Wall clock time and date at job start Tue Mar 31 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09005 * 109.47600 * 2 1 4 4 N 1.46510 * 109.47266 * 240.00402 * 2 1 3 5 5 C 1.34771 * 120.00055 * 84.99520 * 4 2 1 6 6 N 1.34776 * 120.00197 * 179.72799 * 5 4 2 7 7 O 1.21590 * 120.00134 * 0.02562 * 5 4 2 8 8 C 1.50698 * 109.47247 * 120.00440 * 2 1 3 9 9 O 1.21285 * 120.00048 * 119.99769 * 8 2 1 10 10 N 1.34775 * 120.00190 * 299.99726 * 8 2 1 11 11 C 1.46503 * 120.00132 * 179.97438 * 10 8 2 12 12 H 1.08993 * 109.46984 * 324.99752 * 11 10 8 13 13 C 1.53001 * 109.47097 * 85.00311 * 11 10 8 14 14 C 1.52997 * 109.46753 * 205.00267 * 11 10 8 15 15 C 1.53944 * 113.74127 * 162.20221 * 14 11 10 16 16 N 1.47814 * 86.03766 * 222.08156 * 15 14 11 17 17 C 1.36941 * 134.45913 * 204.64713 * 16 15 14 18 18 H 1.07992 * 120.00166 * 182.58033 * 17 16 15 19 19 C 1.38810 * 119.99853 * 2.57475 * 17 16 15 20 20 N 1.31629 * 119.99986 * 353.42206 * 19 17 16 21 21 Si 1.86795 * 120.00109 * 173.42341 * 19 17 16 22 22 H 1.48501 * 109.47297 * 94.97335 * 21 19 17 23 23 H 1.48503 * 109.47122 * 214.97480 * 21 19 17 24 24 H 1.48502 * 109.46956 * 334.97183 * 21 19 17 25 25 C 1.47587 * 91.04949 * 24.54511 * 16 15 14 26 26 H 1.09004 * 109.47237 * 59.99471 * 1 2 3 27 27 H 1.09005 * 109.47497 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47342 * 299.99751 * 1 2 3 29 29 H 0.96994 * 119.99610 * 265.00600 * 4 2 1 30 30 H 0.96999 * 120.00245 * 180.28292 * 6 5 4 31 31 H 0.97003 * 119.99431 * 0.27529 * 6 5 4 32 32 H 0.96995 * 119.99522 * 359.97438 * 10 8 2 33 33 H 1.08994 * 109.47389 * 64.48255 * 13 11 10 34 34 H 1.08998 * 109.47205 * 184.48657 * 13 11 10 35 35 H 1.09001 * 109.46984 * 304.48806 * 13 11 10 36 36 H 1.09005 * 112.94745 * 293.78604 * 14 11 10 37 37 H 1.09001 * 113.76950 * 336.34145 * 15 14 11 38 38 H 1.09004 * 113.77488 * 107.74223 * 15 14 11 39 39 H 0.96998 * 119.99556 * 179.97438 * 20 19 17 40 40 H 1.09002 * 113.76618 * 221.15416 * 25 16 15 41 41 H 1.09000 * 113.86751 * 89.76788 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1469 -0.0182 -2.3572 6 7 2.6014 -0.6521 -3.4563 7 8 1.8581 1.1617 -2.4117 8 6 2.0322 -0.7105 1.2304 9 8 2.7295 -1.6966 1.1190 10 7 1.7067 -0.2501 2.4545 11 6 2.1947 -0.9412 3.6506 12 1 2.2308 -2.0139 3.4611 13 6 3.5974 -0.4364 3.9948 14 6 1.2505 -0.6618 4.8217 15 6 1.4016 -1.6531 5.9898 16 7 -0.0751 -1.6456 6.0525 17 6 -0.9947 -1.9025 7.0342 18 1 -2.0502 -1.8658 6.8084 19 6 -0.5703 -2.2101 8.3195 20 7 0.7112 -2.3825 8.5658 21 14 -1.8176 -2.3796 9.6996 22 1 -2.1869 -3.8090 9.8603 23 1 -1.2269 -1.8757 10.9654 24 1 -3.0307 -1.5889 9.3702 25 6 -0.1605 -1.2479 4.6338 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.2489 -1.6317 -1.1528 30 1 2.6979 -0.1671 -4.2908 31 1 2.8321 -1.5933 -3.4128 32 1 1.1494 0.5387 2.5435 33 1 3.5483 0.6192 4.2618 34 1 3.9923 -1.0060 4.8360 35 1 4.2509 -0.5627 3.1316 36 1 1.2539 0.3837 5.1303 37 1 1.8240 -2.6147 5.6981 38 1 1.8821 -1.2254 6.8698 39 1 1.0078 -2.5971 9.4640 40 1 -0.9250 -0.4972 4.4333 41 1 -0.1982 -2.0890 3.9415 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755373727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:40 Heat of formation + Delta-G solvation = -48.862435 kcal Electronic energy + Delta-G solvation = -22644.851460 eV Core-core repulsion = 19174.213594 eV Total energy + Delta-G solvation = -3470.637866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.54676 -40.56062 -39.58390 -36.34047 -35.90068 -34.70657 -34.13512 -32.26941 -30.55196 -29.29301 -26.64556 -25.92650 -25.32857 -23.07372 -21.96609 -21.36763 -20.73786 -19.59074 -18.80367 -18.50534 -17.42340 -17.26730 -16.81469 -16.60946 -15.92017 -15.81720 -15.62549 -15.51110 -15.06786 -14.75964 -14.59250 -14.04521 -13.73614 -13.35645 -13.29884 -13.17745 -13.05448 -12.97351 -12.66575 -12.61490 -12.34184 -12.02966 -11.78279 -11.57300 -11.47872 -11.22142 -10.87858 -10.80438 -10.68399 -10.13396 -10.01263 -8.91092 -7.90510 -5.22297 1.46466 1.47640 1.54789 1.57162 1.66775 2.14740 2.34043 2.48446 3.31265 3.40330 3.51072 3.64973 3.84427 3.99138 4.08659 4.16057 4.30382 4.47485 4.60671 4.70464 4.80981 4.82775 4.85591 4.89340 4.98616 5.10361 5.23991 5.27073 5.32819 5.37278 5.51277 5.56877 5.68283 5.85079 5.95393 6.05079 6.53957 6.93275 7.02881 7.19484 7.62285 7.63225 8.58103 9.27039 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038649 B = 0.003063 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.303788 B = 9138.662315 C = 9530.415345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.149 3.851 3 H 0.116 0.884 4 N -0.725 5.725 5 C 0.705 3.295 6 N -0.847 5.847 7 O -0.638 6.638 8 C 0.515 3.485 9 O -0.573 6.573 10 N -0.700 5.700 11 C 0.164 3.836 12 H 0.065 0.935 13 C -0.153 4.153 14 C -0.109 4.109 15 C 0.170 3.830 16 N -0.645 5.645 17 C -0.235 4.235 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.977 3.023 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.266 1.266 25 C 0.128 3.872 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.411 0.589 30 H 0.422 0.578 31 H 0.413 0.587 32 H 0.416 0.584 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.106 0.894 37 H 0.012 0.988 38 H 0.043 0.957 39 H 0.248 0.752 40 H 0.064 0.936 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.485 5.321 -21.018 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.039 3.961 3 H 0.134 0.866 4 N -0.382 5.382 5 C 0.403 3.597 6 N -0.416 5.416 7 O -0.520 6.520 8 C 0.301 3.699 9 O -0.452 6.452 10 N -0.351 5.351 11 C 0.058 3.942 12 H 0.084 0.916 13 C -0.211 4.211 14 C -0.129 4.129 15 C 0.044 3.956 16 N -0.371 5.371 17 C -0.363 4.363 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.805 3.195 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.191 1.191 25 C 0.003 3.997 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.248 0.752 30 H 0.256 0.744 31 H 0.243 0.757 32 H 0.253 0.747 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.575 5.510 -20.663 21.682 hybrid contribution -0.378 -0.974 0.824 1.331 sum 3.196 4.536 -19.839 20.601 Atomic orbital electron populations 1.22132 0.91579 1.03325 1.04323 1.20583 0.96332 0.97346 0.81816 0.86642 1.44756 1.71091 1.14620 1.07757 1.16043 0.77920 0.84419 0.81334 1.42773 1.71738 1.15763 1.11349 1.90941 1.59508 1.16115 1.85420 1.20808 0.79605 0.84166 0.85361 1.90683 1.39630 1.27878 1.87034 1.45846 1.52870 1.32053 1.04377 1.20765 0.93550 0.96693 0.83161 0.91634 1.22049 0.95274 1.02331 1.01424 1.23443 0.94561 1.00539 0.94328 1.22141 0.84971 0.94052 0.94436 1.46485 1.03105 1.80659 1.06887 1.19437 0.88582 1.39761 0.88568 0.89898 1.25624 0.98088 1.02586 0.99795 1.70013 1.14670 1.55326 1.20242 0.85083 0.78311 0.77447 0.78615 1.21727 1.21965 1.19074 1.22692 0.95675 0.96167 0.85135 0.91276 0.91900 0.88956 0.75184 0.74419 0.75665 0.74700 0.90882 0.91965 0.92817 0.87637 0.97037 0.93823 0.94270 0.91816 0.94745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.38 71.98 0.68 -1.79 16 2 C 0.15 2.79 2.98 44.24 0.13 2.92 16 3 H 0.12 2.20 7.58 -2.38 -0.02 2.18 16 4 N -0.72 -13.24 4.96 -461.41 -2.29 -15.52 16 5 C 0.71 13.97 8.80 179.06 1.58 15.55 16 6 N -0.85 -9.17 8.88 -184.75 -1.64 -10.81 16 7 O -0.64 -17.83 16.84 -4.00 -0.07 -17.90 16 8 C 0.51 11.79 7.19 87.66 0.63 12.42 16 9 O -0.57 -17.01 15.50 -3.05 -0.05 -17.06 16 10 N -0.70 -14.85 4.84 -442.54 -2.14 -17.00 16 11 C 0.16 4.51 2.29 44.99 0.10 4.61 16 12 H 0.07 2.17 7.49 -2.39 -0.02 2.15 16 13 C -0.15 -3.88 9.43 71.98 0.68 -3.20 16 14 C -0.11 -3.57 3.35 -10.14 -0.03 -3.60 16 15 C 0.17 7.81 7.02 86.44 0.61 8.42 16 16 N -0.64 -32.42 3.70 -716.08 -2.65 -35.07 16 17 C -0.24 -13.11 10.69 84.03 0.90 -12.21 16 18 H 0.08 4.41 7.84 -2.91 -0.02 4.39 16 19 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 20 N -0.95 -57.46 11.43 21.65 0.25 -57.22 16 21 Si 0.98 45.53 29.56 68.60 2.03 47.56 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C 0.13 4.75 8.38 86.48 0.72 5.48 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.09 1.14 7.56 -2.39 -0.02 1.13 16 29 H 0.41 6.85 7.80 -92.71 -0.72 6.12 16 30 H 0.42 3.55 8.93 -92.71 -0.83 2.72 16 31 H 0.41 2.19 8.84 -92.71 -0.82 1.38 16 32 H 0.42 6.55 8.02 -92.71 -0.74 5.80 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.01 0.57 8.04 -2.39 -0.02 0.55 16 38 H 0.04 2.25 7.20 -2.38 -0.02 2.23 16 39 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.03 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -76.55 344.75 -2.14 -78.68 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -2.03 Total: 19.14 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 6.46 Total: 25.19 kcal Atomic # 7 Polarization: -127.14 SS G_CDS: -8.48 Total: -135.61 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.11 Total: -34.96 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -76.55 -2.14 -78.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755373727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.822 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds