Wall clock time and date at job start Tue Mar 31 2020 03:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47427 * 2 1 4 4 C 1.46504 * 120.00083 * 270.00173 * 3 2 1 5 5 C 1.50702 * 109.46864 * 269.99770 * 4 3 2 6 6 H 1.07995 * 120.00372 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99995 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00411 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99703 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47508 * 89.99728 * 9 7 5 11 11 H 1.48507 * 109.47078 * 209.99541 * 9 7 5 12 12 H 1.48496 * 109.47476 * 329.99473 * 9 7 5 13 13 C 1.34774 * 120.00196 * 89.99732 * 3 2 1 14 14 O 1.21279 * 120.00396 * 180.02562 * 13 3 2 15 15 C 1.50707 * 120.00098 * 0.02562 * 13 3 2 16 16 N 1.46892 * 109.47032 * 186.09314 * 15 13 3 17 17 C 1.47019 * 110.99803 * 189.95208 * 16 15 13 18 18 C 1.53093 * 109.25901 * 177.60402 * 17 16 15 19 19 H 1.08991 * 109.51513 * 296.92113 * 18 17 16 20 20 C 1.53003 * 109.50631 * 176.82676 * 18 17 16 21 21 O 1.43016 * 109.25522 * 56.85546 * 18 17 16 22 22 C 1.43014 * 113.73814 * 301.32805 * 21 18 17 23 23 C 1.47016 * 111.00275 * 66.32653 * 16 15 13 24 24 H 1.09003 * 109.50241 * 302.36252 * 23 16 15 25 25 C 1.52993 * 109.50994 * 62.45151 * 23 16 15 26 26 H 1.08998 * 109.47528 * 300.00292 * 1 2 3 27 27 H 1.09003 * 109.47289 * 60.00131 * 1 2 3 28 28 H 1.08999 * 109.47599 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47055 * 239.99477 * 2 1 3 30 30 H 1.09003 * 109.46799 * 120.00069 * 2 1 3 31 31 H 1.08999 * 109.47086 * 29.99450 * 4 3 2 32 32 H 1.09000 * 109.47019 * 149.99684 * 4 3 2 33 33 H 0.96996 * 120.00755 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46634 * 66.09051 * 15 13 3 35 35 H 1.09001 * 109.46615 * 306.09742 * 15 13 3 36 36 H 1.08991 * 109.50777 * 297.54759 * 17 16 15 37 37 H 1.09007 * 109.50535 * 57.67524 * 17 16 15 38 38 H 1.09001 * 109.46434 * 60.00845 * 20 18 17 39 39 H 1.09003 * 109.47175 * 180.02562 * 20 18 17 40 40 H 1.08999 * 109.47249 * 300.00686 * 20 18 17 41 41 H 1.08998 * 109.50692 * 298.73128 * 22 21 18 42 42 H 1.09004 * 109.50681 * 178.60889 * 22 21 18 43 43 H 1.08994 * 109.47088 * 60.00188 * 25 23 16 44 44 H 1.09001 * 109.46948 * 300.00404 * 25 23 16 45 45 H 1.09002 * 109.47273 * 180.02562 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0962 7 6 4.1492 2.3895 -2.8779 8 7 5.3911 2.1824 -3.2579 9 14 3.0129 3.4350 -3.9292 10 1 3.1163 4.8553 -3.5081 11 1 3.4058 3.3119 -5.3560 12 1 1.6132 2.9691 -3.7593 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9923 1.3059 2.4724 16 7 2.1695 2.2486 3.5849 17 6 2.1665 1.5459 4.8763 18 6 2.4132 2.5551 6.0008 19 1 3.4014 2.9989 5.8814 20 6 2.3327 1.8432 7.3528 21 8 1.4185 3.5809 5.9404 22 6 1.3937 4.2862 4.6966 23 6 1.1368 3.2946 3.5588 24 1 1.1733 3.8183 2.6036 25 6 -0.2418 2.6561 3.7391 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.5818 1.6876 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 5.7172 2.5728 -4.0837 34 1 2.6976 0.4817 2.5785 35 1 0.9742 0.9168 2.4844 36 1 1.2009 1.0631 5.0257 37 1 2.9553 0.7935 4.8831 38 1 3.0889 1.0594 7.3962 39 1 2.5079 2.5623 8.1530 40 1 1.3436 1.4010 7.4723 41 1 2.3523 4.7805 4.5392 42 1 0.5983 5.0314 4.7165 43 1 -0.2782 2.1340 4.6951 44 1 -0.4225 1.9474 2.9309 45 1 -1.0071 3.4321 3.7192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079955485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:18 Heat of formation + Delta-G solvation = -67.618350 kcal Electronic energy + Delta-G solvation = -24154.116710 eV Core-core repulsion = 20786.205870 eV Total energy + Delta-G solvation = -3367.910840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.33734 -38.84114 -35.92676 -35.17993 -33.23591 -32.71666 -30.55160 -30.27716 -28.55138 -27.04473 -26.35345 -24.41184 -22.99837 -22.63790 -21.70537 -19.33336 -18.23618 -16.94782 -16.77911 -16.51206 -16.16496 -15.72396 -15.40340 -14.96821 -14.49192 -14.26407 -13.89969 -13.61166 -13.50845 -13.12051 -13.05260 -12.58250 -12.46280 -12.33884 -12.20448 -12.13644 -11.94185 -11.78518 -11.59140 -11.42446 -11.22695 -10.99039 -10.95402 -10.71013 -10.51370 -10.34450 -10.13197 -9.64025 -9.51187 -8.93169 -8.58007 -8.19530 -7.69641 -6.07615 -4.06141 3.29028 3.34751 3.36173 3.36816 3.50214 3.72011 4.07386 4.40156 4.68675 4.84520 4.88282 5.03294 5.06694 5.12264 5.17420 5.26327 5.29693 5.39969 5.42462 5.47660 5.49108 5.53041 5.56573 5.60621 5.65812 5.69593 5.84345 5.89447 5.93267 5.98778 6.00842 6.12250 6.23686 6.36263 6.68322 6.89941 6.99704 7.03592 7.19721 7.37290 7.62440 8.27468 8.48495 8.95166 9.03268 9.52818 11.05901 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.004356 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.605933 B = 6425.700656 C = 6689.575104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.510 3.490 14 O -0.522 6.522 15 C 0.034 3.966 16 N -0.511 5.511 17 C 0.021 3.979 18 C 0.090 3.910 19 H 0.067 0.933 20 C -0.143 4.143 21 O -0.384 6.384 22 C 0.073 3.927 23 C 0.039 3.961 24 H 0.110 0.890 25 C -0.182 4.182 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.571 -3.931 16.609 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.398 6.398 15 C -0.097 4.097 16 N -0.235 5.235 17 C -0.107 4.107 18 C 0.032 3.968 19 H 0.085 0.915 20 C -0.200 4.200 21 O -0.303 6.303 22 C -0.004 4.004 23 C -0.069 4.069 24 H 0.128 0.872 25 C -0.241 4.241 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.872 -3.001 16.534 20.014 hybrid contribution -1.025 -0.110 -0.963 1.410 sum -11.896 -3.111 15.571 19.841 Atomic orbital electron populations 1.22242 0.96898 1.01547 1.02100 1.21419 0.93267 0.84029 1.03050 1.47946 1.64494 1.13351 1.06990 1.19616 0.97258 0.93300 0.80055 1.21336 0.95366 1.32842 1.07045 0.90778 1.24855 0.94974 0.95810 0.97358 1.69892 1.15146 1.45033 1.23565 0.86858 0.81439 0.81643 0.79769 1.19920 1.21098 1.19138 1.20127 0.78530 0.87123 0.84643 1.90644 1.44425 1.17943 1.86806 1.22124 1.01486 0.95469 0.90606 1.62043 1.47617 1.12667 1.01133 1.22846 1.01288 0.96935 0.89605 1.22112 0.92309 0.88112 0.94312 0.91460 1.21738 1.02568 1.00261 0.95467 1.87924 1.56999 1.49764 1.35615 1.22628 1.02202 0.93264 0.82279 1.22517 0.88739 0.93963 1.01704 0.87209 1.22379 0.98178 1.01751 1.01758 0.93234 0.92163 0.91974 0.89657 0.91610 0.95385 0.94701 0.92586 0.88326 0.92063 0.93722 0.89837 0.90986 0.91663 0.92052 0.92011 0.88651 0.92003 0.92720 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.18 37.16 0.38 -1.71 16 2 C 0.11 1.62 5.85 -4.05 -0.02 1.60 16 3 N -0.60 -12.03 2.46 -175.06 -0.43 -12.46 16 4 C 0.22 5.31 4.23 -5.19 -0.02 5.29 16 5 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 6 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 9 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 13 C 0.51 10.27 7.25 -10.98 -0.08 10.19 16 14 O -0.52 -12.72 14.24 5.56 0.08 -12.64 16 15 C 0.03 0.51 3.71 -4.98 -0.02 0.49 16 16 N -0.51 -7.57 4.37 -227.78 -1.00 -8.56 16 17 C 0.02 0.25 4.53 -3.71 -0.02 0.23 16 18 C 0.09 1.02 3.43 -26.68 -0.09 0.93 16 19 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 20 C -0.14 -1.21 9.57 37.16 0.36 -0.86 16 21 O -0.38 -4.93 9.92 -35.23 -0.35 -5.28 16 22 C 0.07 0.95 6.41 37.21 0.24 1.18 16 23 C 0.04 0.56 2.64 -67.60 -0.18 0.38 16 24 H 0.11 1.88 6.09 -51.93 -0.32 1.56 16 25 C -0.18 -2.17 8.41 37.15 0.31 -1.86 16 26 H 0.05 0.58 7.12 -51.93 -0.37 0.21 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.07 0.84 6.61 -51.93 -0.34 0.50 16 31 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 32 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.10 1.36 7.61 -51.93 -0.39 0.96 16 35 H 0.06 0.79 4.79 -51.93 -0.25 0.54 16 36 H 0.04 0.49 6.39 -51.93 -0.33 0.16 16 37 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.72 6.06 -51.93 -0.31 0.40 16 44 H 0.05 0.66 6.33 -51.93 -0.33 0.33 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -33.91 345.58 -7.58 -41.49 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.61 Total: -0.03 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 0.41 Total: 2.36 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.65 Total: -48.07 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.27 Total: -17.92 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.91 -7.58 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079955485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.128 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds