Wall clock time and date at job start Tue Mar 31 2020 03:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47235 * 2 1 4 4 O 1.42900 * 109.46632 * 240.00546 * 2 1 3 5 5 C 1.52994 * 109.47181 * 120.00246 * 2 1 3 6 6 C 1.50701 * 109.46959 * 60.00064 * 5 2 1 7 7 O 1.21277 * 120.00002 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99947 * 180.02562 * 6 5 2 9 9 C 1.46501 * 120.00006 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.45930 * 299.96713 * 9 8 6 11 11 C 1.53036 * 109.45747 * 179.97438 * 9 8 6 12 12 C 1.53195 * 109.34212 * 301.33854 * 11 9 8 13 13 N 1.46938 * 108.77146 * 305.41944 * 12 11 9 14 14 C 1.36932 * 120.60087 * 233.57602 * 13 12 11 15 15 H 1.08001 * 120.00545 * 27.65420 * 14 13 12 16 16 C 1.38816 * 119.99937 * 207.65281 * 14 13 12 17 17 N 1.31623 * 119.99748 * 17.36640 * 16 14 13 18 18 Si 1.86801 * 120.00255 * 197.37215 * 16 14 13 19 19 H 1.48500 * 109.46854 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47358 * 119.99645 * 18 16 14 21 21 H 1.48496 * 109.47069 * 239.99846 * 18 16 14 22 22 C 1.46924 * 118.76383 * 53.55133 * 13 12 11 23 23 C 1.53038 * 109.45137 * 59.93770 * 9 8 6 24 24 H 1.09000 * 109.46595 * 299.99633 * 1 2 3 25 25 H 1.08998 * 109.47088 * 59.99600 * 1 2 3 26 26 H 1.09001 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46968 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47367 * 300.00478 * 3 2 1 29 29 H 1.09000 * 109.47134 * 60.00088 * 3 2 1 30 30 H 0.96701 * 114.00121 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.47619 * 300.00123 * 5 2 1 32 32 H 1.08996 * 109.47135 * 179.97438 * 5 2 1 33 33 H 0.97001 * 120.00054 * 359.97438 * 8 6 5 34 34 H 1.08993 * 109.47348 * 300.03389 * 10 9 8 35 35 H 1.09005 * 109.47095 * 60.03094 * 10 9 8 36 36 H 1.08997 * 109.47150 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.50381 * 61.30743 * 11 9 8 38 38 H 1.09003 * 109.49843 * 181.37250 * 11 9 8 39 39 H 1.09001 * 109.58753 * 65.16912 * 12 11 9 40 40 H 1.08997 * 109.58687 * 185.59953 * 12 11 9 41 41 H 0.96998 * 119.99441 * 180.02562 * 17 16 14 42 42 H 1.09002 * 109.58363 * 186.62924 * 22 13 12 43 43 H 1.08996 * 109.70636 * 66.27037 * 22 13 12 44 44 H 1.08994 * 109.49892 * 178.60170 * 23 9 8 45 45 H 1.09004 * 109.49302 * 298.66334 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7213 1.2492 6 6 1.5377 -2.1421 1.2491 7 8 0.8401 -2.5386 0.3397 8 7 1.8629 -2.9719 2.2601 9 6 1.3741 -4.3530 2.2603 10 6 -0.1559 -4.3521 2.2609 11 6 1.8845 -5.0742 3.5098 12 6 3.4161 -5.0436 3.5233 13 7 3.9113 -5.6031 2.2581 14 6 4.8189 -6.6284 2.2573 15 1 4.8522 -7.3210 3.0854 16 6 5.6963 -6.7779 1.1920 17 7 5.9023 -5.7759 0.3636 18 14 6.5845 -8.4008 0.9339 19 1 6.1828 -9.3590 1.9949 20 1 6.2258 -8.9554 -0.3961 21 1 8.0512 -8.1781 0.9982 22 6 3.4142 -5.0423 0.9944 23 6 1.8831 -5.0739 1.0100 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 2.9703 -0.7121 -1.2329 31 1 1.6768 -0.2076 2.1392 32 1 3.1300 -0.7217 1.2489 33 1 2.4206 -2.6547 2.9876 34 1 -0.5186 -3.8376 3.1507 35 1 -0.5193 -3.8386 1.3708 36 1 -0.5198 -5.3796 2.2615 37 1 1.5029 -4.5742 4.4000 38 1 1.5414 -6.1088 3.4984 39 1 3.7601 -4.0145 3.6266 40 1 3.7862 -5.6403 4.3570 41 1 6.5151 -5.8805 -0.3810 42 1 3.7835 -5.6383 0.1598 43 1 3.7575 -4.0132 0.8887 44 1 1.5405 -6.1085 1.0218 45 1 1.4999 -4.5739 0.1205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754625595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:50 Heat of formation + Delta-G solvation = -72.239692 kcal Electronic energy + Delta-G solvation = -24629.724998 eV Core-core repulsion = 21261.613762 eV Total energy + Delta-G solvation = -3368.111236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.19709 -38.30739 -36.65800 -34.31112 -32.61937 -31.90663 -30.86966 -29.85293 -27.92166 -27.38758 -27.26932 -24.06084 -22.24465 -21.60899 -20.55666 -19.90607 -18.54297 -17.31100 -16.67632 -16.05942 -15.41959 -14.87128 -14.77126 -14.39341 -14.23797 -13.84788 -13.53322 -13.34964 -13.19138 -13.04249 -12.53749 -12.29402 -12.19686 -12.15182 -11.83070 -11.71138 -11.57064 -11.36272 -11.32792 -11.03130 -10.90744 -10.71250 -10.66064 -10.32126 -10.20159 -9.97065 -9.91132 -9.58588 -9.49734 -8.84058 -8.43866 -8.42645 -6.64363 -5.76627 -3.18866 3.10905 3.38190 3.46243 3.48007 3.58474 4.36473 4.51158 4.71956 4.84554 4.99853 5.19906 5.35651 5.38522 5.40726 5.47300 5.52839 5.57941 5.59026 5.65484 5.80265 5.89985 5.99004 6.02867 6.06020 6.14088 6.16431 6.24055 6.41300 6.50396 6.56120 6.58911 6.69215 6.78515 6.90155 6.98199 7.20513 7.46426 7.74505 7.82545 7.88421 8.03753 8.47293 8.76190 9.23843 9.87480 10.43917 11.31263 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020776 B = 0.005072 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.383763 B = 5519.545550 C = 6261.579664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 C -0.179 4.179 4 O -0.542 6.542 5 C -0.173 4.173 6 C 0.516 3.484 7 O -0.518 6.518 8 N -0.715 5.715 9 C 0.185 3.815 10 C -0.159 4.159 11 C -0.137 4.137 12 C 0.146 3.854 13 N -0.591 5.591 14 C -0.253 4.253 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.900 3.100 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.180 3.820 23 C -0.150 4.150 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.371 0.629 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.394 0.606 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.013 0.987 40 H 0.054 0.946 41 H 0.252 0.748 42 H 0.083 0.917 43 H 0.015 0.985 44 H 0.056 0.944 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.137 11.990 4.189 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.106 3.894 3 C -0.237 4.237 4 O -0.347 6.347 5 C -0.214 4.214 6 C 0.302 3.698 7 O -0.394 6.394 8 N -0.367 5.367 9 C 0.100 3.900 10 C -0.217 4.217 11 C -0.177 4.177 12 C 0.020 3.980 13 N -0.314 5.314 14 C -0.383 4.383 15 H 0.082 0.918 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.730 3.270 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.218 1.218 22 C 0.054 3.946 23 C -0.190 4.190 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.217 0.783 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.228 0.772 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.033 0.967 44 H 0.075 0.925 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.167 11.620 3.287 15.787 hybrid contribution 1.570 -0.507 0.450 1.710 sum -8.597 11.113 3.738 14.539 Atomic orbital electron populations 1.21978 0.92622 1.05222 1.00938 1.20825 0.95369 0.89301 0.83955 1.22534 1.01466 0.97004 1.02649 1.86689 1.26023 1.79329 1.42646 1.22493 1.02973 0.94840 1.01054 1.20211 0.80638 0.87016 0.81909 1.90592 1.37356 1.76586 1.34888 1.46139 1.53399 1.12160 1.24969 1.20213 0.92393 0.80468 0.96953 1.22217 0.95641 1.01706 1.02167 1.22329 0.99614 1.00471 0.95281 1.20853 0.90514 0.96105 0.90567 1.44084 1.48291 1.39574 0.99455 1.19217 1.09904 1.02973 1.06187 0.91757 1.25020 0.97279 0.97384 0.99901 1.70052 1.37666 1.28990 1.17809 0.86262 0.79089 0.83828 0.77823 1.20286 1.21556 1.21798 1.20646 0.87320 0.96804 0.89791 1.22557 1.00704 0.98947 0.96824 0.92445 0.92644 0.88794 0.92315 0.91684 0.91804 0.78278 0.88850 0.88888 0.77198 0.93700 0.90776 0.92466 0.92799 0.90878 0.96939 0.92756 0.93756 0.89913 0.96666 0.92529 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.52 37.16 0.32 -1.56 16 2 C 0.15 1.77 0.98 -90.62 -0.09 1.68 16 3 C -0.18 -1.65 8.82 37.16 0.33 -1.32 16 4 O -0.54 -7.99 11.88 -53.49 -0.64 -8.63 16 5 C -0.17 -2.04 4.95 -27.89 -0.14 -2.17 16 6 C 0.52 8.02 6.81 -10.98 -0.07 7.95 16 7 O -0.52 -9.59 9.18 -12.69 -0.12 -9.71 16 8 N -0.72 -10.97 4.10 -47.57 -0.20 -11.16 16 9 C 0.19 3.14 0.66 -131.78 -0.09 3.05 16 10 C -0.16 -2.44 8.40 37.16 0.31 -2.13 16 11 C -0.14 -2.27 4.96 -26.61 -0.13 -2.40 16 12 C 0.15 2.90 6.24 -3.70 -0.02 2.88 16 13 N -0.59 -14.56 2.99 -172.34 -0.52 -15.08 16 14 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 15 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 16 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 17 N -0.90 -26.30 11.19 55.49 0.62 -25.68 16 18 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 C 0.18 4.38 5.05 -3.74 -0.02 4.36 16 23 C -0.15 -3.11 4.66 -26.64 -0.12 -3.23 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.44 5.51 -51.93 -0.29 1.15 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.37 4.44 9.05 45.56 0.41 4.85 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.39 5.40 7.27 -40.82 -0.30 5.10 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.25 6.17 -51.93 -0.32 0.93 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.01 0.25 6.94 -51.93 -0.36 -0.12 16 40 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.08 2.32 6.04 -51.93 -0.31 2.01 16 43 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.59 6.20 -51.93 -0.32 1.27 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -31.92 341.53 -7.61 -39.53 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.92 Total: 8.77 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 0.04 Total: 0.03 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.09 Total: -51.91 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.75 Total: -18.34 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.92 -7.61 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754625595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.714 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds