Wall clock time and date at job start Tue Mar 31 2020 03:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99772 * 2 1 4 4 C 1.53001 * 109.46953 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47148 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47178 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99781 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00154 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99670 * 180.02562 * 7 6 5 10 10 C 1.53117 * 109.51970 * 179.97438 * 9 7 6 11 11 C 1.53034 * 109.27588 * 182.37544 * 10 9 7 12 12 N 1.46846 * 109.52689 * 59.17989 * 11 10 9 13 13 C 1.46901 * 111.00467 * 174.16153 * 12 11 10 14 14 C 1.50695 * 109.47025 * 64.90491 * 13 12 11 15 15 H 1.07995 * 120.00145 * 354.72249 * 14 13 12 16 16 C 1.37875 * 119.99857 * 174.99821 * 14 13 12 17 17 N 1.31517 * 119.99985 * 359.72866 * 16 14 13 18 18 Si 1.86802 * 120.00298 * 179.72315 * 16 14 13 19 19 H 1.48499 * 109.46967 * 89.99936 * 18 16 14 20 20 H 1.48494 * 109.47431 * 210.00424 * 18 16 14 21 21 H 1.48504 * 109.46857 * 330.00422 * 18 16 14 22 22 C 1.46846 * 111.19666 * 298.26037 * 12 11 10 23 23 C 1.53043 * 109.52705 * 61.73864 * 22 12 11 24 24 H 1.09001 * 109.47406 * 59.99763 * 1 2 3 25 25 H 1.08994 * 109.47243 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47222 * 300.00092 * 1 2 3 27 27 H 1.08996 * 109.47012 * 59.99904 * 3 2 1 28 28 H 1.09001 * 109.47011 * 299.99503 * 3 2 1 29 29 H 1.09003 * 109.47291 * 59.99352 * 4 3 2 30 30 H 1.09002 * 109.47182 * 299.99617 * 4 3 2 31 31 H 1.09003 * 109.47385 * 59.99616 * 5 4 3 32 32 H 1.08998 * 109.47388 * 300.00145 * 5 4 3 33 33 H 0.96996 * 120.00128 * 0.02562 * 6 5 4 34 34 H 1.08997 * 109.52047 * 300.12343 * 9 7 6 35 35 H 1.09002 * 109.50148 * 62.43599 * 10 9 7 36 36 H 1.08998 * 109.50646 * 302.31875 * 10 9 7 37 37 H 1.09006 * 109.46434 * 299.16588 * 11 10 9 38 38 H 1.09003 * 109.45468 * 179.19093 * 11 10 9 39 39 H 1.09006 * 109.46836 * 304.90409 * 13 12 11 40 40 H 1.09000 * 109.47144 * 184.90806 * 13 12 11 41 41 H 0.97005 * 120.00330 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.46431 * 181.75597 * 22 12 11 43 43 H 1.09001 * 109.46282 * 301.72122 * 22 12 11 44 44 H 1.08994 * 109.50185 * 180.87989 * 23 22 12 45 45 H 1.08996 * 109.49882 * 60.75716 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1577 2.5824 -0.0013 6 7 5.6181 2.4668 -0.0013 7 6 6.3820 3.5772 -0.0023 8 8 5.8604 4.6721 -0.0037 9 6 7.8844 3.4582 -0.0029 10 6 8.5084 4.8565 -0.0047 11 6 10.0322 4.7296 -0.0652 12 7 10.4163 4.0011 -1.2810 13 6 11.8761 3.9804 -1.4435 14 6 12.4959 3.1961 -0.3158 15 1 11.8780 2.8296 0.4905 16 6 13.8527 2.9513 -0.3107 17 7 14.6052 3.3976 -1.2926 18 14 14.6224 1.9857 1.0911 19 1 14.6140 0.5385 0.7584 20 1 16.0218 2.4388 1.2945 21 1 13.8429 2.2122 2.3347 22 6 9.8676 2.6390 -1.2795 23 6 8.3387 2.7034 -1.2553 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8567 0.6439 -0.8908 30 1 3.8574 0.6437 0.8892 31 1 3.8364 3.1237 0.8887 32 1 3.8357 3.1232 -0.8912 33 1 6.0353 1.5911 -0.0013 34 1 8.2071 2.9160 0.8859 35 1 8.2229 5.3835 0.9057 36 1 8.1547 5.4117 -0.8734 37 1 10.3865 4.1862 0.8109 38 1 10.4790 5.7237 -0.0811 39 1 12.2578 5.0013 -1.4288 40 1 12.1292 3.5115 -2.3944 41 1 15.5598 3.2251 -1.2892 42 1 10.1948 2.1146 -2.1773 43 1 10.2226 2.1054 -0.3978 44 1 7.9321 1.6923 -1.2384 45 1 7.9824 3.2248 -2.1437 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049753856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:12 Heat of formation + Delta-G solvation = -100.696963 kcal Electronic energy + Delta-G solvation = -22424.628638 eV Core-core repulsion = 19055.283402 eV Total energy + Delta-G solvation = -3369.345236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.06267 -38.44285 -37.73825 -35.56003 -33.72463 -32.32871 -31.64258 -30.20718 -27.71982 -26.90278 -25.40509 -24.10872 -22.46249 -22.11447 -21.68724 -20.21541 -19.12657 -17.18839 -16.80206 -16.73386 -16.42575 -15.89391 -15.42074 -15.17525 -14.97327 -14.41438 -14.19593 -14.07599 -13.79843 -13.20556 -12.97741 -12.79913 -12.43988 -12.30490 -12.23200 -12.04789 -11.76671 -11.52831 -11.46542 -11.09953 -10.98120 -10.76189 -10.55913 -10.46615 -10.40007 -10.12037 -9.88726 -9.82942 -9.68679 -9.37289 -9.16732 -8.44102 -7.15878 -6.03159 -4.12777 2.72255 2.92734 3.25649 3.33050 3.35216 3.50515 4.39063 4.50549 4.58264 4.67738 4.86503 4.89909 4.93550 4.96614 5.03550 5.09540 5.14274 5.23560 5.25565 5.27715 5.33755 5.56991 5.69387 5.74749 5.78544 5.99495 6.07432 6.12311 6.28108 6.34264 6.37069 6.52614 6.66797 6.69390 6.75325 6.89999 7.30424 7.43678 7.52388 7.89467 8.06874 8.25265 8.29245 8.32612 8.97924 9.54037 11.01517 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.002695 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.038639 B =10385.594726 C =10895.466518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.735 5.735 7 C 0.522 3.478 8 O -0.541 6.541 9 C -0.105 4.105 10 C -0.094 4.094 11 C 0.062 3.938 12 N -0.542 5.542 13 C 0.186 3.814 14 C -0.549 4.549 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.890 5.890 18 Si 0.889 3.111 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.066 3.934 23 C -0.105 4.105 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.402 0.598 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.035 0.965 41 H 0.262 0.738 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.059 0.941 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.868 -5.591 2.703 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.170 4.170 5 C -0.002 4.002 6 N -0.388 5.388 7 C 0.309 3.691 8 O -0.417 6.417 9 C -0.127 4.127 10 C -0.132 4.132 11 C -0.066 4.066 12 N -0.266 5.266 13 C 0.061 3.939 14 C -0.588 4.588 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.063 4.063 23 C -0.144 4.144 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.237 0.763 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.151 -4.681 2.226 24.701 hybrid contribution 0.874 -1.267 1.516 2.161 sum -23.277 -5.948 3.743 24.314 Atomic orbital electron populations 1.22752 0.80750 1.02882 1.00102 1.87866 1.19935 1.27900 1.95473 1.22388 0.93348 0.84817 1.00723 1.21686 0.93839 0.97132 1.04298 1.21118 0.80393 0.96120 1.02523 1.46017 1.06313 1.09618 1.76872 1.20967 0.89892 0.83660 0.74553 1.90668 1.75260 1.26749 1.49061 1.21426 0.89718 1.00554 1.00959 1.21451 0.95607 0.93749 1.02417 1.21895 0.92810 0.99027 0.92898 1.62444 1.14867 1.13920 1.35399 1.19755 0.80358 0.97093 0.96740 1.21746 0.93249 1.35418 1.08382 0.92541 1.24975 0.97358 0.95697 0.95836 1.69944 1.05764 1.45609 1.31556 0.86652 0.78682 0.80282 0.82730 1.20654 1.21151 1.20010 1.21817 0.91233 0.91835 1.01384 1.21643 0.97917 0.98464 0.96332 0.93945 0.89522 0.93987 0.92900 0.92849 0.90193 0.90290 0.91491 0.91391 0.76336 0.88949 0.91930 0.90969 0.94527 0.91354 0.95406 0.94704 0.92809 0.91291 0.94126 0.92196 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.39 10.70 -35.23 -0.38 -3.77 16 3 C 0.06 0.45 5.94 37.16 0.22 0.68 16 4 C -0.13 -0.94 5.70 -26.73 -0.15 -1.09 16 5 C 0.12 1.10 5.67 -4.04 -0.02 1.08 16 6 N -0.73 -7.59 5.46 -60.29 -0.33 -7.92 16 7 C 0.52 7.30 7.16 -10.98 -0.08 7.22 16 8 O -0.54 -9.44 15.98 5.56 0.09 -9.35 16 9 C -0.11 -1.51 2.59 -91.65 -0.24 -1.74 16 10 C -0.09 -1.55 4.68 -26.65 -0.12 -1.67 16 11 C 0.06 1.21 5.12 -3.84 -0.02 1.19 16 12 N -0.54 -11.46 4.86 -236.11 -1.15 -12.61 16 13 C 0.19 4.75 5.12 -4.98 -0.03 4.72 16 14 C -0.55 -14.79 7.72 -34.44 -0.27 -15.06 16 15 H 0.06 1.50 5.86 -52.49 -0.31 1.19 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.07 1.22 5.03 -3.83 -0.02 1.20 16 23 C -0.11 -1.51 5.26 -26.65 -0.14 -1.65 16 24 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 3.27 7.96 -40.82 -0.32 2.94 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 37 H 0.04 0.75 6.86 -51.93 -0.36 0.39 16 38 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 39 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 40 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 43 H 0.04 0.80 6.73 -51.93 -0.35 0.45 16 44 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -31.84 359.15 -8.53 -40.37 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.05 Total: -0.83 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 0.15 Total: -2.17 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.74 Total: -45.78 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.29 Total: -13.13 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.84 -8.53 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049753856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.325 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds