Wall clock time and date at job start Tue Mar 31 2020 03:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34773 * 120.00480 * 2 1 4 4 O 1.21593 * 119.99596 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00282 * 180.02562 * 3 2 1 6 6 C 1.46506 * 120.00027 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.46888 * 180.02562 * 6 5 3 8 8 O 1.21283 * 120.00005 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99772 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99873 * 359.97438 * 9 7 6 11 11 C 1.46498 * 119.99828 * 180.27730 * 9 7 6 12 12 H 1.08996 * 110.64588 * 358.02846 * 11 9 7 13 13 C 1.55162 * 110.71768 * 234.69532 * 11 9 7 14 14 C 1.54912 * 101.58282 * 277.13961 * 13 11 9 15 15 N 1.47419 * 104.82974 * 322.99023 * 14 13 11 16 16 C 1.36945 * 125.64628 * 204.16458 * 15 14 13 17 17 H 1.07996 * 119.99973 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99856 * 359.95852 * 16 15 14 19 19 N 1.31620 * 120.00273 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47194 * 90.00015 * 20 18 16 22 22 H 1.48505 * 109.46797 * 210.00231 * 20 18 16 23 23 H 1.48498 * 109.47008 * 329.99618 * 20 18 16 24 24 C 1.47021 * 108.70774 * 24.12836 * 15 14 13 25 25 H 1.08995 * 109.47400 * 59.99626 * 1 2 3 26 26 H 1.09004 * 109.47739 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47097 * 300.00188 * 1 2 3 28 28 H 0.97005 * 119.99968 * 180.02562 * 2 1 3 29 29 H 0.96996 * 120.00282 * 0.02562 * 5 3 2 30 30 H 1.08999 * 109.46861 * 59.99615 * 6 5 3 31 31 H 1.08997 * 109.46855 * 300.00178 * 6 5 3 32 32 H 1.08999 * 109.46892 * 90.00594 * 10 9 7 33 33 H 1.09000 * 109.46803 * 209.99767 * 10 9 7 34 34 H 1.09000 * 109.47214 * 330.00561 * 10 9 7 35 35 H 1.09002 * 111.00533 * 35.21550 * 13 11 9 36 36 H 1.08997 * 111.00290 * 159.06462 * 13 11 9 37 37 H 1.09003 * 110.36234 * 204.15197 * 14 13 11 38 38 H 1.09000 * 110.46042 * 81.87899 * 14 13 11 39 39 H 0.96994 * 120.00443 * 180.02562 * 19 18 16 40 40 H 1.08992 * 109.88434 * 239.52072 * 24 15 14 41 41 H 1.09003 * 109.88142 * 118.35169 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2201 -0.0005 5 7 3.4866 1.1671 -0.0005 6 6 4.2192 2.4358 -0.0011 7 6 5.7008 2.1603 -0.0022 8 8 6.1050 1.0168 -0.0021 9 7 6.5767 3.1847 -0.0024 10 6 6.0884 4.5660 -0.0020 11 6 8.0170 2.9169 -0.0096 12 1 8.2086 1.8444 0.0208 13 6 8.7151 3.6369 1.1743 14 6 8.9098 5.0625 0.6002 15 7 9.2293 4.8554 -0.8240 16 6 9.9194 5.7282 -1.6223 17 1 10.1033 5.4829 -2.6578 18 6 10.3823 6.9283 -1.1004 19 7 10.1584 7.2271 0.1617 20 14 11.3231 8.1192 -2.1895 21 1 10.3702 9.0552 -2.8383 22 1 12.2880 8.8887 -1.3634 23 1 12.0593 7.3604 -3.2323 24 6 8.6850 3.5562 -1.2452 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9500 -0.8401 -0.0004 29 1 3.9716 0.3271 -0.0013 30 1 3.9562 3.0076 0.8888 31 1 3.9555 3.0072 -0.8911 32 1 5.9677 4.9084 1.0257 33 1 6.8062 5.2052 -0.5160 34 1 5.1279 4.6120 -0.5154 35 1 8.0725 3.6546 2.0545 36 1 9.6748 3.1732 1.4024 37 1 9.7348 5.5653 1.1049 38 1 7.9929 5.6431 0.7028 39 1 10.4815 8.0659 0.5263 40 1 9.4905 2.9156 -1.6041 41 1 7.9455 3.7018 -2.0327 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753436202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:27 Heat of formation + Delta-G solvation = -19.344067 kcal Electronic energy + Delta-G solvation = -22881.445724 eV Core-core repulsion = 19412.087871 eV Total energy + Delta-G solvation = -3469.357853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.46019 -39.63247 -37.59150 -34.88177 -34.53701 -34.44229 -32.18040 -29.54059 -28.60492 -27.88181 -26.32239 -25.69480 -24.22274 -21.25757 -20.74399 -20.21055 -19.20321 -18.52476 -17.08904 -16.84957 -16.57707 -16.17239 -15.63150 -15.26436 -14.78144 -14.47020 -14.46301 -13.79049 -13.77910 -13.44100 -13.06991 -12.58877 -12.50122 -12.42942 -12.27358 -12.06286 -11.82221 -11.62355 -11.11557 -10.93318 -10.86913 -10.46972 -10.39412 -10.15563 -9.91832 -9.64292 -9.56582 -9.53971 -9.07149 -8.70684 -8.38141 -6.90402 -5.71151 -3.13424 2.40168 2.60110 3.03711 3.21030 3.36935 3.42598 3.44063 4.11454 4.44028 4.47954 4.91357 5.20946 5.26488 5.28868 5.36310 5.39616 5.41236 5.51920 5.52313 5.66120 5.78605 5.87159 6.12960 6.18545 6.20911 6.25964 6.31758 6.51393 6.52840 6.65396 6.67888 6.92925 7.40860 7.55026 7.57830 7.79396 7.80768 8.16911 8.29808 8.40538 9.16013 9.76391 10.40194 11.32337 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037110 B = 0.003191 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.330456 B = 8772.107246 C = 9038.158426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.751 5.751 3 C 0.705 3.295 4 O -0.592 6.592 5 N -0.734 5.734 6 C 0.122 3.878 7 C 0.507 3.493 8 O -0.552 6.552 9 N -0.586 5.586 10 C 0.063 3.937 11 C 0.125 3.875 12 H 0.101 0.899 13 C -0.154 4.154 14 C 0.143 3.857 15 N -0.603 5.603 16 C -0.224 4.224 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.127 3.873 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.399 0.601 29 H 0.407 0.593 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.023 0.977 39 H 0.252 0.748 40 H 0.034 0.966 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.156 -12.815 1.807 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.407 5.407 3 C 0.404 3.596 4 O -0.470 6.470 5 N -0.392 5.392 6 C -0.006 4.006 7 C 0.295 3.705 8 O -0.432 6.432 9 N -0.317 5.317 10 C -0.080 4.080 11 C 0.022 3.978 12 H 0.119 0.881 13 C -0.194 4.194 14 C 0.019 3.981 15 N -0.330 5.330 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.000 4.000 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.232 0.768 29 H 0.244 0.756 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -14.389 -12.195 1.813 18.948 hybrid contribution 0.870 -0.021 -0.566 1.039 sum -13.518 -12.216 1.247 18.263 Atomic orbital electron populations 1.21389 0.78047 1.01919 1.02325 1.44872 1.07758 1.07159 1.80895 1.15845 0.81429 0.84381 0.77906 1.90941 1.67944 1.30233 1.57901 1.44764 1.04587 1.09840 1.80022 1.20941 0.88547 0.86400 1.04738 1.20423 0.88243 0.85274 0.76605 1.90640 1.79783 1.21130 1.51606 1.47753 1.06504 1.06498 1.70942 1.22225 1.00797 0.82467 1.02490 1.22202 0.77861 1.00433 0.97352 0.88139 1.23351 0.99392 1.00419 0.96188 1.22139 1.01144 0.90217 0.84596 1.44546 1.64110 1.16455 1.07845 1.19065 1.26727 0.96701 0.92683 0.90501 1.24775 1.01211 0.98006 0.96503 1.69786 1.51015 1.24095 1.12105 0.86075 0.79342 0.80910 0.79171 1.21617 1.21664 1.20733 1.21638 0.95444 0.88882 0.94031 0.92348 0.90687 0.92359 0.76807 0.75564 0.88468 0.88447 0.92217 0.87546 0.91778 0.91982 0.90943 0.87630 0.95949 0.93682 0.94867 0.95493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.75 10.70 59.84 0.64 1.39 16 2 N -0.75 -6.45 5.72 -72.07 -0.41 -6.86 16 3 C 0.70 8.81 8.57 -86.92 -0.74 8.07 16 4 O -0.59 -9.64 16.34 5.28 0.09 -9.56 16 5 N -0.73 -8.61 5.53 -66.41 -0.37 -8.97 16 6 C 0.12 1.52 4.71 -5.19 -0.02 1.49 16 7 C 0.51 7.51 7.74 -10.99 -0.09 7.43 16 8 O -0.55 -9.33 15.04 5.55 0.08 -9.24 16 9 N -0.59 -9.19 2.82 -171.83 -0.49 -9.68 16 10 C 0.06 0.92 8.34 59.85 0.50 1.42 16 11 C 0.12 2.20 3.58 -66.09 -0.24 1.97 16 12 H 0.10 1.77 6.99 -51.93 -0.36 1.41 16 13 C -0.15 -2.82 6.53 -24.58 -0.16 -2.98 16 14 C 0.14 3.23 5.00 -2.53 -0.01 3.22 16 15 N -0.60 -14.53 2.97 -170.08 -0.50 -15.04 16 16 C -0.22 -5.97 10.27 -15.06 -0.15 -6.13 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 19 N -0.92 -25.74 10.09 55.49 0.56 -25.18 16 20 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.13 2.58 6.25 -3.06 -0.02 2.56 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.40 2.29 8.84 -40.82 -0.36 1.93 16 29 H 0.41 4.38 7.45 -40.82 -0.30 4.08 16 30 H 0.10 1.16 8.11 -51.93 -0.42 0.74 16 31 H 0.10 1.19 7.40 -51.93 -0.38 0.80 16 32 H 0.06 0.82 8.00 -51.93 -0.42 0.41 16 33 H 0.11 1.95 5.17 -51.93 -0.27 1.68 16 34 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.11 2.75 5.87 -51.93 -0.30 2.45 16 38 H 0.02 0.51 5.55 -51.93 -0.29 0.23 16 39 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 LS Contribution 329.43 15.07 4.96 4.96 Total: -1.00 -32.42 329.43 -7.44 -39.86 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.94 Total: 5.12 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: -0.39 Total: 18.09 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -1.21 Total: -65.72 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.17 Total: -18.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.42 -7.44 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753436202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.515 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds