81405 4.88603 4.94548 4.95182 5.02024 5.13859 5.31952 5.37769 5.41775 5.51086 5.58004 5.68550 5.90543 6.04510 6.29554 6.58403 7.12361 7.27229 7.34717 7.66053 8.12003 8.34503 9.28692 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031653 B = 0.002266 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.383268 B =12352.015646 C =12943.729818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.075 0.925 9 N -0.719 5.719 10 C 0.142 3.858 11 H 0.057 0.943 12 C -0.137 4.137 13 C -0.100 4.100 14 H 0.085 0.915 15 C 0.138 3.862 16 N -0.716 5.716 17 C 0.511 3.489 18 O -0.590 6.590 19 C -0.137 4.137 20 C 0.158 3.842 21 N -0.728 5.728 22 C 0.695 3.305 23 N -0.845 5.845 24 O -0.652 6.652 25 C -0.152 4.152 26 H 0.251 0.749 27 H 0.375 0.625 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.415 0.585 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.418 0.582 38 H 0.416 0.584 39 H 0.420 0.580 40 H 0.051 0.949 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 -15.561 -15.758 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.357 5.357 10 C 0.032 3.968 11 H 0.076 0.924 12 C -0.176 4.176 13 C -0.118 4.118 14 H 0.103 0.897 15 C 0.015 3.985 16 N -0.367 5.367 17 C 0.298 3.702 18 O -0.471 6.471 19 C -0.177 4.177 20 C 0.032 3.968 21 N -0.387 5.387 22 C 0.393 3.607 23 N -0.415 5.415 24 O -0.534 6.534 25 C -0.192 4.192 26 H 0.060 0.940 27 H 0.207 0.793 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.252 0.748 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.256 0.744 38 H 0.247 0.753 39 H 0.253 0.747 40 H 0.070 0.930 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.095 -16.800 -14.678 22.681 hybrid contribution -0.425 1.673 -0.516 1.801 sum -4.520 -15.127 -15.193 21.911 Atomic orbital electron populations 1.69799 1.06478 1.26116 1.59448 1.25533 0.96398 1.00983 1.03791 0.85231 0.77195 0.79311 0.78130 1.20378 1.22270 1.20633 1.19627 0.91499 0.85229 1.41136 0.90667 1.42278 1.05316 1.00476 1.87653 1.21397 0.94987 0.84954 0.95461 0.92443 1.23358 0.99990 0.98629 0.95672 1.22475 0.98380 0.93721 0.97261 0.89717 1.21272 0.97758 0.95431 0.84079 1.45981 1.61613 1.08620 1.20512 1.20965 0.78287 0.82627 0.88319 1.90736 1.53141 1.38728 1.64488 1.21740 1.05102 0.96876 0.94010 1.20638 0.97419 0.95685 0.83065 1.44777 1.65863 1.07065 1.20957 1.16259 0.78609 0.83586 0.82245 1.42759 1.66169 1.14025 1.18505 1.90968 1.59633 1.38729 1.64117 1.23694 0.97299 0.99152 0.99076 0.94020 0.79292 0.87913 0.92452 0.91700 0.92164 0.74815 0.84915 0.84899 0.93257 0.93284 0.74442 0.75264 0.74726 0.93048 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.36 13.06 21.65 0.28 -57.07 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 3 Si 0.97 44.89 29.55 68.60 2.03 46.91 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.24 -13.08 9.97 84.03 0.84 -12.24 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.72 -34.56 5.31 -320.44 -1.70 -36.26 16 10 C 0.14 5.24 4.56 45.52 0.21 5.45 16 11 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 12 C -0.14 -4.05 7.39 31.12 0.23 -3.82 16 13 C -0.10 -2.64 3.63 -10.27 -0.04 -2.68 16 14 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 15 C 0.14 3.23 5.51 86.38 0.48 3.71 16 16 N -0.72 -13.76 5.56 -463.06 -2.57 -16.33 16 17 C 0.51 10.74 7.83 87.66 0.69 11.43 16 18 O -0.59 -18.40 15.98 -3.03 -0.05 -18.45 16 19 C -0.14 -1.54 5.81 29.85 0.17 -1.36 16 20 C 0.16 2.83 4.96 86.38 0.43 3.26 16 21 N -0.73 -8.97 5.56 -478.53 -2.66 -11.63 16 22 C 0.70 12.72 8.84 179.05 1.58 14.30 16 23 N -0.85 -6.54 8.88 -184.74 -1.64 -8.18 16 24 O -0.65 -20.10 17.18 -3.98 -0.07 -20.17 16 25 C -0.15 -4.54 7.43 31.12 0.23 -4.31 16 26 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.37 19.23 7.90 -92.71 -0.73 18.50 16 28 H 0.10 2.54 8.10 -2.39 -0.02 2.52 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.58 7.84 -2.39 -0.02 1.57 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.42 6.04 8.47 -92.71 -0.79 5.26 16 33 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.13 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.05 1.16 8.10 -2.38 -0.02 1.14 16 37 H 0.42 1.42 8.49 -92.71 -0.79 0.64 16 38 H 0.42 -0.02 8.84 -92.71 -0.82 -0.84 16 39 H 0.42 2.81 8.93 -92.71 -0.83 1.99 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 2.32 7.90 -2.39 -0.02 2.30 16 Total: -1.00 -80.98 349.59 -3.95 -84.94 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -2.86 Total: 26.20 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 5.28 Total: 10.04 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -8.29 Total: -129.48 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.12 Total: -38.62 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -80.98 -3.95 -84.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691537633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.906 kcal (2) G-P(sol) polarization free energy of solvation -80.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds