Wall clock time and date at job start Tue Mar 31 2020 03:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34773 * 120.00480 * 2 1 4 4 O 1.21593 * 119.99596 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00282 * 180.02562 * 3 2 1 6 6 C 1.46506 * 120.00027 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.46888 * 180.02562 * 6 5 3 8 8 O 1.21283 * 120.00005 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99772 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99873 * 359.97438 * 9 7 6 11 11 C 1.46498 * 119.99828 * 180.27730 * 9 7 6 12 12 H 1.08996 * 110.64588 * 358.02846 * 11 9 7 13 13 C 1.55162 * 110.71768 * 234.69532 * 11 9 7 14 14 C 1.54912 * 101.58282 * 277.13961 * 13 11 9 15 15 N 1.47419 * 104.82974 * 322.99023 * 14 13 11 16 16 C 1.36945 * 125.64628 * 204.16458 * 15 14 13 17 17 H 1.07996 * 119.99973 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99856 * 359.95852 * 16 15 14 19 19 N 1.31620 * 120.00273 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47194 * 90.00015 * 20 18 16 22 22 H 1.48505 * 109.46797 * 210.00231 * 20 18 16 23 23 H 1.48498 * 109.47008 * 329.99618 * 20 18 16 24 24 C 1.47021 * 108.70774 * 24.12836 * 15 14 13 25 25 H 1.08995 * 109.47400 * 59.99626 * 1 2 3 26 26 H 1.09004 * 109.47739 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47097 * 300.00188 * 1 2 3 28 28 H 0.97005 * 119.99968 * 180.02562 * 2 1 3 29 29 H 0.96996 * 120.00282 * 0.02562 * 5 3 2 30 30 H 1.08999 * 109.46861 * 59.99615 * 6 5 3 31 31 H 1.08997 * 109.46855 * 300.00178 * 6 5 3 32 32 H 1.08999 * 109.46892 * 90.00594 * 10 9 7 33 33 H 1.09000 * 109.46803 * 209.99767 * 10 9 7 34 34 H 1.09000 * 109.47214 * 330.00561 * 10 9 7 35 35 H 1.09002 * 111.00533 * 35.21550 * 13 11 9 36 36 H 1.08997 * 111.00290 * 159.06462 * 13 11 9 37 37 H 1.09003 * 110.36234 * 204.15197 * 14 13 11 38 38 H 1.09000 * 110.46042 * 81.87899 * 14 13 11 39 39 H 0.96994 * 120.00443 * 180.02562 * 19 18 16 40 40 H 1.08992 * 109.88434 * 239.52072 * 24 15 14 41 41 H 1.09003 * 109.88142 * 118.35169 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2201 -0.0005 5 7 3.4866 1.1671 -0.0005 6 6 4.2192 2.4358 -0.0011 7 6 5.7008 2.1603 -0.0022 8 8 6.1050 1.0168 -0.0021 9 7 6.5767 3.1847 -0.0024 10 6 6.0884 4.5660 -0.0020 11 6 8.0170 2.9169 -0.0096 12 1 8.2086 1.8444 0.0208 13 6 8.7151 3.6369 1.1743 14 6 8.9098 5.0625 0.6002 15 7 9.2293 4.8554 -0.8240 16 6 9.9194 5.7282 -1.6223 17 1 10.1033 5.4829 -2.6578 18 6 10.3823 6.9283 -1.1004 19 7 10.1584 7.2271 0.1617 20 14 11.3231 8.1192 -2.1895 21 1 10.3702 9.0552 -2.8383 22 1 12.2880 8.8887 -1.3634 23 1 12.0593 7.3604 -3.2323 24 6 8.6850 3.5562 -1.2452 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9500 -0.8401 -0.0004 29 1 3.9716 0.3271 -0.0013 30 1 3.9562 3.0076 0.8888 31 1 3.9555 3.0072 -0.8911 32 1 5.9677 4.9084 1.0257 33 1 6.8062 5.2052 -0.5160 34 1 5.1279 4.6120 -0.5154 35 1 8.0725 3.6546 2.0545 36 1 9.6748 3.1732 1.4024 37 1 9.7348 5.5653 1.1049 38 1 7.9929 5.6431 0.7028 39 1 10.4815 8.0659 0.5263 40 1 9.4905 2.9156 -1.6041 41 1 7.9455 3.7018 -2.0327 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753436202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:27 Heat of formation + Delta-G solvation = -43.879150 kcal Electronic energy + Delta-G solvation = -22882.509645 eV Core-core repulsion = 19412.087871 eV Total energy + Delta-G solvation = -3470.421774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60314 -40.74433 -39.08576 -36.04973 -35.70316 -35.46941 -33.98223 -31.23329 -29.95211 -29.11721 -27.61449 -26.77666 -25.90298 -22.39627 -22.02326 -21.86027 -20.29096 -19.68353 -18.93614 -18.11476 -17.61802 -17.22008 -16.91106 -16.65452 -16.30049 -15.70472 -15.62847 -15.25231 -14.87067 -14.71447 -14.18520 -13.94685 -13.83489 -13.60525 -13.47023 -13.30294 -13.24875 -13.00003 -12.92913 -12.77853 -12.39745 -12.03845 -11.96521 -11.79245 -11.52340 -11.39923 -10.93803 -10.66920 -10.48634 -9.86570 -9.71264 -8.85560 -7.74988 -5.18675 1.41317 1.46223 1.49665 1.49846 1.58438 2.08228 2.09132 2.51163 3.32044 3.34565 3.35691 3.72292 3.88121 4.01775 4.18888 4.30487 4.31118 4.37996 4.49640 4.64391 4.67591 4.69819 4.70047 4.90145 4.93987 4.98737 5.05087 5.11952 5.25101 5.45946 5.48876 5.53401 5.68555 5.85371 5.93039 6.32202 6.34513 6.93320 7.03050 7.13969 7.51080 7.79840 8.42914 9.25933 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037110 B = 0.003191 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.330456 B = 8772.107246 C = 9038.158426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.738 5.738 3 C 0.700 3.300 4 O -0.633 6.633 5 N -0.729 5.729 6 C 0.128 3.872 7 C 0.514 3.486 8 O -0.571 6.571 9 N -0.588 5.588 10 C 0.068 3.932 11 C 0.139 3.861 12 H 0.108 0.892 13 C -0.139 4.139 14 C 0.149 3.851 15 N -0.619 5.619 16 C -0.236 4.236 17 H 0.077 0.923 18 C -0.060 4.060 19 N -0.944 5.944 20 Si 0.975 3.025 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.274 1.274 24 C 0.127 3.873 25 H 0.048 0.952 26 H 0.113 0.887 27 H 0.048 0.952 28 H 0.414 0.586 29 H 0.413 0.587 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.017 0.983 39 H 0.247 0.753 40 H 0.033 0.967 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.309 -14.266 1.672 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.394 5.394 3 C 0.399 3.601 4 O -0.515 6.515 5 N -0.388 5.388 6 C 0.000 4.000 7 C 0.303 3.697 8 O -0.451 6.451 9 N -0.320 5.320 10 C -0.074 4.074 11 C 0.034 3.966 12 H 0.126 0.874 13 C -0.178 4.178 14 C 0.025 3.975 15 N -0.346 5.346 16 C -0.365 4.365 17 H 0.094 0.906 18 C -0.253 4.253 19 N -0.593 5.593 20 Si 0.804 3.196 21 H -0.214 1.214 22 H -0.221 1.221 23 H -0.199 1.199 24 C 0.001 3.999 25 H 0.066 0.934 26 H 0.132 0.868 27 H 0.067 0.933 28 H 0.250 0.750 29 H 0.251 0.749 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.035 0.965 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -15.558 -13.717 1.670 20.808 hybrid contribution 1.186 0.360 -0.547 1.354 sum -14.372 -13.357 1.123 19.653 Atomic orbital electron populations 1.21567 0.76918 1.04192 1.01375 1.44849 1.08461 1.06706 1.79345 1.16056 0.81446 0.84824 0.77748 1.90913 1.68690 1.31981 1.59909 1.44690 1.04461 1.09810 1.79850 1.20882 0.86659 0.86992 1.05463 1.20704 0.88920 0.84562 0.75548 1.90635 1.80285 1.21847 1.52325 1.47735 1.05772 1.07166 1.71278 1.22164 1.00893 0.81268 1.03071 1.21934 0.78996 1.00239 0.95387 0.87409 1.23191 1.00158 0.97536 0.96941 1.21925 0.99298 0.92414 0.83910 1.44739 1.64054 1.17357 1.08428 1.19362 1.26658 0.97374 0.93116 0.90563 1.25508 1.02489 0.99597 0.97747 1.70022 1.51918 1.24077 1.13320 0.85126 0.77966 0.78822 0.77666 1.21443 1.22123 1.19879 1.21715 0.95415 0.87471 0.95310 0.93355 0.86820 0.93288 0.74972 0.74875 0.87536 0.87854 0.91146 0.91138 0.89014 0.89984 0.90719 0.91325 0.96493 0.94331 0.94915 0.95675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.22 10.70 127.77 1.37 2.59 16 2 N -0.74 -11.01 5.72 -500.20 -2.86 -13.87 16 3 C 0.70 16.29 8.57 179.06 1.53 17.82 16 4 O -0.63 -19.94 16.34 -4.01 -0.07 -20.01 16 5 N -0.73 -15.60 5.53 -482.29 -2.67 -18.27 16 6 C 0.13 2.91 4.71 85.63 0.40 3.32 16 7 C 0.51 14.10 7.74 87.66 0.68 14.78 16 8 O -0.57 -18.00 15.04 -3.04 -0.05 -18.05 16 9 N -0.59 -17.43 2.82 -815.94 -2.30 -19.73 16 10 C 0.07 1.92 8.34 127.77 1.07 2.99 16 11 C 0.14 4.70 3.58 46.18 0.17 4.87 16 12 H 0.11 3.58 6.99 -2.39 -0.02 3.56 16 13 C -0.14 -4.95 6.53 31.99 0.21 -4.74 16 14 C 0.15 6.78 5.00 86.86 0.43 7.21 16 15 N -0.62 -30.13 2.97 -692.00 -2.05 -32.19 16 16 C -0.24 -12.76 10.27 84.03 0.86 -11.89 16 17 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 18 C -0.06 -3.31 5.49 84.86 0.47 -2.84 16 19 N -0.94 -53.85 10.09 21.65 0.22 -53.64 16 20 Si 0.98 44.61 29.55 68.60 2.03 46.64 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 C 0.13 5.12 6.25 86.73 0.54 5.66 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.11 0.45 8.14 -2.38 -0.02 0.44 16 27 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.41 3.61 8.84 -92.70 -0.82 2.79 16 29 H 0.41 7.94 7.45 -92.71 -0.69 7.25 16 30 H 0.11 2.29 8.11 -2.39 -0.02 2.27 16 31 H 0.10 2.29 7.40 -2.39 -0.02 2.27 16 32 H 0.07 1.82 8.00 -2.39 -0.02 1.80 16 33 H 0.07 2.56 5.17 -2.39 -0.01 2.55 16 34 H 0.09 2.04 6.44 -2.39 -0.02 2.03 16 35 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.07 3.67 5.87 -2.39 -0.01 3.66 16 38 H 0.02 0.79 5.55 -2.39 -0.01 0.78 16 39 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 40 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.03 1.03 8.04 -2.39 -0.02 1.01 16 Total: -1.00 -70.11 329.43 -0.47 -70.58 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.45 Total: 18.77 kcal Atomic # 6 Polarization: 32.03 SS G_CDS: 7.73 Total: 39.76 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -9.67 Total: -137.69 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.11 Total: -38.06 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -70.11 -0.47 -70.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753436202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.699 kcal (2) G-P(sol) polarization free energy of solvation -70.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds