Wall clock time and date at job start Tue Mar 31 2020 03:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47220 * 2 1 4 4 C 1.46506 * 119.99319 * 90.00407 * 3 2 1 5 5 C 1.50700 * 109.47155 * 89.99961 * 4 3 2 6 6 H 1.08003 * 120.00182 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00068 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99895 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00221 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47263 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46974 * 59.99873 * 9 7 5 12 12 H 1.48497 * 109.46930 * 299.99977 * 9 7 5 13 13 C 1.34767 * 120.00706 * 269.99858 * 3 2 1 14 14 O 1.21276 * 120.00611 * 179.97438 * 13 3 2 15 15 C 1.50709 * 119.99831 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.46884 * 173.74421 * 15 13 3 17 17 C 1.46852 * 110.99640 * 169.40310 * 16 15 13 18 18 C 1.53035 * 109.52268 * 185.83911 * 17 16 15 19 19 C 1.53110 * 109.28021 * 300.81899 * 18 17 16 20 20 H 1.09003 * 109.52062 * 297.75053 * 19 18 17 21 21 O 1.42897 * 109.57942 * 177.58928 * 19 18 17 22 22 C 1.53126 * 109.16378 * 57.65382 * 19 18 17 23 23 H 1.08997 * 109.49939 * 62.28502 * 22 19 18 24 24 C 1.52990 * 109.50476 * 182.40742 * 22 19 18 25 25 C 1.46848 * 111.00339 * 293.60611 * 16 15 13 26 26 H 1.09001 * 109.47371 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46759 * 299.99788 * 1 2 3 28 28 H 1.09002 * 109.47055 * 59.99246 * 1 2 3 29 29 H 1.09003 * 109.46759 * 240.00212 * 2 1 3 30 30 H 1.09002 * 109.47055 * 120.00754 * 2 1 3 31 31 H 1.09000 * 109.47418 * 329.99636 * 4 3 2 32 32 H 1.08998 * 109.46640 * 209.99621 * 4 3 2 33 33 H 0.97000 * 119.99898 * 359.97438 * 8 7 5 34 34 H 1.08997 * 109.46799 * 293.74571 * 15 13 3 35 35 H 1.09003 * 109.46867 * 53.74332 * 15 13 3 36 36 H 1.09006 * 109.45885 * 305.85487 * 17 16 15 37 37 H 1.08998 * 109.46528 * 65.82150 * 17 16 15 38 38 H 1.08996 * 109.50176 * 180.87508 * 18 17 16 39 39 H 1.09005 * 109.50074 * 60.76020 * 18 17 16 40 40 H 0.96707 * 113.99668 * 60.28298 * 21 19 18 41 41 H 1.09005 * 109.46888 * 179.80344 * 24 22 19 42 42 H 1.08999 * 109.47054 * 299.80148 * 24 22 19 43 43 H 1.08997 * 109.47701 * 59.80475 * 24 22 19 44 44 H 1.08999 * 109.46610 * 294.18459 * 25 16 15 45 45 H 1.09004 * 109.45757 * 54.15901 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2689 5 6 3.6859 1.8348 1.7038 6 1 4.3427 1.2300 1.0962 7 6 4.1495 2.3901 2.8776 8 7 3.3495 3.1261 3.6178 9 14 5.9136 2.0959 3.4172 10 1 6.1611 2.7958 4.7032 11 1 6.8414 2.6182 2.3821 12 1 6.1402 0.6392 3.5954 13 6 2.2431 2.0166 -1.1670 14 8 2.6469 3.1602 -1.1670 15 6 1.9914 1.3065 -2.4723 16 7 2.1651 2.2502 -3.5845 17 6 2.1765 1.5474 -4.8739 18 6 2.5036 2.5382 -5.9935 19 6 1.4521 3.6511 -6.0069 20 1 0.4720 3.2236 -6.2187 21 8 1.7826 4.6100 -7.0135 22 6 1.4268 4.3352 -4.6372 23 1 2.3953 4.7959 -4.4427 24 6 0.3371 5.4090 -4.6227 25 6 1.1309 3.2923 -3.5570 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 1.5818 1.6875 2.0285 32 1 2.0957 3.1409 1.1386 33 1 2.4334 3.2785 3.3378 34 1 2.6979 0.4835 -2.5802 35 1 0.9739 0.9156 -2.4829 36 1 2.9315 0.7614 -4.8525 37 1 1.1970 1.1051 -5.0552 38 1 2.4967 2.0194 -6.9520 39 1 3.4891 2.9707 -5.8202 40 1 1.8166 4.2449 -7.9084 41 1 0.3173 5.8932 -3.6463 42 1 0.5484 6.1515 -5.3922 43 1 -0.6306 4.9475 -4.8190 44 1 0.1562 2.8418 -3.7444 45 1 1.1265 3.7738 -2.5791 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249575698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:16 Heat of formation + Delta-G solvation = -91.153101 kcal Electronic energy + Delta-G solvation = -23771.873522 eV Core-core repulsion = 20402.942139 eV Total energy + Delta-G solvation = -3368.931383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93710 -38.71118 -36.38653 -35.27068 -33.40443 -32.99246 -31.61098 -30.07842 -28.05706 -26.56157 -25.73783 -23.39898 -23.07416 -22.39549 -21.58657 -19.87084 -18.51263 -17.49500 -16.89402 -16.42114 -16.00889 -15.38722 -15.15152 -14.82665 -14.58750 -13.87300 -13.66584 -13.59603 -13.54853 -13.30562 -13.01310 -12.79279 -12.47739 -12.35901 -12.10909 -11.91934 -11.66103 -11.58328 -11.35385 -11.29016 -11.11566 -10.95879 -10.78004 -10.68534 -10.50872 -10.24355 -10.07604 -9.96226 -9.10838 -8.94716 -8.35902 -8.20764 -7.60154 -6.35780 -4.07490 3.38556 3.45021 3.49824 3.54576 3.67055 4.04605 4.11850 4.56363 4.60486 4.64062 4.92131 4.95163 5.08629 5.19273 5.21959 5.26628 5.37264 5.39589 5.41817 5.47193 5.52265 5.54690 5.62370 5.68950 5.70377 5.79702 5.90658 5.94314 6.04633 6.13002 6.18266 6.23758 6.37264 6.38688 6.79232 7.01347 7.11039 7.17475 7.44713 7.48842 8.07057 8.33022 8.46405 8.80854 9.07988 9.62138 11.01489 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020254 B = 0.004113 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.112010 B = 6805.322954 C = 7222.381644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.597 5.597 4 C 0.239 3.761 5 C -0.605 4.605 6 H 0.051 0.949 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 1.071 2.929 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.288 1.288 13 C 0.506 3.494 14 O -0.521 6.521 15 C 0.039 3.961 16 N -0.520 5.520 17 C 0.059 3.941 18 C -0.148 4.148 19 C 0.109 3.891 20 H 0.049 0.951 21 O -0.563 6.563 22 C -0.078 4.078 23 H 0.089 0.911 24 C -0.141 4.141 25 C 0.062 3.938 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.020 0.980 32 H 0.032 0.968 33 H 0.267 0.733 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.031 0.969 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.373 0.627 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.026 0.974 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 -5.974 -18.841 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.329 5.329 4 C 0.119 3.881 5 C -0.644 4.644 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.546 5.546 9 Si 0.899 3.101 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.215 1.215 13 C 0.291 3.709 14 O -0.396 6.396 15 C -0.092 4.092 16 N -0.245 5.245 17 C -0.069 4.069 18 C -0.186 4.186 19 C 0.050 3.950 20 H 0.067 0.933 21 O -0.368 6.368 22 C -0.097 4.097 23 H 0.107 0.893 24 C -0.199 4.199 25 C -0.066 4.066 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.219 0.781 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.044 0.956 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.863 -4.386 -17.034 18.541 hybrid contribution -1.898 -1.456 -1.784 2.984 sum -7.761 -5.842 -18.818 21.177 Atomic orbital electron populations 1.22227 0.96887 1.01445 1.02143 1.21392 0.93355 0.84242 1.02692 1.48074 1.64315 1.13235 1.07325 1.19286 0.96814 0.93025 0.78995 1.22253 0.96976 1.35622 1.09505 0.93097 1.25799 1.05828 0.93471 0.93347 1.70807 1.07846 1.36357 1.39622 0.83514 0.74311 0.75997 0.76279 1.20694 1.21379 1.21504 1.20146 0.78854 0.87185 0.84670 1.90662 1.44373 1.17823 1.86763 1.22050 1.01066 0.95332 0.90768 1.61502 1.49020 1.12775 1.01180 1.22028 1.00032 0.95969 0.88837 1.22302 1.01434 0.97022 0.97830 1.21925 0.95753 0.88518 0.88823 0.93337 1.86552 1.93486 1.38176 1.18606 1.21096 1.01340 0.95792 0.91499 0.89292 1.21715 0.97427 0.98544 1.02238 1.22243 0.90928 0.92476 1.00919 0.92064 0.92140 0.93245 0.91789 0.89953 0.96231 0.94986 0.92292 0.88378 0.92713 0.90367 0.95071 0.91429 0.89921 0.78082 0.92299 0.91789 0.93317 0.95610 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.18 37.16 0.38 -1.84 16 2 C 0.11 1.71 5.84 -4.04 -0.02 1.69 16 3 N -0.60 -12.59 2.46 -175.05 -0.43 -13.02 16 4 C 0.24 6.22 4.47 -5.19 -0.02 6.20 16 5 C -0.60 -17.49 9.39 -34.44 -0.32 -17.81 16 6 H 0.05 1.49 7.81 -52.48 -0.41 1.08 16 7 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 8 N -0.91 -28.01 13.65 55.43 0.76 -27.25 16 9 Si 1.07 25.92 29.90 -169.99 -5.08 20.84 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.51 10.57 7.20 -10.99 -0.08 10.49 16 14 O -0.52 -13.22 14.29 5.56 0.08 -13.14 16 15 C 0.04 0.59 3.92 -4.97 -0.02 0.57 16 16 N -0.52 -7.81 4.35 -236.10 -1.03 -8.83 16 17 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 18 C -0.15 -1.51 5.72 -26.66 -0.15 -1.66 16 19 C 0.11 1.19 2.94 -26.61 -0.08 1.11 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 21 O -0.56 -5.97 12.77 -35.23 -0.45 -6.42 16 22 C -0.08 -1.06 2.61 -90.54 -0.24 -1.30 16 23 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 24 C -0.14 -1.72 9.07 37.15 0.34 -1.38 16 25 C 0.06 0.91 4.40 -3.83 -0.02 0.90 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.62 7.12 -51.93 -0.37 0.25 16 29 H 0.06 0.84 6.61 -51.93 -0.34 0.50 16 30 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 32 H 0.03 0.94 7.29 -51.93 -0.38 0.56 16 33 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 34 H 0.10 1.34 7.55 -51.93 -0.39 0.95 16 35 H 0.05 0.72 6.83 -51.93 -0.35 0.36 16 36 H 0.08 0.80 8.01 -51.93 -0.42 0.39 16 37 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.37 2.24 9.09 45.56 0.41 2.65 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.77 7.76 -51.93 -0.40 0.36 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.10 1.78 6.05 -51.93 -0.31 1.46 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -34.96 354.17 -8.29 -43.25 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.12 Total: 1.15 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.36 Total: -1.91 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.70 Total: -49.11 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.37 Total: -19.56 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.96 -8.29 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249575698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.907 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds