Wall clock time and date at job start Tue Mar 31 2020 02:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00113 * 2 1 4 4 C 1.52993 * 109.47233 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47158 * 60.00450 * 4 3 2 6 6 C 1.53002 * 109.47637 * 300.00108 * 4 3 2 7 7 C 1.50705 * 109.47269 * 180.02562 * 4 3 2 8 8 O 1.21288 * 119.99774 * 0.02562 * 7 4 3 9 9 N 1.34771 * 120.00448 * 180.02562 * 7 4 3 10 10 C 1.46500 * 120.00602 * 180.02562 * 9 7 4 11 11 C 1.52993 * 109.47422 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47058 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99937 * 270.00095 * 12 11 10 14 14 H 1.08003 * 119.99855 * 144.92770 * 13 12 11 15 15 C 1.38814 * 120.00273 * 324.92932 * 13 12 11 16 16 N 1.31620 * 119.99838 * 337.93463 * 15 13 12 17 17 Si 1.86801 * 120.00091 * 157.93681 * 15 13 12 18 18 H 1.48501 * 109.46754 * 89.99914 * 17 15 13 19 19 H 1.48495 * 109.46949 * 209.99670 * 17 15 13 20 20 H 1.48495 * 109.47225 * 330.00128 * 17 15 13 21 21 C 1.46494 * 119.99631 * 90.00309 * 12 11 10 22 22 C 1.53008 * 117.49603 * 183.23516 * 21 12 11 23 23 C 1.53005 * 117.50060 * 114.58020 * 21 12 11 24 24 H 1.08994 * 109.47178 * 299.99899 * 1 2 3 25 25 H 1.09004 * 109.47100 * 59.99847 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46808 * 59.99980 * 3 2 1 28 28 H 1.08998 * 109.47423 * 300.00828 * 3 2 1 29 29 H 1.08998 * 109.47009 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.46937 * 299.99837 * 5 4 3 31 31 H 1.09008 * 109.46958 * 59.99577 * 5 4 3 32 32 H 1.08997 * 109.46736 * 300.00231 * 6 4 3 33 33 H 1.09003 * 109.46451 * 60.00042 * 6 4 3 34 34 H 1.08994 * 109.47223 * 179.97438 * 6 4 3 35 35 H 0.97000 * 119.99744 * 0.02562 * 9 7 4 36 36 H 1.09002 * 109.46594 * 59.99687 * 10 9 7 37 37 H 1.09002 * 109.46711 * 300.00837 * 10 9 7 38 38 H 1.09004 * 109.46724 * 60.00514 * 11 10 9 39 39 H 1.08991 * 109.47467 * 300.00375 * 11 10 9 40 40 H 0.96995 * 119.99672 * 176.06957 * 16 15 13 41 41 H 1.08998 * 115.55292 * 328.90743 * 21 12 11 42 42 H 1.09004 * 117.49709 * 0.02562 * 22 21 12 43 43 H 1.09001 * 117.49616 * 145.02232 * 22 21 12 44 44 H 1.08992 * 117.50031 * 214.97936 * 23 21 12 45 45 H 1.09007 * 117.49694 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9874 0.4252 -1.2483 6 6 3.9865 0.4256 1.2502 7 6 4.1484 2.5614 0.0013 8 8 3.4355 3.5426 0.0017 9 7 5.4887 2.7023 0.0014 10 6 6.0847 4.0406 0.0026 11 6 7.6098 3.9198 0.0031 12 7 8.2057 5.2582 0.0037 13 6 8.4846 5.8840 -1.1820 14 1 8.3731 6.9549 -1.2666 15 6 8.9106 5.1420 -2.2751 16 7 9.4581 3.9588 -2.0943 17 14 8.7069 5.8227 -4.0027 18 1 9.9161 6.6008 -4.3738 19 1 8.5274 4.7008 -4.9588 20 1 7.5154 6.7078 -4.0487 21 6 8.5032 5.9269 1.2727 22 6 9.0542 7.3528 1.2076 23 6 9.9731 6.1942 1.6028 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 5.0740 0.3396 -1.2481 30 1 3.5441 -0.5705 -1.2484 31 1 3.6660 0.9661 -2.1386 32 1 3.6645 0.9666 2.1399 33 1 3.5431 -0.5702 1.2501 34 1 5.0730 0.3391 1.2503 35 1 6.0589 1.9176 0.0007 36 1 5.7630 4.5807 0.8931 37 1 5.7629 4.5823 -0.8869 38 1 7.9318 3.3796 -0.8872 39 1 7.9311 3.3783 0.8927 40 1 9.7036 3.4160 -2.8597 41 1 7.8380 5.6817 2.1006 42 1 9.1949 7.7935 0.2205 43 1 8.7517 8.0456 1.9929 44 1 10.2748 6.1251 2.6479 45 1 10.7188 5.8720 0.8760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691217708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:18 Heat of formation + Delta-G solvation = -45.701122 kcal Electronic energy + Delta-G solvation = -23228.136966 eV Core-core repulsion = 19861.176528 eV Total energy + Delta-G solvation = -3366.960438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.02334 -37.91717 -37.11148 -34.80782 -34.74241 -33.16043 -30.76830 -27.91801 -27.35936 -27.26515 -25.64832 -24.52784 -22.63874 -21.52145 -21.18797 -19.82436 -19.13205 -17.12120 -16.30485 -16.04442 -15.98249 -15.62835 -15.37780 -14.94036 -14.79874 -14.42620 -13.97631 -13.61662 -13.43558 -13.29342 -12.67355 -12.62021 -12.23048 -12.13643 -11.94783 -11.90357 -11.61473 -11.57725 -11.10539 -11.05462 -10.80728 -10.73937 -10.71781 -10.34697 -10.14011 -9.87668 -9.77057 -9.66359 -9.44924 -9.27491 -8.58322 -8.48791 -6.66305 -5.87676 -3.47497 2.92859 3.23373 3.31957 3.39605 3.44419 3.94686 4.41004 4.62391 4.78528 4.85732 4.90550 5.12240 5.17438 5.22680 5.27107 5.30408 5.46511 5.52449 5.55330 5.64015 5.76440 5.80467 5.87981 5.89641 6.02015 6.09047 6.15045 6.19223 6.21898 6.28221 6.47742 6.51055 6.59917 6.84954 6.96375 7.00245 7.04797 7.19244 7.50902 7.74146 7.90139 8.38822 8.55139 9.06247 9.69077 10.23884 11.08932 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.004007 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.974456 B = 6985.742412 C = 7764.247226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.086 3.914 4 C -0.081 4.081 5 C -0.137 4.137 6 C -0.135 4.135 7 C 0.520 3.480 8 O -0.550 6.550 9 N -0.714 5.714 10 C 0.099 3.901 11 C 0.136 3.864 12 N -0.548 5.548 13 C -0.259 4.259 14 H 0.068 0.932 15 C 0.012 3.988 16 N -0.884 5.884 17 Si 0.896 3.104 18 H -0.285 1.285 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.119 3.881 22 C -0.195 4.195 23 C -0.220 4.220 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.398 0.602 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.031 0.969 40 H 0.255 0.745 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.204 -8.770 5.356 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C 0.009 3.991 4 C -0.084 4.084 5 C -0.194 4.194 6 C -0.193 4.193 7 C 0.305 3.695 8 O -0.429 6.429 9 N -0.364 5.364 10 C -0.026 4.026 11 C 0.009 3.991 12 N -0.264 5.264 13 C -0.388 4.388 14 H 0.085 0.915 15 C -0.188 4.188 16 N -0.526 5.526 17 Si 0.725 3.275 18 H -0.212 1.212 19 H -0.214 1.214 20 H -0.202 1.202 21 C 0.010 3.990 22 C -0.233 4.233 23 C -0.261 4.261 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.232 0.768 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.465 -8.313 5.210 15.089 hybrid contribution 0.053 0.285 -0.917 0.961 sum -11.412 -8.028 4.293 14.598 Atomic orbital electron populations 1.22705 0.81100 1.02447 1.00075 1.87790 1.19490 1.28030 1.95505 1.22223 0.91454 0.83880 1.01502 1.20717 0.94824 0.93917 0.98952 1.21795 1.01566 1.00693 0.95357 1.21785 1.01440 1.00751 0.95305 1.20243 0.82864 0.90178 0.76260 1.90680 1.61159 1.40615 1.50412 1.46034 1.06005 1.10613 1.73756 1.22329 0.97276 0.81681 1.01328 1.21101 0.87141 0.88115 1.02731 1.43228 1.67336 1.15845 1.00014 1.19083 1.39251 0.92938 0.87561 0.91463 1.25112 0.96938 0.97580 0.99191 1.70028 1.40263 1.12462 1.29832 0.86418 0.78318 0.78372 0.84442 1.21151 1.21383 1.20185 1.21234 0.92685 0.94843 0.90231 1.23041 1.06282 0.91868 1.02137 1.23358 0.97915 1.05160 0.99631 0.94145 0.94121 0.89739 0.92546 0.92481 0.91823 0.90748 0.92264 0.92369 0.90737 0.91931 0.76813 0.93178 0.91589 0.87642 0.95018 0.93489 0.89495 0.88423 0.90690 0.91176 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.48 9.35 -35.23 -0.33 -4.81 16 3 C 0.09 1.10 4.09 37.15 0.15 1.25 16 4 C -0.08 -1.04 0.70 -155.66 -0.11 -1.15 16 5 C -0.14 -1.59 8.23 37.16 0.31 -1.29 16 6 C -0.14 -1.47 8.22 37.16 0.31 -1.17 16 7 C 0.52 8.61 6.48 -10.99 -0.07 8.54 16 8 O -0.55 -11.18 15.98 5.55 0.09 -11.09 16 9 N -0.71 -11.73 5.34 -60.29 -0.32 -12.05 16 10 C 0.10 1.97 6.00 -4.04 -0.02 1.95 16 11 C 0.14 2.96 5.45 -4.04 -0.02 2.93 16 12 N -0.55 -13.08 2.78 -165.66 -0.46 -13.54 16 13 C -0.26 -6.79 8.63 -15.06 -0.13 -6.92 16 14 H 0.07 1.78 6.55 -52.48 -0.34 1.44 16 15 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 16 N -0.88 -24.04 11.33 55.49 0.63 -23.42 16 17 Si 0.90 21.10 29.61 -169.99 -5.03 16.06 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.12 2.50 6.56 -67.93 -0.45 2.06 16 22 C -0.20 -3.82 9.80 -26.69 -0.26 -4.08 16 23 C -0.22 -4.40 10.36 -26.69 -0.28 -4.68 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.74 8.10 -51.92 -0.42 0.32 16 28 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.06 0.69 7.56 -51.93 -0.39 0.30 16 30 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 31 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 34 H 0.06 0.62 7.57 -51.93 -0.39 0.22 16 35 H 0.40 5.60 7.31 -40.82 -0.30 5.30 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.11 2.56 5.35 -51.93 -0.28 2.28 16 39 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 40 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 41 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.10 2.08 6.37 -51.93 -0.33 1.75 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -29.71 364.43 -7.37 -37.08 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.88 Total: 7.19 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 0.45 Total: -0.90 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.15 Total: -49.01 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.24 Total: -15.90 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.71 -7.37 -37.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691217708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.624 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds