Wall clock time and date at job start Tue Mar 31 2020 03:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47235 * 2 1 4 4 O 1.42900 * 109.46632 * 240.00546 * 2 1 3 5 5 C 1.52994 * 109.47181 * 120.00246 * 2 1 3 6 6 C 1.50701 * 109.46959 * 60.00064 * 5 2 1 7 7 O 1.21277 * 120.00002 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99947 * 180.02562 * 6 5 2 9 9 C 1.46501 * 120.00006 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.45930 * 299.96713 * 9 8 6 11 11 C 1.53036 * 109.45747 * 179.97438 * 9 8 6 12 12 C 1.53195 * 109.34212 * 301.33854 * 11 9 8 13 13 N 1.46938 * 108.77146 * 305.41944 * 12 11 9 14 14 C 1.36932 * 120.60087 * 233.57602 * 13 12 11 15 15 H 1.08001 * 120.00545 * 27.65420 * 14 13 12 16 16 C 1.38816 * 119.99937 * 207.65281 * 14 13 12 17 17 N 1.31623 * 119.99748 * 17.36640 * 16 14 13 18 18 Si 1.86801 * 120.00255 * 197.37215 * 16 14 13 19 19 H 1.48500 * 109.46854 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47358 * 119.99645 * 18 16 14 21 21 H 1.48496 * 109.47069 * 239.99846 * 18 16 14 22 22 C 1.46924 * 118.76383 * 53.55133 * 13 12 11 23 23 C 1.53038 * 109.45137 * 59.93770 * 9 8 6 24 24 H 1.09000 * 109.46595 * 299.99633 * 1 2 3 25 25 H 1.08998 * 109.47088 * 59.99600 * 1 2 3 26 26 H 1.09001 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46968 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47367 * 300.00478 * 3 2 1 29 29 H 1.09000 * 109.47134 * 60.00088 * 3 2 1 30 30 H 0.96701 * 114.00121 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.47619 * 300.00123 * 5 2 1 32 32 H 1.08996 * 109.47135 * 179.97438 * 5 2 1 33 33 H 0.97001 * 120.00054 * 359.97438 * 8 6 5 34 34 H 1.08993 * 109.47348 * 300.03389 * 10 9 8 35 35 H 1.09005 * 109.47095 * 60.03094 * 10 9 8 36 36 H 1.08997 * 109.47150 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.50381 * 61.30743 * 11 9 8 38 38 H 1.09003 * 109.49843 * 181.37250 * 11 9 8 39 39 H 1.09001 * 109.58753 * 65.16912 * 12 11 9 40 40 H 1.08997 * 109.58687 * 185.59953 * 12 11 9 41 41 H 0.96998 * 119.99441 * 180.02562 * 17 16 14 42 42 H 1.09002 * 109.58363 * 186.62924 * 22 13 12 43 43 H 1.08996 * 109.70636 * 66.27037 * 22 13 12 44 44 H 1.08994 * 109.49892 * 178.60170 * 23 9 8 45 45 H 1.09004 * 109.49302 * 298.66334 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7213 1.2492 6 6 1.5377 -2.1421 1.2491 7 8 0.8401 -2.5386 0.3397 8 7 1.8629 -2.9719 2.2601 9 6 1.3741 -4.3530 2.2603 10 6 -0.1559 -4.3521 2.2609 11 6 1.8845 -5.0742 3.5098 12 6 3.4161 -5.0436 3.5233 13 7 3.9113 -5.6031 2.2581 14 6 4.8189 -6.6284 2.2573 15 1 4.8522 -7.3210 3.0854 16 6 5.6963 -6.7779 1.1920 17 7 5.9023 -5.7759 0.3636 18 14 6.5845 -8.4008 0.9339 19 1 6.1828 -9.3590 1.9949 20 1 6.2258 -8.9554 -0.3961 21 1 8.0512 -8.1781 0.9982 22 6 3.4142 -5.0423 0.9944 23 6 1.8831 -5.0739 1.0100 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 2.9703 -0.7121 -1.2329 31 1 1.6768 -0.2076 2.1392 32 1 3.1300 -0.7217 1.2489 33 1 2.4206 -2.6547 2.9876 34 1 -0.5186 -3.8376 3.1507 35 1 -0.5193 -3.8386 1.3708 36 1 -0.5198 -5.3796 2.2615 37 1 1.5029 -4.5742 4.4000 38 1 1.5414 -6.1088 3.4984 39 1 3.7601 -4.0145 3.6266 40 1 3.7862 -5.6403 4.3570 41 1 6.5151 -5.8805 -0.3810 42 1 3.7835 -5.6383 0.1598 43 1 3.7575 -4.0132 0.8887 44 1 1.5405 -6.1085 1.0218 45 1 1.4999 -4.5739 0.1205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754625595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:50 Heat of formation + Delta-G solvation = -94.404458 kcal Electronic energy + Delta-G solvation = -24630.686135 eV Core-core repulsion = 21261.613762 eV Total energy + Delta-G solvation = -3369.072373 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47251 -39.56072 -37.98271 -36.00874 -33.75783 -33.46474 -32.41301 -31.57502 -29.14506 -28.81698 -28.12213 -25.91359 -23.91441 -23.00990 -22.00983 -20.97591 -20.05158 -18.81044 -18.22422 -17.16453 -16.85067 -16.47789 -16.12443 -15.64730 -15.53868 -15.35277 -15.12568 -14.82417 -14.66606 -14.44373 -14.01297 -13.39079 -13.27975 -13.15736 -13.10796 -13.02472 -12.84953 -12.79652 -12.70035 -12.57395 -12.45812 -12.33426 -12.18127 -11.94090 -11.74251 -11.58223 -11.26171 -11.23720 -10.91753 -10.52913 -10.13077 -9.76419 -8.65421 -7.86513 -5.30912 1.44142 1.47067 1.56612 1.92600 2.41424 2.51344 3.28534 3.44625 3.69881 3.76491 3.86621 3.97440 4.12192 4.13469 4.18579 4.36693 4.51475 4.62149 4.66741 4.71201 4.73100 4.80636 4.85710 4.89963 4.95617 4.98095 5.07822 5.09287 5.13989 5.17237 5.26059 5.31873 5.37060 5.40804 5.53224 5.55076 5.64758 5.74467 5.89420 6.39405 6.84811 6.95657 7.15718 7.58204 7.88670 8.39573 9.19188 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020776 B = 0.005072 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.383763 B = 5519.545550 C = 6261.579664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.139 3.861 3 C -0.170 4.170 4 O -0.573 6.573 5 C -0.165 4.165 6 C 0.508 3.492 7 O -0.552 6.552 8 N -0.712 5.712 9 C 0.188 3.812 10 C -0.148 4.148 11 C -0.124 4.124 12 C 0.141 3.859 13 N -0.608 5.608 14 C -0.260 4.260 15 H 0.069 0.931 16 C -0.052 4.052 17 N -0.934 5.934 18 Si 0.962 3.038 19 H -0.264 1.264 20 H -0.295 1.295 21 H -0.291 1.291 22 C 0.197 3.803 23 C -0.138 4.138 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.378 0.622 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.404 0.596 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.057 0.943 41 H 0.247 0.753 42 H 0.037 0.963 43 H -0.004 1.004 44 H 0.047 0.953 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 13.042 6.622 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.098 3.902 3 C -0.227 4.227 4 O -0.379 6.379 5 C -0.205 4.205 6 C 0.296 3.704 7 O -0.430 6.430 8 N -0.365 5.365 9 C 0.102 3.898 10 C -0.207 4.207 11 C -0.163 4.163 12 C 0.016 3.984 13 N -0.331 5.331 14 C -0.390 4.390 15 H 0.086 0.914 16 C -0.247 4.247 17 N -0.580 5.580 18 Si 0.790 3.210 19 H -0.189 1.189 20 H -0.223 1.223 21 H -0.218 1.218 22 C 0.071 3.929 23 C -0.178 4.178 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.225 0.775 31 H 0.146 0.854 32 H 0.119 0.881 33 H 0.240 0.760 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.014 0.986 44 H 0.065 0.935 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.878 12.686 5.771 17.680 hybrid contribution 1.765 -0.821 -0.301 1.970 sum -9.113 11.865 5.470 15.930 Atomic orbital electron populations 1.21962 0.93150 1.03428 1.02103 1.21056 0.95101 0.90835 0.83193 1.22436 1.01961 0.94777 1.03569 1.86659 1.26850 1.80160 1.44275 1.22510 1.03313 0.92325 1.02384 1.20926 0.79938 0.88429 0.81154 1.90599 1.38837 1.77506 1.36042 1.46093 1.53508 1.11377 1.25486 1.20084 0.93606 0.81104 0.94969 1.22087 0.93884 1.02193 1.02492 1.22198 0.96790 1.00752 0.96564 1.21074 0.92706 0.96388 0.88267 1.44289 1.48157 1.39615 1.01053 1.19569 1.09649 1.03758 1.06061 0.91366 1.25754 0.98658 1.00213 1.00072 1.70201 1.38684 1.30806 1.18349 0.85286 0.77741 0.80452 0.77477 1.18863 1.22254 1.21816 1.20266 0.89452 0.94515 0.88687 1.22348 0.97831 0.98900 0.98703 0.89793 0.92973 0.91950 0.91489 0.91999 0.89636 0.77480 0.85410 0.88107 0.75977 0.91126 0.92628 0.91937 0.88599 0.91354 0.95725 0.92400 0.94392 0.94473 0.98599 0.93454 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.52 71.98 0.61 -2.95 16 2 C 0.14 3.16 0.98 -10.79 -0.01 3.15 16 3 C -0.17 -2.70 8.82 71.98 0.63 -2.07 16 4 O -0.57 -17.10 11.88 -131.53 -1.56 -18.66 16 5 C -0.17 -3.52 4.95 29.85 0.15 -3.37 16 6 C 0.51 15.25 6.81 87.66 0.60 15.85 16 7 O -0.55 -20.67 9.18 14.43 0.13 -20.54 16 8 N -0.71 -20.50 4.10 -422.81 -1.73 -22.23 16 9 C 0.19 6.08 0.66 3.63 0.00 6.08 16 10 C -0.15 -4.23 8.40 71.98 0.60 -3.63 16 11 C -0.12 -3.72 4.96 30.67 0.15 -3.57 16 12 C 0.14 5.31 6.24 86.36 0.54 5.85 16 13 N -0.61 -29.96 2.99 -699.16 -2.09 -32.05 16 14 C -0.26 -14.26 9.58 84.04 0.81 -13.46 16 15 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 16 C -0.05 -2.92 4.91 84.86 0.42 -2.51 16 17 N -0.93 -56.28 11.19 21.65 0.24 -56.04 16 18 Si 0.96 45.51 29.59 68.60 2.03 47.54 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 C 0.20 9.87 5.05 86.35 0.44 10.31 16 23 C -0.14 -5.80 4.66 30.65 0.14 -5.65 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 1.92 5.51 -2.39 -0.01 1.91 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.38 9.30 9.05 -74.06 -0.67 8.63 16 31 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.40 9.89 7.27 -92.71 -0.67 9.21 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.83 6.17 -2.38 -0.01 1.81 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.02 0.89 6.94 -2.39 -0.02 0.87 16 40 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 41 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.04 2.19 6.04 -2.39 -0.01 2.17 16 43 H 0.00 -0.22 7.74 -2.39 -0.02 -0.23 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 2.55 6.20 -2.39 -0.01 2.54 16 Total: -1.00 -71.80 341.53 1.73 -70.07 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -0.36 Total: 27.87 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 5.08 Total: 4.04 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -3.59 Total: -110.32 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -1.43 Total: -39.20 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -71.80 1.73 -70.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754625595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.337 kcal (2) G-P(sol) polarization free energy of solvation -71.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds