Wall clock time and date at job start Tue Mar 31 2020 03:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34671 * 117.00195 * 2 1 4 4 O 1.21415 * 119.99428 * 0.02562 * 3 2 1 5 5 C 1.48150 * 120.00406 * 180.27490 * 3 2 1 6 6 C 1.39787 * 119.85615 * 359.72985 * 5 3 2 7 7 C 1.36458 * 120.30638 * 179.97438 * 6 5 3 8 8 N 1.48017 * 120.00305 * 179.97438 * 7 6 5 9 9 O 1.31700 * 120.00050 * 353.76571 * 8 7 6 10 10 O 1.31702 * 120.00150 * 173.77003 * 8 7 6 11 11 C 1.41095 * 120.00092 * 359.97438 * 7 6 5 12 12 C 1.40822 * 120.14626 * 180.02562 * 11 7 6 13 13 H 1.08002 * 119.99779 * 324.06981 * 12 11 7 14 14 C 1.46419 * 119.99837 * 144.06000 * 12 11 7 15 15 N 1.29571 * 119.99858 * 170.80423 * 14 12 11 16 16 Si 1.86798 * 120.00421 * 350.81120 * 14 12 11 17 17 H 1.48496 * 109.47123 * 88.47050 * 16 14 12 18 18 H 1.48495 * 109.47141 * 208.47373 * 16 14 12 19 19 H 1.48500 * 109.46766 * 328.47479 * 16 14 12 20 20 C 1.41008 * 119.71117 * 0.02562 * 11 7 6 21 21 C 1.37757 * 119.70239 * 359.74446 * 20 11 7 22 22 Cl 1.73601 * 120.00578 * 180.24907 * 21 20 11 23 23 H 1.08998 * 109.47376 * 59.99956 * 1 2 3 24 24 H 1.09005 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47083 * 299.99636 * 1 2 3 26 26 H 1.08009 * 119.84937 * 359.94730 * 6 5 3 27 27 H 0.97001 * 120.00600 * 179.97438 * 15 14 12 28 28 H 1.08004 * 120.15156 * 180.02562 * 20 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4020 2.2181 0.0005 5 6 3.5428 1.2775 -0.0062 6 6 4.3013 0.1033 -0.0062 7 6 5.6645 0.1640 -0.0124 8 7 6.4610 -1.0835 -0.0119 9 8 5.8603 -2.2483 0.1184 10 8 7.7705 -1.0289 -0.1416 11 6 6.3149 1.4161 -0.0193 12 6 7.7215 1.4824 -0.0262 13 1 8.2991 0.7529 0.5221 14 6 8.4008 2.5401 -0.7769 15 7 9.6781 2.7119 -0.6426 16 14 7.4263 3.6420 -1.9282 17 1 6.9061 4.8100 -1.1730 18 1 8.3082 4.1148 -3.0253 19 1 6.2898 2.8771 -2.5013 20 6 5.5502 2.6009 -0.0192 21 6 4.1747 2.5255 -0.0177 22 17 3.2255 3.9790 -0.0242 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.8061 -0.8566 -0.0010 27 1 10.1283 3.4124 -1.1402 28 1 6.0406 3.5631 -0.0249 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000199820832.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:31 Heat of formation + Delta-G solvation = -65.085725 kcal Electronic energy + Delta-G solvation = -20003.134986 eV Core-core repulsion = 16434.992093 eV Total energy + Delta-G solvation = -3568.142893 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 285.028 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53656 -40.42616 -38.70275 -37.51646 -37.19519 -36.27706 -34.88386 -33.37222 -32.30141 -29.40120 -27.95059 -26.70890 -24.37045 -23.47692 -21.88741 -20.37256 -19.49195 -18.75760 -18.04189 -17.76644 -17.41687 -17.28806 -16.52301 -16.20407 -16.13180 -15.51896 -14.94654 -14.75490 -14.34001 -14.07957 -13.70522 -13.36520 -13.16907 -13.04522 -12.88771 -12.47257 -12.41111 -12.07462 -11.80199 -11.70949 -11.63262 -11.39569 -11.26559 -10.93733 -10.32148 -10.15469 -9.57435 -7.30382 -1.31177 -0.29198 0.42363 0.77863 1.06261 1.09803 1.15421 1.36384 1.46868 1.78778 1.88974 2.11026 2.65134 3.53983 3.68491 3.94190 4.09603 4.24809 4.36962 4.40278 4.47387 4.58537 4.67148 4.77947 4.95835 5.14539 5.27725 5.36605 5.44091 5.80849 5.90094 6.38648 6.80156 7.33518 Molecular weight = 285.03amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.008024 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.333596 B = 3488.542516 C = 5035.917831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.519 3.481 4 O -0.517 6.517 5 C -0.233 4.233 6 C 0.071 3.929 7 C -0.107 4.107 8 N 0.033 4.967 9 O -0.347 6.347 10 O -0.295 6.295 11 C 0.040 3.960 12 C -0.258 4.258 13 H 0.113 0.887 14 C 0.033 3.967 15 N -0.702 5.702 16 Si 0.949 3.051 17 H -0.218 1.218 18 H -0.244 1.244 19 H -0.248 1.248 20 C -0.175 4.175 21 C 0.053 3.947 22 Cl -0.036 7.036 23 H 0.064 0.936 24 H 0.130 0.870 25 H 0.064 0.936 26 H 0.156 0.844 27 H 0.334 0.666 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 6.554 -1.890 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.284 6.284 3 C 0.366 3.634 4 O -0.408 6.408 5 C -0.239 4.239 6 C 0.051 3.949 7 C -0.209 4.209 8 N 0.451 4.549 9 O -0.493 6.493 10 O -0.452 6.452 11 C 0.035 3.965 12 C -0.284 4.284 13 H 0.130 0.870 14 C -0.201 4.201 15 N -0.321 5.321 16 Si 0.765 3.235 17 H -0.141 1.141 18 H -0.168 1.168 19 H -0.172 1.172 20 C -0.195 4.195 21 C 0.025 3.975 22 Cl -0.007 7.007 23 H 0.083 0.917 24 H 0.148 0.852 25 H 0.083 0.917 26 H 0.173 0.827 27 H 0.149 0.851 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.922 7.137 -1.883 11.580 hybrid contribution 0.209 -0.268 -0.134 0.366 sum -8.713 6.869 -2.018 11.277 Atomic orbital electron populations 1.23549 0.74190 1.05610 1.02726 1.86532 1.25396 1.32033 1.84391 1.20733 0.88094 0.81751 0.72792 1.90824 1.66613 1.35796 1.47524 1.18061 0.89703 0.91424 1.24674 1.20576 0.90312 0.99340 0.84676 1.19938 0.90345 0.81705 1.28903 1.49952 1.02471 1.03453 0.99051 1.96080 1.73120 1.14699 1.65412 1.96111 0.91438 1.95745 1.61936 1.17122 0.93610 0.89050 0.96763 1.22600 0.90978 1.04485 1.10345 0.86961 1.28770 0.96278 0.96712 0.98376 1.68859 1.11480 1.23624 1.28125 0.85726 0.79942 0.79265 0.78556 1.14141 1.16750 1.17157 1.21136 0.90682 0.97934 1.09712 1.20692 0.91337 0.87112 0.98313 1.98361 1.72014 1.34237 1.96087 0.91694 0.85163 0.91680 0.82661 0.85070 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 15 2 O -0.37 -11.21 9.79 -55.80 -0.55 -11.76 15 3 C 0.52 18.28 7.90 70.46 0.56 18.83 15 4 O -0.52 -18.87 13.72 20.11 0.28 -18.60 15 5 C -0.23 -8.88 5.90 -19.87 -0.12 -8.99 15 6 C 0.07 2.88 9.08 22.23 0.20 3.08 15 7 C -0.11 -4.95 6.89 36.66 0.25 -4.70 15 8 N 0.03 1.72 4.98 -45.78 -0.23 1.49 15 9 O -0.35 -18.43 19.14 3.51 0.07 -18.36 15 10 O -0.29 -16.31 16.23 3.51 0.06 -16.26 15 11 C 0.04 1.76 5.11 -21.27 -0.11 1.66 15 12 C -0.26 -11.68 8.39 25.03 0.21 -11.47 15 13 H 0.11 5.75 6.04 -2.91 -0.02 5.73 15 14 C 0.03 1.29 5.65 87.16 0.49 1.78 15 15 N -0.70 -27.02 13.89 23.19 0.32 -26.70 15 16 Si 0.95 29.56 24.64 68.60 1.69 31.25 15 17 H -0.22 -5.91 6.65 99.48 0.66 -5.24 15 18 H -0.24 -6.73 7.11 99.48 0.71 -6.02 15 19 H -0.25 -8.54 6.90 99.48 0.69 -7.85 15 20 C -0.17 -6.65 6.98 22.84 0.16 -6.49 15 21 C 0.05 1.99 6.34 22.55 0.14 2.14 15 22 Cl -0.04 -1.22 25.98 -2.72 -0.07 -1.29 15 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 15 24 H 0.13 1.86 8.14 -2.38 -0.02 1.84 15 25 H 0.06 1.31 8.14 -2.39 -0.02 1.30 15 26 H 0.16 6.01 7.08 -2.91 -0.02 5.99 15 27 H 0.33 10.53 8.27 -92.71 -0.77 9.76 15 28 H 0.16 5.20 4.86 -2.91 -0.01 5.19 15 Total: -1.00 -56.27 272.47 5.73 -50.54 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.18 Total: 11.98 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 2.99 Total: -2.29 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.09 Total: -25.21 kcal Atomic # 8 Polarization: -64.82 SS G_CDS: -0.15 Total: -64.97 kcal Atomic # 14 Polarization: 29.56 SS G_CDS: 1.69 Total: 31.25 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.07 Total: -1.29 kcal Total: -56.27 5.73 -50.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199820832.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.545 kcal (2) G-P(sol) polarization free energy of solvation -56.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds