Wall clock time and date at job start Tue Mar 31 2020 03:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99968 * 2 1 4 4 C 1.46899 * 111.00295 * 123.95666 * 2 1 3 5 5 C 1.53005 * 109.47302 * 66.04357 * 4 2 1 6 6 C 1.52996 * 109.47182 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47129 * 180.02562 * 6 5 4 8 8 C 1.46498 * 120.00211 * 90.00052 * 7 6 5 9 9 C 1.50692 * 109.46993 * 91.04947 * 8 7 6 10 10 H 1.07997 * 120.00513 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99837 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99874 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00105 * 0.02562 * 11 9 8 14 14 H 1.48509 * 109.46949 * 89.99897 * 13 11 9 15 15 H 1.48499 * 109.47107 * 209.99999 * 13 11 9 16 16 H 1.48499 * 109.46974 * 330.00336 * 13 11 9 17 17 C 1.34778 * 120.00039 * 270.00080 * 7 6 5 18 18 O 1.21284 * 119.99988 * 5.08021 * 17 7 6 19 19 C 1.50699 * 120.00142 * 185.07788 * 17 7 6 20 20 H 1.08992 * 110.45519 * 24.25642 * 19 17 7 21 21 C 1.54513 * 110.51083 * 146.86318 * 19 17 7 22 22 C 1.54476 * 104.06187 * 118.64599 * 21 19 17 23 23 O 1.44422 * 104.80530 * 23.97767 * 22 21 19 24 24 C 1.44650 * 105.36816 * 319.56507 * 23 22 21 25 25 H 1.08993 * 109.47331 * 60.00100 * 1 2 3 26 26 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47240 * 299.99700 * 1 2 3 28 28 H 1.08996 * 109.47290 * 63.95887 * 3 2 1 29 29 H 1.08999 * 109.46896 * 183.95688 * 3 2 1 30 30 H 1.08997 * 109.46937 * 303.95538 * 3 2 1 31 31 H 1.08999 * 109.47538 * 186.04372 * 4 2 1 32 32 H 1.09002 * 109.47081 * 306.05029 * 4 2 1 33 33 H 1.08999 * 109.46837 * 300.00445 * 5 4 2 34 34 H 1.08999 * 109.47203 * 60.00146 * 5 4 2 35 35 H 1.08999 * 109.47506 * 299.99923 * 6 5 4 36 36 H 1.09007 * 109.46962 * 60.00246 * 6 5 4 37 37 H 1.09003 * 109.47168 * 211.05366 * 8 7 6 38 38 H 1.09006 * 109.46721 * 331.05413 * 8 7 6 39 39 H 0.96998 * 120.00068 * 180.02562 * 12 11 9 40 40 H 1.08998 * 110.50525 * 237.28845 * 21 19 17 41 41 H 1.08997 * 110.50714 * 359.86446 * 21 19 17 42 42 H 1.08999 * 110.37122 * 142.80956 * 22 21 19 43 43 H 1.09002 * 110.37145 * 265.14926 * 22 21 19 44 44 H 1.09002 * 110.33743 * 281.58863 * 24 23 22 45 45 H 1.09003 * 110.50529 * 159.18315 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9703 6 6 2.1793 -3.0404 2.1553 7 7 1.8313 -4.4544 1.9949 8 6 2.7402 -5.3562 1.2830 9 6 3.6941 -5.9860 2.2649 10 1 3.6296 -5.7395 3.3144 11 6 4.6493 -6.8770 1.8235 12 7 5.4815 -7.4270 2.6806 13 14 4.7614 -7.3028 0.0082 14 1 5.6884 -6.3582 -0.6655 15 1 5.2705 -8.6895 -0.1445 16 1 3.4146 -7.1992 -0.6086 17 6 0.6750 -4.9256 2.5023 18 8 -0.1196 -4.1631 3.0102 19 6 0.3695 -6.3999 2.4384 20 1 1.2912 -6.9772 2.3670 21 6 -0.4490 -6.8372 3.6738 22 6 -1.7761 -7.3585 3.0794 23 8 -1.4495 -7.7397 1.7253 24 6 -0.5570 -6.7092 1.2416 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.7045 1.8723 0.9233 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 3.0798 -0.6612 1.1755 32 1 1.5611 -0.3874 2.0628 33 1 0.5473 -2.3475 0.9322 34 1 2.0658 -2.6214 0.0451 35 1 3.2636 -2.9356 2.1938 36 1 1.7446 -2.6615 3.0804 37 1 2.1629 -6.1360 0.7860 38 1 3.3037 -4.7919 0.5399 39 1 6.1538 -8.0535 2.3700 40 1 0.0670 -7.6324 4.2117 41 1 -0.6305 -5.9875 4.3319 42 1 -2.1303 -8.2224 3.6419 43 1 -2.5283 -6.5696 3.0806 44 1 -1.1219 -5.8208 0.9593 45 1 0.0251 -7.0745 0.3956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130781464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:41 Heat of formation + Delta-G solvation = -99.887419 kcal Electronic energy + Delta-G solvation = -23657.147259 eV Core-core repulsion = 20287.837127 eV Total energy + Delta-G solvation = -3369.310132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49154 -39.56637 -38.58841 -36.95200 -34.78317 -33.65920 -32.61436 -30.27456 -29.84952 -28.50725 -27.29328 -24.85544 -24.29304 -23.79804 -22.45391 -21.75400 -19.81128 -19.05716 -18.53962 -17.61604 -16.97219 -16.71636 -16.55105 -16.21073 -16.04276 -15.95262 -15.60764 -15.27470 -14.95951 -14.74712 -14.31535 -13.93837 -13.81318 -13.50312 -13.29894 -13.11245 -13.00411 -12.92991 -12.63482 -12.50788 -12.47267 -12.43963 -12.24761 -12.15719 -11.94610 -11.77269 -11.68389 -11.50821 -10.85917 -10.81980 -10.69714 -9.49230 -9.34313 -8.30104 -6.37897 1.41156 1.42913 1.51540 1.57627 2.16000 2.34596 2.94072 3.02542 3.04533 3.53473 3.66536 3.89587 3.94389 4.08174 4.12822 4.19993 4.26311 4.32297 4.38727 4.42908 4.49169 4.60371 4.61065 4.64158 4.70671 4.74460 4.77547 4.78343 4.84208 4.90212 4.96773 4.98686 5.00682 5.04121 5.13324 5.25669 5.43670 5.65422 5.71687 6.02802 6.09706 6.16337 6.55266 6.68600 7.19008 7.30588 8.85889 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.006167 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.249834 B = 4539.554224 C = 6392.570492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.561 5.561 3 C 0.024 3.976 4 C 0.064 3.936 5 C -0.114 4.114 6 C 0.120 3.880 7 N -0.592 5.592 8 C 0.216 3.784 9 C -0.540 4.540 10 H 0.031 0.969 11 C 0.023 3.977 12 N -0.940 5.940 13 Si 0.935 3.065 14 H -0.265 1.265 15 H -0.286 1.286 16 H -0.235 1.235 17 C 0.526 3.474 18 O -0.584 6.584 19 C -0.152 4.152 20 H 0.105 0.895 21 C -0.138 4.138 22 C 0.051 3.949 23 O -0.386 6.386 24 C 0.070 3.930 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.268 0.732 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.157 9.459 -5.875 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.285 5.285 3 C -0.123 4.123 4 C -0.065 4.065 5 C -0.153 4.153 6 C -0.004 4.004 7 N -0.320 5.320 8 C 0.095 3.905 9 C -0.579 4.579 10 H 0.050 0.950 11 C -0.177 4.177 12 N -0.580 5.580 13 Si 0.758 3.242 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.158 1.158 17 C 0.315 3.685 18 O -0.466 6.466 19 C -0.174 4.174 20 H 0.123 0.877 21 C -0.176 4.176 22 C -0.025 4.025 23 O -0.305 6.305 24 C -0.007 4.007 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.135 0.865 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.314 9.336 -6.155 15.213 hybrid contribution 0.609 0.157 0.726 0.960 sum -9.705 9.493 -5.429 14.621 Atomic orbital electron populations 1.22440 0.87056 1.02030 1.01070 1.61976 1.08604 1.14886 1.43085 1.22430 1.01159 0.87730 1.01031 1.21977 1.00636 0.92498 0.91392 1.21772 1.00750 0.94512 0.98232 1.21362 1.00513 0.79969 0.98533 1.47965 1.19409 1.09992 1.54676 1.19682 0.88983 0.89735 0.92145 1.21476 1.15921 1.25871 0.94592 0.95046 1.25748 0.94380 0.95053 1.02501 1.70043 1.20193 1.30660 1.37058 0.85894 0.80730 0.77924 0.79670 1.18947 1.21148 1.15789 1.20460 0.80833 0.90424 0.76774 1.90567 1.48562 1.59744 1.47771 1.22785 1.02392 0.93478 0.98741 0.87684 1.22870 0.96160 1.01897 0.96640 1.23541 0.95559 1.01181 0.82238 1.89097 1.65754 1.46558 1.29043 1.23298 0.90260 0.91695 0.95482 0.90056 0.92113 0.95633 0.95441 0.90839 0.90204 0.89848 0.94878 0.92673 0.91276 0.90252 0.91802 0.93507 0.93499 0.92260 0.89867 0.90356 0.86485 0.91455 0.91786 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.40 127.69 1.20 1.67 16 2 N -0.56 -12.85 5.02 -948.87 -4.76 -17.61 16 3 C 0.02 0.43 9.57 127.69 1.22 1.65 16 4 C 0.06 1.57 4.96 86.31 0.43 2.00 16 5 C -0.11 -3.33 5.47 30.59 0.17 -3.16 16 6 C 0.12 4.14 5.36 86.38 0.46 4.61 16 7 N -0.59 -23.33 2.46 -826.15 -2.03 -25.36 16 8 C 0.22 9.06 3.82 85.63 0.33 9.38 16 9 C -0.54 -28.06 9.16 25.60 0.23 -27.83 16 10 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 11 C 0.02 1.20 5.47 84.66 0.46 1.66 16 12 N -0.94 -55.00 13.96 21.45 0.30 -54.70 16 13 Si 0.94 39.23 27.47 68.60 1.88 41.12 16 14 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 15 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.23 -8.74 6.54 99.48 0.65 -8.09 16 17 C 0.53 20.87 6.58 87.66 0.58 21.44 16 18 O -0.58 -24.80 15.52 -3.04 -0.05 -24.85 16 19 C -0.15 -5.50 2.58 -10.52 -0.03 -5.52 16 20 H 0.10 4.25 6.02 -2.39 -0.01 4.24 16 21 C -0.14 -4.38 6.59 31.61 0.21 -4.17 16 22 C 0.05 1.37 7.64 72.48 0.55 1.92 16 23 O -0.39 -12.02 11.65 -148.98 -1.74 -13.76 16 24 C 0.07 2.19 7.07 72.48 0.51 2.70 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.42 6.30 -2.39 -0.02 1.40 16 27 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.94 8.06 -2.39 -0.02 1.92 16 32 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 33 H 0.05 1.73 6.47 -2.39 -0.02 1.71 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.08 2.74 8.07 -2.39 -0.02 2.72 16 36 H 0.06 2.30 7.50 -2.38 -0.02 2.28 16 37 H 0.05 1.86 5.58 -2.39 -0.01 1.85 16 38 H 0.05 1.86 7.49 -2.38 -0.02 1.84 16 39 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 40 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.08 2.63 7.01 -2.39 -0.02 2.61 16 42 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.06 1.95 7.86 -2.39 -0.02 1.93 16 45 H 0.11 3.09 8.03 -2.39 -0.02 3.08 16 Total: -1.00 -63.53 356.63 0.83 -62.71 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.89 Total: 26.10 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.33 Total: 6.35 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -6.49 Total: -97.67 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -1.78 Total: -38.61 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.88 Total: 41.12 kcal Total: -63.53 0.83 -62.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130781464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.181 kcal (2) G-P(sol) polarization free energy of solvation -63.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds