Wall clock time and date at job start Tue Mar 31 2020 02:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00113 * 2 1 4 4 C 1.52993 * 109.47233 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47158 * 60.00450 * 4 3 2 6 6 C 1.53002 * 109.47637 * 300.00108 * 4 3 2 7 7 C 1.50705 * 109.47269 * 180.02562 * 4 3 2 8 8 O 1.21288 * 119.99774 * 0.02562 * 7 4 3 9 9 N 1.34771 * 120.00448 * 180.02562 * 7 4 3 10 10 C 1.46500 * 120.00602 * 180.02562 * 9 7 4 11 11 C 1.52993 * 109.47422 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47058 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99937 * 270.00095 * 12 11 10 14 14 H 1.08003 * 119.99855 * 144.92770 * 13 12 11 15 15 C 1.38814 * 120.00273 * 324.92932 * 13 12 11 16 16 N 1.31620 * 119.99838 * 337.93463 * 15 13 12 17 17 Si 1.86801 * 120.00091 * 157.93681 * 15 13 12 18 18 H 1.48501 * 109.46754 * 89.99914 * 17 15 13 19 19 H 1.48495 * 109.46949 * 209.99670 * 17 15 13 20 20 H 1.48495 * 109.47225 * 330.00128 * 17 15 13 21 21 C 1.46494 * 119.99631 * 90.00309 * 12 11 10 22 22 C 1.53008 * 117.49603 * 183.23516 * 21 12 11 23 23 C 1.53005 * 117.50060 * 114.58020 * 21 12 11 24 24 H 1.08994 * 109.47178 * 299.99899 * 1 2 3 25 25 H 1.09004 * 109.47100 * 59.99847 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46808 * 59.99980 * 3 2 1 28 28 H 1.08998 * 109.47423 * 300.00828 * 3 2 1 29 29 H 1.08998 * 109.47009 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.46937 * 299.99837 * 5 4 3 31 31 H 1.09008 * 109.46958 * 59.99577 * 5 4 3 32 32 H 1.08997 * 109.46736 * 300.00231 * 6 4 3 33 33 H 1.09003 * 109.46451 * 60.00042 * 6 4 3 34 34 H 1.08994 * 109.47223 * 179.97438 * 6 4 3 35 35 H 0.97000 * 119.99744 * 0.02562 * 9 7 4 36 36 H 1.09002 * 109.46594 * 59.99687 * 10 9 7 37 37 H 1.09002 * 109.46711 * 300.00837 * 10 9 7 38 38 H 1.09004 * 109.46724 * 60.00514 * 11 10 9 39 39 H 1.08991 * 109.47467 * 300.00375 * 11 10 9 40 40 H 0.96995 * 119.99672 * 176.06957 * 16 15 13 41 41 H 1.08998 * 115.55292 * 328.90743 * 21 12 11 42 42 H 1.09004 * 117.49709 * 0.02562 * 22 21 12 43 43 H 1.09001 * 117.49616 * 145.02232 * 22 21 12 44 44 H 1.08992 * 117.50031 * 214.97936 * 23 21 12 45 45 H 1.09007 * 117.49694 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9874 0.4252 -1.2483 6 6 3.9865 0.4256 1.2502 7 6 4.1484 2.5614 0.0013 8 8 3.4355 3.5426 0.0017 9 7 5.4887 2.7023 0.0014 10 6 6.0847 4.0406 0.0026 11 6 7.6098 3.9198 0.0031 12 7 8.2057 5.2582 0.0037 13 6 8.4846 5.8840 -1.1820 14 1 8.3731 6.9549 -1.2666 15 6 8.9106 5.1420 -2.2751 16 7 9.4581 3.9588 -2.0943 17 14 8.7069 5.8227 -4.0027 18 1 9.9161 6.6008 -4.3738 19 1 8.5274 4.7008 -4.9588 20 1 7.5154 6.7078 -4.0487 21 6 8.5032 5.9269 1.2727 22 6 9.0542 7.3528 1.2076 23 6 9.9731 6.1942 1.6028 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 5.0740 0.3396 -1.2481 30 1 3.5441 -0.5705 -1.2484 31 1 3.6660 0.9661 -2.1386 32 1 3.6645 0.9666 2.1399 33 1 3.5431 -0.5702 1.2501 34 1 5.0730 0.3391 1.2503 35 1 6.0589 1.9176 0.0007 36 1 5.7630 4.5807 0.8931 37 1 5.7629 4.5823 -0.8869 38 1 7.9318 3.3796 -0.8872 39 1 7.9311 3.3783 0.8927 40 1 9.7036 3.4160 -2.8597 41 1 7.8380 5.6817 2.1006 42 1 9.1949 7.7935 0.2205 43 1 8.7517 8.0456 1.9929 44 1 10.2748 6.1251 2.6479 45 1 10.7188 5.8720 0.8760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691217708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:17 Heat of formation + Delta-G solvation = -64.154739 kcal Electronic energy + Delta-G solvation = -23228.937175 eV Core-core repulsion = 19861.176528 eV Total energy + Delta-G solvation = -3367.760646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.30637 -39.03689 -38.70383 -36.34123 -35.86740 -34.90441 -32.60332 -29.47482 -28.26624 -28.25317 -26.56004 -26.33900 -24.08724 -23.06536 -22.73848 -21.57706 -20.44788 -18.37497 -17.95593 -17.38295 -17.24777 -16.91266 -16.65048 -16.41863 -16.27563 -15.73123 -15.62314 -14.85776 -14.68878 -14.46659 -14.20104 -13.95790 -13.76992 -13.29627 -13.27451 -13.06040 -12.92955 -12.77876 -12.61944 -12.52720 -12.38054 -12.14834 -12.05549 -11.92434 -11.72204 -11.66944 -11.38704 -10.96418 -10.73912 -10.65418 -10.50097 -10.04871 -8.57913 -7.85108 -5.48475 1.41498 1.46091 1.54623 1.59011 2.01931 2.47920 2.91854 3.13291 3.39727 3.47816 3.64451 3.78839 3.87548 4.15494 4.29319 4.36236 4.40453 4.44208 4.48311 4.51536 4.60310 4.61358 4.61932 4.76913 4.79259 4.83250 4.87517 4.90890 4.94050 4.99545 5.03666 5.21899 5.28341 5.30802 5.32556 5.45726 5.54273 5.66271 5.75762 6.14012 6.41428 6.56719 7.10705 7.21959 7.80025 8.29169 9.07105 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.004007 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.974456 B = 6985.742412 C = 7764.247226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.092 3.908 4 C -0.074 4.074 5 C -0.133 4.133 6 C -0.131 4.131 7 C 0.518 3.482 8 O -0.591 6.591 9 N -0.706 5.706 10 C 0.121 3.879 11 C 0.144 3.856 12 N -0.566 5.566 13 C -0.265 4.265 14 H 0.058 0.942 15 C -0.028 4.028 16 N -0.906 5.906 17 Si 0.946 3.054 18 H -0.284 1.284 19 H -0.287 1.287 20 H -0.279 1.279 21 C 0.098 3.902 22 C -0.185 4.185 23 C -0.211 4.211 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.106 0.894 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.412 0.588 36 H 0.047 0.953 37 H 0.031 0.969 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.253 0.747 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.744 -9.772 6.464 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C 0.014 3.986 4 C -0.077 4.077 5 C -0.191 4.191 6 C -0.188 4.188 7 C 0.305 3.695 8 O -0.472 6.472 9 N -0.357 5.357 10 C -0.005 4.005 11 C 0.017 3.983 12 N -0.283 5.283 13 C -0.395 4.395 14 H 0.076 0.924 15 C -0.226 4.226 16 N -0.550 5.550 17 Si 0.774 3.226 18 H -0.210 1.210 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.010 4.010 22 C -0.223 4.223 23 C -0.251 4.251 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.125 0.875 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.999 -9.336 6.331 16.468 hybrid contribution 0.177 0.610 -1.209 1.366 sum -11.822 -8.726 5.122 15.560 Atomic orbital electron populations 1.22939 0.79517 1.04075 1.00541 1.87766 1.21188 1.26883 1.95522 1.22063 0.91488 0.84491 1.00534 1.20693 0.94747 0.91561 1.00735 1.21799 1.02180 1.01019 0.94076 1.21787 1.02304 1.00913 0.93809 1.20945 0.82371 0.91378 0.74790 1.90659 1.61973 1.42419 1.52111 1.45872 1.06405 1.09813 1.73574 1.21819 0.96210 0.83056 0.99459 1.20965 0.87820 0.87321 1.02198 1.43428 1.67961 1.16468 1.00471 1.19194 1.38576 0.92769 0.88946 0.92428 1.25641 0.97307 0.98061 1.01637 1.70113 1.41343 1.13255 1.30245 0.85628 0.77911 0.77666 0.81350 1.21035 1.21305 1.20442 1.21540 0.93804 0.95807 0.89816 1.23054 1.05403 0.91787 1.02069 1.23261 0.96316 1.05002 1.00550 0.93540 0.93849 0.87538 0.93269 0.93856 0.91009 0.89171 0.93451 0.92672 0.89359 0.90734 0.75192 0.93448 0.95032 0.89977 0.93478 0.93717 0.87113 0.90753 0.87216 0.87835 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.39 -8.37 9.35 -148.98 -1.39 -9.77 16 3 C 0.09 2.27 4.09 71.98 0.29 2.56 16 4 C -0.07 -1.81 0.70 -52.93 -0.04 -1.85 16 5 C -0.13 -2.89 8.23 71.98 0.59 -2.30 16 6 C -0.13 -2.54 8.22 71.98 0.59 -1.95 16 7 C 0.52 17.01 6.48 87.66 0.57 17.58 16 8 O -0.59 -24.32 15.98 -3.05 -0.05 -24.37 16 9 N -0.71 -22.84 5.34 -463.06 -2.47 -25.31 16 10 C 0.12 4.85 6.00 86.38 0.52 5.37 16 11 C 0.14 6.24 5.45 86.38 0.47 6.71 16 12 N -0.57 -27.09 2.78 -678.03 -1.88 -28.97 16 13 C -0.26 -14.08 8.63 84.03 0.73 -13.36 16 14 H 0.06 3.12 6.55 -2.91 -0.02 3.10 16 15 C -0.03 -1.53 4.96 84.86 0.42 -1.10 16 16 N -0.91 -49.94 11.33 21.65 0.25 -49.69 16 17 Si 0.95 43.98 29.61 68.60 2.03 46.01 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 C 0.10 4.00 6.56 45.00 0.30 4.30 16 22 C -0.19 -6.96 9.80 30.62 0.30 -6.66 16 23 C -0.21 -8.12 10.36 30.62 0.32 -7.80 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.27 8.10 -2.38 -0.02 1.25 16 28 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 29 H 0.07 1.43 7.56 -2.39 -0.02 1.41 16 30 H 0.09 1.70 7.68 -2.39 -0.02 1.68 16 31 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.52 7.68 -2.39 -0.02 1.50 16 34 H 0.07 1.27 7.57 -2.39 -0.02 1.25 16 35 H 0.41 11.09 7.31 -92.71 -0.68 10.41 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 4.03 5.35 -2.38 -0.01 4.02 16 39 H 0.05 1.87 8.07 -2.39 -0.02 1.85 16 40 H 0.25 13.51 8.32 -92.71 -0.77 12.74 16 41 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 42 H 0.07 3.16 6.37 -2.38 -0.02 3.14 16 43 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 44 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 45 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -64.49 364.43 3.06 -61.42 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.28 Total: 27.56 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.31 Total: 3.12 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -4.11 Total: -103.98 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.44 Total: -34.13 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -64.49 3.06 -61.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691217708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.732 kcal (2) G-P(sol) polarization free energy of solvation -64.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds