Wall clock time and date at job start Tue Mar 31 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99983 * 2 1 4 4 O 1.21587 * 120.00132 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99961 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00003 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47200 * 179.97438 * 6 5 3 8 8 C 1.50698 * 109.47155 * 180.02562 * 7 6 5 9 9 O 1.21285 * 119.99902 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00207 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00008 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46948 * 174.94227 * 11 10 8 13 13 N 1.46505 * 115.55024 * 80.38544 * 12 11 10 14 14 C 1.36938 * 119.99737 * 65.27445 * 13 12 11 15 15 H 1.07997 * 120.00128 * 354.73939 * 14 13 12 16 16 C 1.38813 * 120.00038 * 174.45800 * 14 13 12 17 17 N 1.31610 * 120.00100 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 119.99785 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47097 * 89.99641 * 18 16 14 20 20 H 1.48496 * 109.46771 * 210.00033 * 18 16 14 21 21 H 1.48500 * 109.46838 * 329.99409 * 18 16 14 22 22 C 1.52995 * 117.49872 * 226.05876 * 12 11 10 23 23 C 1.53002 * 117.49982 * 294.71995 * 12 11 10 24 24 H 1.08989 * 109.47408 * 59.99574 * 1 2 3 25 25 H 1.09001 * 109.46843 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46734 * 299.99622 * 1 2 3 27 27 H 0.96998 * 120.00141 * 180.02562 * 2 1 3 28 28 H 0.96993 * 119.99923 * 359.97438 * 5 3 2 29 29 H 1.09001 * 109.47132 * 59.99535 * 6 5 3 30 30 H 1.08998 * 109.47287 * 300.00283 * 6 5 3 31 31 H 1.09002 * 109.47024 * 60.00165 * 7 6 5 32 32 H 1.09002 * 109.46875 * 300.00088 * 7 6 5 33 33 H 0.97001 * 119.99786 * 359.97438 * 10 8 7 34 34 H 1.08994 * 109.47255 * 54.94194 * 11 10 8 35 35 H 1.08999 * 109.46673 * 294.93754 * 11 10 8 36 36 H 0.96998 * 120.00497 * 245.27841 * 13 12 11 37 37 H 0.97005 * 119.99848 * 180.02562 * 17 16 14 38 38 H 1.09007 * 117.49708 * 215.00165 * 22 12 11 39 39 H 1.08996 * 117.50212 * 0.02562 * 22 12 11 40 40 H 1.08996 * 117.49829 * 359.97156 * 23 12 11 41 41 H 1.08994 * 117.49914 * 144.97651 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2192 2.4359 -0.0011 7 6 5.7235 2.1564 -0.0010 8 6 6.4769 3.4615 -0.0009 9 8 5.8705 4.5118 -0.0014 10 7 7.8247 3.4615 -0.0013 11 6 8.5571 4.7303 -0.0007 12 6 10.0566 4.4534 0.1258 13 7 10.7344 4.0656 -1.1138 14 6 10.8309 4.9568 -2.1490 15 1 10.3350 5.9141 -2.0854 16 6 11.5709 4.6321 -3.2776 17 7 11.6641 5.4889 -4.2723 18 14 12.4345 2.9791 -3.3845 19 1 11.5219 1.9828 -4.0006 20 1 13.6569 3.1123 -4.2172 21 1 12.8114 2.5285 -2.0207 22 6 10.8477 5.2933 1.1306 23 6 10.5509 3.8215 1.4286 24 1 -0.3633 0.5138 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 3.9717 0.3272 -0.0005 29 1 3.9562 3.0077 0.8888 30 1 3.9555 3.0073 -0.8910 31 1 5.9868 1.5844 -0.8907 32 1 5.9867 1.5852 0.8893 33 1 8.3097 2.6215 -0.0013 34 1 8.2279 5.3395 0.8410 35 1 8.3632 5.2621 -0.9322 36 1 11.1147 3.1776 -1.2013 37 1 12.1810 5.2618 -5.0612 38 1 11.8725 5.5574 0.8693 39 1 10.3000 6.0428 1.7018 40 1 9.8079 3.6034 2.1958 41 1 11.3800 3.1171 1.3634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754513849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:39 Heat of formation + Delta-G solvation = -59.611751 kcal Electronic energy + Delta-G solvation = -21816.369477 eV Core-core repulsion = 18345.265486 eV Total energy + Delta-G solvation = -3471.103991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15005 -40.66634 -39.10533 -36.37385 -35.56845 -35.33088 -34.80842 -32.35613 -32.04129 -28.43597 -27.16106 -25.65347 -24.30372 -23.21373 -22.07615 -21.33598 -20.66054 -19.74150 -19.61488 -18.12022 -17.45906 -17.14684 -16.93916 -16.55800 -16.29132 -16.12937 -15.51808 -15.36054 -15.08484 -14.95253 -14.72363 -14.26655 -14.13829 -13.92981 -13.53069 -13.07850 -13.02293 -12.91342 -12.83143 -12.43483 -12.34796 -12.25401 -11.80988 -11.65991 -11.53105 -11.11280 -10.98746 -10.61957 -10.45542 -10.01847 -9.79870 -9.32504 -8.01053 -5.37470 1.38161 1.43406 1.50877 1.61054 1.68665 2.11732 2.30613 2.49421 3.02052 3.28129 3.39009 3.44008 3.68633 3.81596 4.03880 4.10410 4.18133 4.27868 4.47267 4.53646 4.66830 4.77232 4.82310 4.85432 4.88739 4.91793 5.00080 5.05170 5.17774 5.37561 5.40623 5.48992 5.50359 5.80488 6.01082 6.22061 6.63906 7.08235 7.12171 7.31864 7.57807 7.81496 8.01886 9.20534 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021076 B = 0.002971 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.216446 B = 9421.732143 C =10009.510907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.735 5.735 3 C 0.691 3.309 4 O -0.645 6.645 5 N -0.727 5.727 6 C 0.159 3.841 7 C -0.133 4.133 8 C 0.507 3.493 9 O -0.595 6.595 10 N -0.702 5.702 11 C 0.159 3.841 12 C 0.101 3.899 13 N -0.714 5.714 14 C -0.223 4.223 15 H 0.048 0.952 16 C -0.068 4.068 17 N -0.987 5.987 18 Si 0.961 3.039 19 H -0.276 1.276 20 H -0.303 1.303 21 H -0.244 1.244 22 C -0.191 4.191 23 C -0.140 4.140 24 H 0.042 0.958 25 H 0.116 0.884 26 H 0.045 0.955 27 H 0.418 0.582 28 H 0.418 0.582 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.415 0.585 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.372 0.628 37 H 0.257 0.743 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.342 -20.276 14.561 28.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.392 5.392 3 C 0.390 3.610 4 O -0.527 6.527 5 N -0.385 5.385 6 C 0.034 3.966 7 C -0.172 4.172 8 C 0.294 3.706 9 O -0.476 6.476 10 N -0.353 5.353 11 C 0.032 3.968 12 C 0.009 3.991 13 N -0.356 5.356 14 C -0.354 4.354 15 H 0.066 0.934 16 C -0.259 4.259 17 N -0.637 5.637 18 Si 0.788 3.212 19 H -0.202 1.202 20 H -0.230 1.230 21 H -0.168 1.168 22 C -0.231 4.231 23 C -0.178 4.178 24 H 0.061 0.939 25 H 0.135 0.865 26 H 0.064 0.936 27 H 0.254 0.746 28 H 0.256 0.744 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.146 0.854 32 H 0.161 0.839 33 H 0.252 0.748 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.206 0.794 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.328 -18.412 14.431 27.433 hybrid contribution 1.291 -0.948 -0.961 1.868 sum -13.036 -19.361 13.470 26.948 Atomic orbital electron populations 1.21538 0.77473 1.04161 1.01037 1.44795 1.08225 1.06691 1.79463 1.16301 0.82362 0.84544 0.77788 1.90930 1.69114 1.32769 1.59871 1.44770 1.03987 1.10062 1.79652 1.20607 0.89943 0.84619 1.01450 1.21712 0.92375 0.94749 1.08393 1.21093 0.82491 0.91845 0.75137 1.90734 1.69046 1.35893 1.51932 1.45778 1.05753 1.09942 1.73844 1.20877 0.89722 0.85972 1.00185 1.20254 0.89579 1.05922 0.83365 1.41930 1.67705 1.13663 1.12260 1.18836 1.24383 0.97523 0.94656 0.93383 1.25590 1.01607 1.02284 0.96377 1.69912 1.47155 1.38044 1.08581 0.85332 0.77700 0.79601 0.78604 1.20166 1.23007 1.16792 1.23389 1.01358 0.95109 1.03290 1.23240 1.03362 0.95330 0.95842 0.93897 0.86529 0.93641 0.74583 0.74411 0.92954 0.94011 0.85423 0.83944 0.74835 0.91116 0.95173 0.79367 0.93441 0.90184 0.88005 0.85847 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.16 10.70 127.77 1.37 2.53 16 2 N -0.74 -9.25 5.72 -500.19 -2.86 -12.11 16 3 C 0.69 15.35 8.57 179.05 1.53 16.88 16 4 O -0.65 -22.20 16.34 -3.99 -0.07 -22.26 16 5 N -0.73 -11.58 5.56 -478.53 -2.66 -14.24 16 6 C 0.16 3.54 4.96 86.38 0.43 3.97 16 7 C -0.13 -2.04 5.81 29.85 0.17 -1.87 16 8 C 0.51 13.85 7.83 87.66 0.69 14.54 16 9 O -0.59 -22.86 15.98 -3.04 -0.05 -22.91 16 10 N -0.70 -18.42 5.51 -463.06 -2.55 -20.97 16 11 C 0.16 5.43 5.73 86.38 0.49 5.93 16 12 C 0.10 3.38 2.15 3.60 0.01 3.39 16 13 N -0.71 -30.26 5.29 -303.34 -1.60 -31.86 16 14 C -0.22 -12.28 10.05 84.03 0.84 -11.44 16 15 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 16 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 17 N -0.99 -63.07 13.97 21.65 0.30 -62.77 16 18 Si 0.96 43.20 27.68 68.60 1.90 45.10 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 21 H -0.24 -9.51 6.60 99.48 0.66 -8.85 16 22 C -0.19 -5.84 10.11 30.62 0.31 -5.53 16 23 C -0.14 -3.32 10.14 30.62 0.31 -3.01 16 24 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.42 1.74 8.84 -92.71 -0.82 0.92 16 28 H 0.42 2.67 8.49 -92.71 -0.79 1.88 16 29 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 30 H 0.04 1.23 8.10 -2.39 -0.02 1.21 16 31 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.42 8.22 8.48 -92.71 -0.79 7.43 16 34 H 0.07 2.31 7.94 -2.39 -0.02 2.29 16 35 H 0.03 1.33 7.72 -2.39 -0.02 1.31 16 36 H 0.37 14.59 5.96 -92.71 -0.55 14.04 16 37 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 38 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 39 H 0.10 2.78 8.08 -2.39 -0.02 2.76 16 40 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -88.52 351.56 -2.89 -91.41 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -1.92 Total: 28.66 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 6.62 Total: 21.96 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -9.38 Total: -141.95 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -0.11 Total: -45.17 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.90 Total: 45.10 kcal Total: -88.52 -2.89 -91.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754513849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.794 kcal (2) G-P(sol) polarization free energy of solvation -88.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds