Wall clock time and date at job start Tue Mar 31 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99983 * 2 1 4 4 O 1.21587 * 120.00132 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99961 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00003 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47200 * 179.97438 * 6 5 3 8 8 C 1.50698 * 109.47155 * 180.02562 * 7 6 5 9 9 O 1.21285 * 119.99902 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00207 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00008 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46948 * 174.94227 * 11 10 8 13 13 N 1.46505 * 115.55024 * 80.38544 * 12 11 10 14 14 C 1.36938 * 119.99737 * 65.27445 * 13 12 11 15 15 H 1.07997 * 120.00128 * 354.73939 * 14 13 12 16 16 C 1.38813 * 120.00038 * 174.45800 * 14 13 12 17 17 N 1.31610 * 120.00100 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 119.99785 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47097 * 89.99641 * 18 16 14 20 20 H 1.48496 * 109.46771 * 210.00033 * 18 16 14 21 21 H 1.48500 * 109.46838 * 329.99409 * 18 16 14 22 22 C 1.52995 * 117.49872 * 226.05876 * 12 11 10 23 23 C 1.53002 * 117.49982 * 294.71995 * 12 11 10 24 24 H 1.08989 * 109.47408 * 59.99574 * 1 2 3 25 25 H 1.09001 * 109.46843 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46734 * 299.99622 * 1 2 3 27 27 H 0.96998 * 120.00141 * 180.02562 * 2 1 3 28 28 H 0.96993 * 119.99923 * 359.97438 * 5 3 2 29 29 H 1.09001 * 109.47132 * 59.99535 * 6 5 3 30 30 H 1.08998 * 109.47287 * 300.00283 * 6 5 3 31 31 H 1.09002 * 109.47024 * 60.00165 * 7 6 5 32 32 H 1.09002 * 109.46875 * 300.00088 * 7 6 5 33 33 H 0.97001 * 119.99786 * 359.97438 * 10 8 7 34 34 H 1.08994 * 109.47255 * 54.94194 * 11 10 8 35 35 H 1.08999 * 109.46673 * 294.93754 * 11 10 8 36 36 H 0.96998 * 120.00497 * 245.27841 * 13 12 11 37 37 H 0.97005 * 119.99848 * 180.02562 * 17 16 14 38 38 H 1.09007 * 117.49708 * 215.00165 * 22 12 11 39 39 H 1.08996 * 117.50212 * 0.02562 * 22 12 11 40 40 H 1.08996 * 117.49829 * 359.97156 * 23 12 11 41 41 H 1.08994 * 117.49914 * 144.97651 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2192 2.4359 -0.0011 7 6 5.7235 2.1564 -0.0010 8 6 6.4769 3.4615 -0.0009 9 8 5.8705 4.5118 -0.0014 10 7 7.8247 3.4615 -0.0013 11 6 8.5571 4.7303 -0.0007 12 6 10.0566 4.4534 0.1258 13 7 10.7344 4.0656 -1.1138 14 6 10.8309 4.9568 -2.1490 15 1 10.3350 5.9141 -2.0854 16 6 11.5709 4.6321 -3.2776 17 7 11.6641 5.4889 -4.2723 18 14 12.4345 2.9791 -3.3845 19 1 11.5219 1.9828 -4.0006 20 1 13.6569 3.1123 -4.2172 21 1 12.8114 2.5285 -2.0207 22 6 10.8477 5.2933 1.1306 23 6 10.5509 3.8215 1.4286 24 1 -0.3633 0.5138 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 3.9717 0.3272 -0.0005 29 1 3.9562 3.0077 0.8888 30 1 3.9555 3.0073 -0.8910 31 1 5.9868 1.5844 -0.8907 32 1 5.9867 1.5852 0.8893 33 1 8.3097 2.6215 -0.0013 34 1 8.2279 5.3395 0.8410 35 1 8.3632 5.2621 -0.9322 36 1 11.1147 3.1776 -1.2013 37 1 12.1810 5.2618 -5.0612 38 1 11.8725 5.5574 0.8693 39 1 10.3000 6.0428 1.7018 40 1 9.8079 3.6034 2.1958 41 1 11.3800 3.1171 1.3634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754513849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:40 Heat of formation + Delta-G solvation = -26.935496 kcal Electronic energy + Delta-G solvation = -21814.952528 eV Core-core repulsion = 18345.265486 eV Total energy + Delta-G solvation = -3469.687042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20438 -39.51244 -37.71990 -35.51237 -34.70251 -33.86431 -33.05749 -31.15214 -30.40215 -27.40284 -26.26282 -23.69711 -23.30956 -21.98158 -21.21336 -20.18360 -19.28986 -18.70893 -17.71029 -17.07626 -16.35275 -16.22790 -15.78220 -15.41577 -15.06876 -14.58656 -14.40318 -14.29688 -13.94819 -13.89976 -13.14496 -13.09396 -12.76516 -12.54988 -12.40620 -12.20631 -12.00822 -11.56175 -11.27953 -11.10742 -11.03599 -10.59369 -10.47733 -10.18731 -9.82304 -9.67821 -9.56287 -9.42413 -9.08633 -8.94749 -8.70848 -7.41532 -5.85250 -3.24082 2.41068 2.80453 3.01192 3.28539 3.29913 3.37070 3.37827 4.03152 4.34402 4.49185 4.57042 4.86412 4.90165 4.92930 4.95481 5.12415 5.22562 5.29532 5.36746 5.47844 5.48383 5.68151 5.76321 5.86626 5.93707 6.12754 6.12928 6.23717 6.27691 6.35376 6.57388 6.61187 6.64661 6.73675 7.71844 7.75686 7.90783 8.33100 8.37173 8.42700 9.09562 9.80800 9.98556 11.32394 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021076 B = 0.002971 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.216446 B = 9421.732143 C =10009.510907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.754 5.754 3 C 0.701 3.299 4 O -0.585 6.585 5 N -0.747 5.747 6 C 0.153 3.847 7 C -0.153 4.153 8 C 0.513 3.487 9 O -0.542 6.542 10 N -0.713 5.713 11 C 0.147 3.853 12 C 0.132 3.868 13 N -0.714 5.714 14 C -0.245 4.245 15 H 0.093 0.907 16 C 0.009 3.991 17 N -0.928 5.928 18 Si 0.883 3.117 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.181 4.181 23 C -0.188 4.188 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.397 0.603 28 H 0.395 0.605 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.399 0.601 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.364 0.636 37 H 0.261 0.739 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.864 -15.721 12.247 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.400 3.600 4 O -0.463 6.463 5 N -0.403 5.403 6 C 0.029 3.971 7 C -0.194 4.194 8 C 0.298 3.702 9 O -0.420 6.420 10 N -0.363 5.363 11 C 0.022 3.978 12 C 0.039 3.961 13 N -0.355 5.355 14 C -0.374 4.374 15 H 0.111 0.889 16 C -0.188 4.188 17 N -0.575 5.575 18 Si 0.713 3.287 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.221 4.221 23 C -0.226 4.226 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.229 0.771 28 H 0.228 0.772 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.233 0.767 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.198 0.802 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.865 -13.727 12.042 23.546 hybrid contribution 1.559 -2.451 -0.303 2.921 sum -13.306 -16.178 11.739 24.011 Atomic orbital electron populations 1.21387 0.78154 1.01862 1.02380 1.44921 1.07791 1.07097 1.81137 1.15946 0.81749 0.84290 0.77994 1.90967 1.67795 1.30286 1.57209 1.45107 1.04749 1.09876 1.80546 1.20897 0.88065 0.83974 1.04179 1.21793 0.95301 0.97309 1.04970 1.20192 0.82603 0.90659 0.76760 1.90744 1.68095 1.33414 1.49734 1.45903 1.05690 1.10426 1.74238 1.21252 0.89304 0.84704 1.02557 1.20076 0.90044 1.02458 0.83539 1.42105 1.67236 1.14267 1.11902 1.18987 1.26560 0.98512 0.93365 0.88921 1.24687 0.99810 0.97577 0.96687 1.69693 1.45148 1.35065 1.07570 0.86588 0.79792 0.85042 0.77298 1.21083 1.21669 1.20303 1.23358 1.02496 0.92646 1.03602 1.23128 1.03340 0.97276 0.98886 0.92334 0.90733 0.92382 0.77056 0.77174 0.90603 0.90458 0.88195 0.88450 0.76710 0.91754 0.90067 0.80196 0.92905 0.88409 0.89502 0.89171 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.69 10.70 59.85 0.64 1.33 16 2 N -0.75 -5.54 5.72 -72.07 -0.41 -5.95 16 3 C 0.70 8.08 8.57 -86.92 -0.74 7.34 16 4 O -0.59 -9.75 16.34 5.29 0.09 -9.67 16 5 N -0.75 -6.70 5.56 -65.22 -0.36 -7.06 16 6 C 0.15 1.75 4.96 -4.04 -0.02 1.73 16 7 C -0.15 -1.42 5.81 -27.88 -0.16 -1.59 16 8 C 0.51 7.32 7.83 -10.99 -0.09 7.23 16 9 O -0.54 -10.13 15.98 5.55 0.09 -10.04 16 10 N -0.71 -10.05 5.51 -60.30 -0.33 -10.38 16 11 C 0.15 2.53 5.73 -4.04 -0.02 2.50 16 12 C 0.13 2.33 2.15 -131.82 -0.28 2.05 16 13 N -0.71 -15.56 5.29 -47.23 -0.25 -15.80 16 14 C -0.24 -6.57 10.05 -15.06 -0.15 -6.72 16 15 H 0.09 2.73 7.99 -52.49 -0.42 2.31 16 16 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 17 N -0.93 -28.48 13.97 55.49 0.78 -27.71 16 18 Si 0.88 21.03 27.68 -169.99 -4.71 16.33 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.15 6.60 56.52 0.37 -5.77 16 22 C -0.18 -2.93 10.11 -26.70 -0.27 -3.20 16 23 C -0.19 -2.65 10.14 -26.69 -0.27 -2.93 16 24 H 0.06 0.44 8.14 -51.94 -0.42 0.02 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.40 1.52 8.84 -40.82 -0.36 1.16 16 28 H 0.39 2.04 8.49 -40.82 -0.35 1.70 16 29 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 30 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.40 4.73 8.48 -40.82 -0.35 4.38 16 34 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 35 H 0.08 1.69 7.72 -51.93 -0.40 1.29 16 36 H 0.36 7.72 5.96 -40.82 -0.24 7.48 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 39 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -36.74 351.56 -7.62 -44.36 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.34 Total: 12.73 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.47 Total: 7.91 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.58 Total: -66.91 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.18 Total: -19.71 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.33 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.74 -7.62 -44.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754513849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.423 kcal (2) G-P(sol) polarization free energy of solvation -36.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds