Wall clock time and date at job start Tue Mar 31 2020 03:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99567 * 2 1 4 4 H 1.48495 * 109.47407 * 240.00116 * 3 2 1 5 5 H 1.48500 * 109.47105 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46679 * 120.00277 * 3 2 1 7 7 C 1.38809 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99888 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00022 * 359.97438 * 7 2 1 10 10 S 1.65599 * 119.99930 * 179.97438 * 9 7 2 11 11 O 1.42098 * 104.28082 * 308.93169 * 10 9 7 12 12 O 1.42096 * 104.27651 * 181.07122 * 10 9 7 13 13 C 1.81398 * 104.44798 * 64.99887 * 10 9 7 14 14 C 1.50708 * 109.47294 * 179.97438 * 13 10 9 15 15 C 1.38372 * 119.84796 * 270.28026 * 14 13 10 16 16 C 1.37938 * 120.14963 * 180.28044 * 15 14 13 17 17 C 1.39633 * 119.84852 * 359.44003 * 16 15 14 18 18 C 1.47723 * 120.15316 * 180.30600 * 17 16 15 19 19 O 1.21471 * 119.99606 * 359.97438 * 18 17 16 20 20 O 1.34709 * 120.00179 * 179.97438 * 18 17 16 21 21 C 1.39630 * 119.69783 * 0.27990 * 17 16 15 22 22 C 1.37948 * 119.84903 * 359.97438 * 21 17 16 23 23 H 0.96991 * 120.00189 * 359.97438 * 1 2 3 24 24 H 0.96991 * 119.99861 * 0.02562 * 9 7 2 25 25 H 1.09000 * 109.47663 * 60.00056 * 13 10 9 26 26 H 1.08996 * 109.47570 * 299.99777 * 13 10 9 27 27 H 1.07998 * 119.92432 * 0.02562 * 15 14 13 28 28 H 1.08002 * 120.07979 * 179.72201 * 16 15 14 29 29 H 0.96694 * 117.00098 * 179.97438 * 20 18 17 30 30 H 1.08004 * 120.07581 * 180.02562 * 21 17 16 31 31 H 1.07997 * 119.92171 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 16 2.1538 -3.8221 -0.0018 11 8 3.0776 -3.6925 -1.0737 12 8 1.1367 -4.8141 -0.0272 13 6 3.0243 -3.8435 1.5895 14 6 3.8229 -5.1161 1.7082 15 6 3.2442 -6.2429 2.2650 16 6 3.9713 -7.4093 2.3820 17 6 5.2904 -7.4545 1.9263 18 6 6.0731 -8.7020 2.0421 19 8 5.5694 -9.6914 2.5351 20 8 7.3452 -8.7425 1.6011 21 6 5.8662 -6.3154 1.3602 22 6 5.1293 -5.1540 1.2542 23 1 -0.4850 0.8399 0.0004 24 1 0.3558 -2.3881 -0.0005 25 1 2.2987 -3.7934 2.4014 26 1 3.6950 -2.9864 1.6484 27 1 2.2223 -6.2079 2.6125 28 1 3.5199 -8.2868 2.8209 29 1 7.8172 -9.5807 1.6985 30 1 6.8859 -6.3437 1.0054 31 1 5.5737 -4.2722 0.8169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040605445.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:52 Heat of formation + Delta-G solvation = -167.188501 kcal Electronic energy + Delta-G solvation = -19624.414079 eV Core-core repulsion = 16189.720478 eV Total energy + Delta-G solvation = -3434.693600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.055 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.49145 -39.92885 -37.88717 -37.13686 -36.75483 -36.44319 -34.21583 -32.83753 -32.14247 -29.11533 -26.41572 -24.72934 -23.81051 -22.00937 -20.17601 -19.92990 -19.20041 -18.55199 -18.46468 -17.34967 -16.77938 -16.69913 -16.38904 -16.22442 -15.99187 -15.53155 -15.29304 -14.60519 -14.25311 -13.92447 -13.78794 -13.55492 -13.08986 -12.99482 -12.95708 -12.89441 -12.78294 -12.63175 -12.35219 -12.14145 -12.12757 -11.84091 -11.81050 -11.69416 -10.23471 -10.12656 -9.85961 -8.32053 -5.86100 -0.77380 -0.17910 0.25274 1.42014 1.51981 1.56317 1.61902 1.99644 2.17347 2.53665 2.63740 2.97627 3.21670 3.42497 3.52450 3.72473 3.89209 4.02421 4.23279 4.28016 4.47642 4.58043 4.80640 4.94759 5.09024 5.10291 5.20833 5.35247 5.52385 5.61135 5.69919 6.74266 6.92774 6.97444 7.32454 8.85778 Molecular weight = 285.05amu Principal moments of inertia in cm(-1) A = 0.034795 B = 0.003922 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.525769 B = 7136.890317 C = 7510.817071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.020 4.020 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.312 4.312 8 H 0.116 0.884 9 N -0.977 5.977 10 S 2.580 3.420 11 O -0.992 6.992 12 O -1.013 7.013 13 C -0.590 4.590 14 C -0.056 4.056 15 C -0.134 4.134 16 C -0.056 4.056 17 C -0.147 4.147 18 C 0.539 3.461 19 O -0.546 6.546 20 O -0.500 6.500 21 C -0.050 4.050 22 C -0.136 4.136 23 H 0.273 0.727 24 H 0.404 0.596 25 H 0.155 0.845 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.435 0.565 30 H 0.168 0.832 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.756 -9.657 6.447 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.222 4.222 3 Si 0.808 3.192 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.180 1.180 7 C -0.447 4.447 8 H 0.134 0.866 9 N -0.727 5.727 10 S 2.675 3.325 11 O -0.983 6.983 12 O -1.003 7.003 13 C -0.716 4.716 14 C -0.058 4.058 15 C -0.153 4.153 16 C -0.074 4.074 17 C -0.149 4.149 18 C 0.385 3.615 19 O -0.438 6.438 20 O -0.314 6.314 21 C -0.068 4.068 22 C -0.154 4.154 23 H 0.082 0.918 24 H 0.238 0.762 25 H 0.173 0.827 26 H 0.176 0.824 27 H 0.168 0.832 28 H 0.168 0.832 29 H 0.298 0.702 30 H 0.185 0.815 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 12.490 -10.137 5.835 17.111 hybrid contribution -0.164 0.587 0.617 0.867 sum 12.326 -9.550 6.452 16.875 Atomic orbital electron populations 1.69796 1.07463 1.28894 1.50659 1.26077 0.96357 1.02635 0.97129 0.85112 0.77787 0.76724 0.79600 1.19501 1.21162 1.17952 1.19618 0.92789 0.83681 1.48626 0.86622 1.51487 1.16751 1.19620 1.84883 1.06649 0.74042 0.72524 0.79250 1.93469 1.66398 1.86345 1.52059 1.93429 1.57503 1.60664 1.88707 1.29814 1.13475 1.02774 1.25557 1.19655 0.94920 0.93443 0.97740 1.21373 1.01557 0.92043 1.00338 1.21397 0.92168 0.98426 0.95387 1.19283 0.95061 0.92820 1.07690 1.20724 0.80397 0.87274 0.73143 1.90876 1.71771 1.37454 1.43690 1.84511 1.25057 1.45547 1.76317 1.21699 1.01156 0.90283 0.93645 1.21509 0.93383 1.00246 1.00310 0.91791 0.76234 0.82672 0.82448 0.83158 0.83231 0.70244 0.81455 0.82885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.40 13.06 21.65 0.28 -49.12 16 2 C -0.02 -0.99 5.50 84.86 0.47 -0.52 16 3 Si 0.98 38.66 29.55 68.60 2.03 40.69 16 4 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 5 H -0.29 -11.29 7.11 99.48 0.71 -10.59 16 6 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 7 C -0.31 -15.10 9.49 84.03 0.80 -14.30 16 8 H 0.12 5.07 7.82 -2.91 -0.02 5.05 16 9 N -0.98 -45.70 5.65 -54.26 -0.31 -46.01 16 10 S 2.58 105.21 5.41 -56.49 -0.31 104.91 16 11 O -0.99 -45.80 17.76 -127.65 -2.27 -48.07 16 12 O -1.01 -45.63 18.08 -127.65 -2.31 -47.94 16 13 C -0.59 -17.60 6.13 71.24 0.44 -17.16 16 14 C -0.06 -1.57 5.15 -19.80 -0.10 -1.67 16 15 C -0.13 -3.54 9.68 22.23 0.22 -3.33 16 16 C -0.06 -1.37 9.60 22.54 0.22 -1.16 16 17 C -0.15 -3.46 5.87 -20.10 -0.12 -3.58 16 18 C 0.54 11.73 8.27 70.33 0.58 12.31 16 19 O -0.55 -14.80 17.13 19.93 0.34 -14.45 16 20 O -0.50 -7.08 12.68 -56.19 -0.71 -7.79 16 21 C -0.05 -1.09 9.62 22.54 0.22 -0.87 16 22 C -0.14 -3.40 9.68 22.23 0.22 -3.18 16 23 H 0.27 13.81 8.31 -92.72 -0.77 13.04 16 24 H 0.40 19.96 7.98 -96.76 -0.77 19.19 16 25 H 0.16 4.04 8.08 -2.39 -0.02 4.02 16 26 H 0.16 4.19 8.08 -2.39 -0.02 4.17 16 27 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 28 H 0.15 3.33 7.65 -2.91 -0.02 3.30 16 29 H 0.44 1.99 9.11 -74.06 -0.67 1.31 16 30 H 0.17 2.68 7.61 -2.91 -0.02 2.65 16 31 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -69.90 300.40 -0.57 -70.47 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -0.25 Total: 30.78 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 2.93 Total: -33.46 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -0.02 Total: -95.12 kcal Atomic # 8 Polarization: -113.30 SS G_CDS: -4.95 Total: -118.25 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 16 Polarization: 105.21 SS G_CDS: -0.31 Total: 104.91 kcal Total: -69.90 -0.57 -70.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040605445.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.720 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds