Wall clock time and date at job start Tue Mar 31 2020 03:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46804 * 2 1 4 4 O 1.42895 * 109.47339 * 119.99723 * 2 1 3 5 5 C 1.53001 * 109.46873 * 240.00152 * 2 1 3 6 6 C 1.53000 * 109.46664 * 175.74336 * 5 2 1 7 7 H 1.08996 * 109.45824 * 55.97772 * 6 5 2 8 8 C 1.53036 * 109.46260 * 295.99769 * 6 5 2 9 9 C 1.53124 * 109.28044 * 180.80819 * 8 6 5 10 10 C 1.53116 * 109.15604 * 57.65610 * 9 8 6 11 11 C 1.53039 * 109.28199 * 302.34190 * 10 9 8 12 12 N 1.46850 * 109.45943 * 175.94975 * 6 5 2 13 13 C 1.46897 * 110.99875 * 305.85351 * 12 6 5 14 14 C 1.50702 * 109.47187 * 299.54189 * 13 12 6 15 15 O 1.21279 * 119.99656 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99850 * 180.27702 * 14 13 12 17 17 C 1.46500 * 119.99611 * 179.72276 * 16 14 13 18 18 C 1.50701 * 109.46885 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00262 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99968 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99957 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00000 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47166 * 89.99864 * 22 20 18 24 24 H 1.48506 * 109.46927 * 209.99952 * 22 20 18 25 25 H 1.48497 * 109.46831 * 329.99642 * 22 20 18 26 26 H 1.08999 * 109.46804 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46974 * 299.99997 * 1 2 3 28 28 H 1.09001 * 109.47672 * 60.00161 * 1 2 3 29 29 H 0.96703 * 113.99835 * 55.04809 * 4 2 1 30 30 H 1.08999 * 109.47452 * 55.74257 * 5 2 1 31 31 H 1.09001 * 109.46889 * 295.74364 * 5 2 1 32 32 H 1.09004 * 109.50227 * 60.86760 * 8 6 5 33 33 H 1.09009 * 109.50631 * 300.75006 * 8 6 5 34 34 H 1.08997 * 109.51828 * 297.75158 * 9 8 6 35 35 H 1.08998 * 109.57205 * 177.59158 * 9 8 6 36 36 H 1.09003 * 109.49675 * 182.40731 * 10 9 8 37 37 H 1.08993 * 109.53909 * 62.31057 * 10 9 8 38 38 H 1.08995 * 109.46289 * 299.16943 * 11 10 9 39 39 H 1.08998 * 109.46200 * 179.19268 * 11 10 9 40 40 H 1.09002 * 109.47131 * 179.53950 * 13 12 6 41 41 H 1.09000 * 109.47305 * 59.54603 * 13 12 6 42 42 H 0.96992 * 120.00191 * 359.72693 * 16 14 13 43 43 H 1.09001 * 109.47536 * 299.99836 * 17 16 14 44 44 H 1.08999 * 109.47347 * 60.00359 * 17 16 14 45 45 H 0.96999 * 119.99835 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5662 -0.6291 -1.3039 7 1 3.9875 -1.0327 -0.3832 8 6 3.9836 0.8353 -1.4568 9 6 5.5106 0.9207 -1.5313 10 6 6.0050 0.0676 -2.7027 11 6 5.5292 -1.3746 -2.5138 12 7 4.0624 -1.4029 -2.4492 13 6 3.5638 -2.7840 -2.4071 14 6 4.0394 -3.4514 -1.1424 15 8 4.7257 -2.8368 -0.3536 16 7 3.7062 -4.7328 -0.8904 17 6 4.1737 -5.3835 0.3361 18 6 3.6662 -6.8019 0.3770 19 1 3.0569 -7.1809 -0.4301 20 6 3.9798 -7.6158 1.4448 21 7 4.7223 -7.1544 2.4274 22 14 3.3514 -9.3742 1.4952 23 1 4.3377 -10.2713 0.8412 24 1 3.1625 -9.7921 2.9076 25 1 2.0544 -9.4570 0.7767 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6604 -1.5704 1.2720 30 1 1.6157 -0.2533 -2.1376 31 1 1.7402 -1.7685 -1.2119 32 1 3.6286 1.4063 -0.5988 33 1 3.5512 1.2435 -2.3704 34 1 5.9419 0.5486 -0.6020 35 1 5.8113 1.9573 -1.6831 36 1 7.0943 0.0901 -2.7349 37 1 5.6051 0.4634 -3.6362 38 1 5.9412 -1.7746 -1.5874 39 1 5.8674 -1.9816 -3.3535 40 1 3.9396 -3.3325 -3.2709 41 1 2.4740 -2.7776 -2.4269 42 1 3.1571 -5.2242 -1.5211 43 1 5.2635 -5.3865 0.3532 44 1 3.7982 -4.8386 1.2023 45 1 4.9426 -7.7269 3.1788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123616607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:17 Heat of formation + Delta-G solvation = -101.122376 kcal Electronic energy + Delta-G solvation = -24043.160048 eV Core-core repulsion = 20673.796364 eV Total energy + Delta-G solvation = -3369.363683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.19540 -38.08672 -37.03287 -34.24636 -33.33524 -32.58390 -32.34310 -30.29500 -28.30390 -26.80106 -26.00899 -23.33784 -22.68073 -21.81726 -20.81810 -19.83619 -19.42110 -17.08270 -16.24103 -15.99532 -15.79079 -15.55080 -15.30459 -14.92122 -14.64742 -14.19270 -14.10752 -13.64149 -13.41908 -13.23589 -12.92108 -12.71671 -12.35885 -12.13382 -11.99663 -11.93333 -11.65919 -11.50346 -11.40368 -10.99976 -10.95028 -10.80628 -10.58802 -10.39577 -10.32685 -10.30209 -9.93671 -9.76869 -9.69967 -9.41818 -8.74818 -7.89122 -7.70463 -6.18832 -4.26160 3.22088 3.28454 3.30475 3.30649 4.01013 4.11747 4.37027 4.48876 4.76124 4.89886 5.04592 5.09393 5.13366 5.15543 5.17234 5.29136 5.49506 5.53230 5.54706 5.62523 5.66875 5.70493 5.75792 5.86037 5.92071 5.96377 6.02616 6.08069 6.13762 6.21934 6.26890 6.34984 6.48789 6.71303 7.16824 7.29931 7.32478 7.43667 7.49179 7.64102 7.80135 7.94935 8.59689 8.75295 9.07624 9.40827 10.91157 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.004450 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.311740 B = 6291.110051 C = 7149.521735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.101 3.899 3 H 0.097 0.903 4 O -0.558 6.558 5 C -0.146 4.146 6 C 0.067 3.933 7 H 0.095 0.905 8 C -0.108 4.108 9 C -0.120 4.120 10 C -0.111 4.111 11 C 0.039 3.961 12 N -0.511 5.511 13 C 0.026 3.974 14 C 0.465 3.535 15 O -0.547 6.547 16 N -0.712 5.712 17 C 0.250 3.750 18 C -0.544 4.544 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.376 0.624 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.389 0.611 43 H 0.024 0.976 44 H 0.026 0.974 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 14.114 -10.417 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.041 3.959 3 H 0.114 0.886 4 O -0.364 6.364 5 C -0.184 4.184 6 C -0.041 4.041 7 H 0.113 0.887 8 C -0.146 4.146 9 C -0.158 4.158 10 C -0.149 4.149 11 C -0.089 4.089 12 N -0.234 5.234 13 C -0.106 4.106 14 C 0.249 3.751 15 O -0.428 6.428 16 N -0.360 5.360 17 C 0.129 3.871 18 C -0.583 4.583 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.224 0.776 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.222 0.778 43 H 0.042 0.958 44 H 0.044 0.956 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.659 15.278 -10.002 18.846 hybrid contribution -0.623 -2.266 0.327 2.373 sum -5.282 13.012 -9.675 17.054 Atomic orbital electron populations 1.22530 0.96813 1.02559 1.02408 1.21924 0.92260 0.96784 0.84910 0.88561 1.86601 1.73302 1.32269 1.44189 1.22412 0.96303 1.01169 0.98508 1.21887 0.93682 0.93507 0.95000 0.88735 1.21621 0.95756 0.95936 1.01240 1.21550 0.96069 0.99185 0.99004 1.21524 0.99638 0.95168 0.98573 1.22272 0.87579 0.96806 1.02201 1.62409 1.09916 1.09107 1.41989 1.22356 1.01943 0.90064 0.96188 1.21801 0.81560 0.82977 0.88787 1.90578 1.39184 1.63614 1.49375 1.46622 1.52146 1.11966 1.25313 1.19065 0.95364 0.91611 0.81033 1.21228 1.33889 0.96508 1.06629 0.91978 1.24952 0.94841 0.98988 0.95177 1.69974 1.36301 1.36675 1.09275 0.86433 0.79184 0.83973 0.77432 1.20460 1.20986 1.19748 0.92279 0.91981 0.91769 0.77627 0.90944 0.91691 0.91815 0.92037 0.91890 0.92448 0.92019 0.91854 0.91363 0.91743 0.88587 0.88241 0.77837 0.95787 0.95614 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 9.49 37.16 0.35 -1.43 16 2 C 0.10 1.19 3.43 -26.73 -0.09 1.10 16 3 H 0.10 1.10 6.36 -51.93 -0.33 0.77 16 4 O -0.56 -8.33 12.79 -35.23 -0.45 -8.78 16 5 C -0.15 -1.78 4.11 -26.73 -0.11 -1.89 16 6 C 0.07 0.96 1.41 -67.72 -0.10 0.86 16 7 H 0.10 1.77 5.09 -51.93 -0.26 1.50 16 8 C -0.11 -1.35 5.09 -26.65 -0.14 -1.48 16 9 C -0.12 -1.50 6.00 -26.61 -0.16 -1.66 16 10 C -0.11 -1.37 6.09 -26.65 -0.16 -1.53 16 11 C 0.04 0.57 5.06 -3.83 -0.02 0.55 16 12 N -0.51 -7.25 4.69 -228.12 -1.07 -8.32 16 13 C 0.03 0.37 5.33 -4.98 -0.03 0.35 16 14 C 0.46 8.76 7.22 -10.98 -0.08 8.68 16 15 O -0.55 -12.31 11.61 5.56 0.06 -12.25 16 16 N -0.71 -14.40 5.55 -61.47 -0.34 -14.74 16 17 C 0.25 6.51 5.43 -5.19 -0.03 6.48 16 18 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 19 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -25.97 13.29 55.43 0.74 -25.24 16 22 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.38 5.04 9.03 45.56 0.41 5.46 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.83 6.06 -51.93 -0.31 0.52 16 32 H 0.06 0.77 6.49 -51.93 -0.34 0.43 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.24 5.81 -51.93 -0.30 0.94 16 39 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.10 1.20 8.10 -51.93 -0.42 0.78 16 41 H 0.10 1.22 6.10 -51.93 -0.32 0.91 16 42 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16 43 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -31.41 347.11 -8.64 -40.05 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -6.82 Total: 11.55 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.97 Total: -3.18 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.68 Total: -48.29 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.39 Total: -21.03 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.41 -8.64 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123616607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.069 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds