Wall clock time and date at job start Tue Mar 31 2020 02:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.88332 * 2 1 4 4 C 1.54910 * 111.00473 * 123.92473 * 2 1 3 5 5 N 1.47420 * 104.83213 * 155.08701 * 4 2 1 6 6 C 1.34782 * 125.64645 * 155.91413 * 5 4 2 7 7 O 1.21277 * 120.00113 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99675 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47128 * 179.97438 * 8 6 5 10 10 N 1.46501 * 109.47317 * 180.02562 * 9 8 6 11 11 C 1.34777 * 119.99741 * 179.97438 * 10 9 8 12 12 N 1.34781 * 119.99580 * 179.97438 * 11 10 9 13 13 O 1.21587 * 120.00355 * 0.02562 * 11 10 9 14 14 C 1.47485 * 108.76078 * 335.88691 * 5 4 2 15 15 C 1.54328 * 107.03141 * 1.02937 * 14 5 4 16 16 H 1.09007 * 110.71775 * 140.68884 * 15 14 5 17 17 N 1.46496 * 110.71792 * 263.78257 * 15 14 5 18 18 C 1.36934 * 120.00548 * 271.15841 * 17 15 14 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 H 1.09004 * 109.47021 * 183.88124 * 1 2 3 27 27 H 1.08996 * 109.47357 * 303.87830 * 1 2 3 28 28 H 1.08998 * 109.47167 * 63.88663 * 1 2 3 29 29 H 1.09007 * 110.36611 * 273.92613 * 4 2 1 30 30 H 1.08994 * 110.36663 * 36.24306 * 4 2 1 31 31 H 1.08998 * 109.47234 * 299.99877 * 8 6 5 32 32 H 1.08998 * 109.47378 * 59.99879 * 8 6 5 33 33 H 1.09006 * 109.47134 * 299.99815 * 9 8 6 34 34 H 1.08998 * 109.46974 * 59.99773 * 9 8 6 35 35 H 0.96995 * 120.00006 * 359.97438 * 10 9 8 36 36 H 0.96996 * 119.99964 * 359.97438 * 12 11 10 37 37 H 0.97003 * 119.99834 * 180.02562 * 12 11 10 38 38 H 1.08994 * 110.03583 * 241.66692 * 14 5 4 39 39 H 1.09000 * 109.96439 * 120.34787 * 14 5 4 40 40 H 0.96999 * 119.99694 * 91.16365 * 17 15 14 41 41 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8071 1.2000 5 7 3.4272 -1.2433 0.7729 6 6 4.4477 -1.5622 1.5935 7 8 4.3008 -1.5011 2.7958 8 6 5.7711 -1.9948 1.0171 9 6 6.7490 -2.2956 2.1547 10 7 8.0358 -2.7156 1.5943 11 6 9.0566 -3.0334 2.4149 12 7 10.2403 -3.4202 1.8993 13 8 8.9094 -2.9721 3.6203 14 6 3.4692 -1.2739 -0.7011 15 6 2.0861 -0.8075 -1.2025 16 1 2.1892 -0.1698 -2.0806 17 7 1.2269 -1.9569 -1.4969 18 6 1.2431 -2.5223 -2.7440 19 1 1.8896 -2.1209 -3.5104 20 6 0.4286 -3.6110 -3.0231 21 7 0.4445 -4.1547 -4.2217 22 14 -0.6892 -4.3055 -1.6973 23 1 0.0355 -5.3573 -0.9398 24 1 -1.0931 -3.2176 -0.7706 25 1 -1.8984 -4.8935 -2.3274 26 1 -0.3633 -1.0253 0.0696 27 1 -0.3634 0.5728 0.8531 28 1 -0.3633 0.4523 -0.9227 29 1 2.1560 -0.1728 2.0837 30 1 1.4519 -1.6709 1.4018 31 1 5.6289 -2.8909 0.4132 32 1 6.1741 -1.1967 0.3936 33 1 6.8912 -1.3992 2.7582 34 1 6.3462 -3.0935 2.7785 35 1 8.1531 -2.7648 0.6327 36 1 10.3574 -3.4702 0.9378 37 1 10.9749 -3.6493 2.4899 38 1 3.6665 -2.2881 -1.0480 39 1 4.2428 -0.5981 -1.0655 40 1 0.6465 -2.3174 -0.8085 41 1 -0.1245 -4.9158 -4.4166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755120975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:01 Heat of formation + Delta-G solvation = -83.396826 kcal Electronic energy + Delta-G solvation = -22600.542602 eV Core-core repulsion = 19128.407213 eV Total energy + Delta-G solvation = -3472.135389 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -41.29500 -40.75106 -39.16920 -36.22317 -35.76061 -34.66296 -33.99440 -32.66935 -31.46478 -29.62802 -27.61692 -25.53348 -24.72144 -23.23411 -22.23240 -20.85563 -20.25073 -19.78360 -19.13322 -18.38729 -17.81115 -17.43866 -16.96292 -16.34201 -16.27268 -15.91034 -15.73252 -15.31720 -15.09028 -14.87210 -14.58992 -14.43312 -14.05100 -13.56047 -13.46335 -13.20473 -13.03254 -12.93217 -12.84846 -12.52118 -12.27314 -12.10786 -11.92588 -11.59603 -11.58316 -11.39969 -11.06846 -10.90426 -10.76293 -10.04098 -9.65678 -9.29111 -7.99457 -5.31290 1.37650 1.39397 1.45914 1.58305 1.70347 2.13891 2.22270 2.49073 3.31828 3.39571 3.59785 3.63676 3.73814 3.88913 3.95011 4.02978 4.07087 4.41048 4.46348 4.63733 4.65160 4.67231 4.82646 4.85760 4.89760 4.99373 5.00547 5.21003 5.25929 5.32984 5.38677 5.49228 5.83840 5.88181 6.02758 6.25231 6.53977 7.09002 7.10226 7.12353 7.63716 7.87774 8.04128 9.21508 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.003772 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.993394 B = 7420.412935 C = 8218.053518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 H 0.114 0.886 4 C 0.109 3.891 5 N -0.610 5.610 6 C 0.524 3.476 7 O -0.590 6.590 8 C -0.134 4.134 9 C 0.162 3.838 10 N -0.730 5.730 11 C 0.697 3.303 12 N -0.845 5.845 13 O -0.651 6.651 14 C 0.080 3.920 15 C 0.164 3.836 16 H 0.087 0.913 17 N -0.741 5.741 18 C -0.217 4.217 19 H 0.073 0.927 20 C -0.056 4.056 21 N -0.980 5.980 22 Si 0.934 3.066 23 H -0.289 1.289 24 H -0.252 1.252 25 H -0.300 1.300 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.417 0.583 36 H 0.416 0.584 37 H 0.421 0.579 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.363 0.637 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.254 7.890 6.650 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 H 0.132 0.868 4 C -0.014 4.014 5 N -0.343 5.343 6 C 0.314 3.686 7 O -0.472 6.472 8 C -0.174 4.174 9 C 0.036 3.964 10 N -0.388 5.388 11 C 0.395 3.605 12 N -0.414 5.414 13 O -0.534 6.534 14 C -0.045 4.045 15 C 0.055 3.945 16 H 0.105 0.895 17 N -0.384 5.384 18 C -0.348 4.348 19 H 0.091 0.909 20 C -0.248 4.248 21 N -0.631 5.631 22 Si 0.763 3.237 23 H -0.216 1.216 24 H -0.177 1.177 25 H -0.228 1.228 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.255 0.745 36 H 0.247 0.753 37 H 0.254 0.746 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.197 0.803 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.998 7.975 8.039 18.005 hybrid contribution -0.647 -1.255 -0.079 1.414 sum 13.351 6.720 7.960 16.934 Atomic orbital electron populations 1.21570 0.93677 1.01308 1.02498 1.22626 0.96672 0.99703 0.93051 0.86816 1.22280 0.82943 0.97860 0.98275 1.48670 1.11913 1.65580 1.08106 1.20581 0.85870 0.76487 0.85638 1.90706 1.84186 1.55845 1.16425 1.21697 0.90724 1.05831 0.99101 1.20602 0.81432 0.99610 0.94740 1.44801 1.11212 1.72631 1.10135 1.16223 0.81779 0.77822 0.84706 1.42749 1.12203 1.73826 1.12629 1.90959 1.83899 1.62776 1.15719 1.23176 1.01005 1.02534 0.77798 1.21473 0.88376 0.88035 0.96634 0.89525 1.42831 1.49118 1.35820 1.10608 1.19060 1.18268 1.08442 0.89023 0.90936 1.25278 1.01976 0.99660 0.97871 1.69838 1.44576 1.26764 1.21920 0.85738 0.79072 0.78948 0.79912 1.21581 1.17673 1.22756 0.94423 0.90850 0.91945 0.90436 0.93394 0.86448 0.84799 0.92583 0.93573 0.74531 0.75275 0.74638 0.91665 0.88239 0.80296 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.85 71.98 0.64 -2.71 16 2 C -0.10 -2.45 3.51 -9.40 -0.03 -2.49 16 3 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.11 2.99 6.35 86.86 0.55 3.54 16 5 N -0.61 -16.51 3.34 -810.63 -2.71 -19.22 16 6 C 0.52 14.71 7.85 87.65 0.69 15.40 16 7 O -0.59 -21.42 16.24 -3.02 -0.05 -21.47 16 8 C -0.13 -2.49 5.00 29.85 0.15 -2.34 16 9 C 0.16 3.71 4.96 86.38 0.43 4.14 16 10 N -0.73 -12.33 5.56 -478.52 -2.66 -14.99 16 11 C 0.70 15.16 8.84 179.05 1.58 16.74 16 12 N -0.84 -9.21 8.88 -184.74 -1.64 -10.85 16 13 O -0.65 -21.98 17.18 -3.99 -0.07 -22.05 16 14 C 0.08 2.03 6.26 86.64 0.54 2.57 16 15 C 0.16 4.88 3.37 46.18 0.16 5.03 16 16 H 0.09 2.51 8.11 -2.38 -0.02 2.49 16 17 N -0.74 -29.68 4.36 -317.33 -1.38 -31.07 16 18 C -0.22 -10.91 10.45 84.03 0.88 -10.03 16 19 H 0.07 3.91 8.06 -2.91 -0.02 3.88 16 20 C -0.06 -3.08 5.50 84.86 0.47 -2.61 16 21 N -0.98 -59.36 13.97 21.65 0.30 -59.06 16 22 Si 0.93 43.60 27.74 68.60 1.90 45.50 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.25 -10.59 6.52 99.48 0.65 -9.94 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 26 H 0.04 1.12 6.43 -2.38 -0.02 1.11 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 2.06 8.04 -2.38 -0.02 2.04 16 30 H 0.05 1.48 7.98 -2.39 -0.02 1.46 16 31 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.51 8.10 -2.38 -0.02 1.50 16 34 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 35 H 0.42 3.58 8.49 -92.71 -0.79 2.79 16 36 H 0.42 1.41 8.84 -92.71 -0.82 0.59 16 37 H 0.42 3.95 8.93 -92.71 -0.83 3.12 16 38 H 0.06 1.93 8.04 -2.39 -0.02 1.91 16 39 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.36 14.79 4.07 -92.71 -0.38 14.42 16 41 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -79.14 339.28 -2.05 -81.19 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -1.79 Total: 24.78 kcal Atomic # 6 Polarization: 21.20 SS G_CDS: 6.05 Total: 27.24 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -8.09 Total: -135.19 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -0.12 Total: -43.52 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.90 Total: 45.50 kcal Total: -79.14 -2.05 -81.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755120975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.206 kcal (2) G-P(sol) polarization free energy of solvation -79.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.35 seconds