Wall clock time and date at job start Tue Mar 31 2020 03:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47220 * 2 1 4 4 C 1.46506 * 119.99319 * 90.00407 * 3 2 1 5 5 C 1.50700 * 109.47155 * 89.99961 * 4 3 2 6 6 H 1.08003 * 120.00182 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00068 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99895 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00221 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47263 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46974 * 59.99873 * 9 7 5 12 12 H 1.48497 * 109.46930 * 299.99977 * 9 7 5 13 13 C 1.34767 * 120.00706 * 269.99858 * 3 2 1 14 14 O 1.21276 * 120.00611 * 179.97438 * 13 3 2 15 15 C 1.50709 * 119.99831 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.46884 * 173.74421 * 15 13 3 17 17 C 1.46852 * 110.99640 * 169.40310 * 16 15 13 18 18 C 1.53035 * 109.52268 * 185.83911 * 17 16 15 19 19 C 1.53110 * 109.28021 * 300.81899 * 18 17 16 20 20 H 1.09003 * 109.52062 * 297.75053 * 19 18 17 21 21 O 1.42897 * 109.57942 * 177.58928 * 19 18 17 22 22 C 1.53126 * 109.16378 * 57.65382 * 19 18 17 23 23 H 1.08997 * 109.49939 * 62.28502 * 22 19 18 24 24 C 1.52990 * 109.50476 * 182.40742 * 22 19 18 25 25 C 1.46848 * 111.00339 * 293.60611 * 16 15 13 26 26 H 1.09001 * 109.47371 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46759 * 299.99788 * 1 2 3 28 28 H 1.09002 * 109.47055 * 59.99246 * 1 2 3 29 29 H 1.09003 * 109.46759 * 240.00212 * 2 1 3 30 30 H 1.09002 * 109.47055 * 120.00754 * 2 1 3 31 31 H 1.09000 * 109.47418 * 329.99636 * 4 3 2 32 32 H 1.08998 * 109.46640 * 209.99621 * 4 3 2 33 33 H 0.97000 * 119.99898 * 359.97438 * 8 7 5 34 34 H 1.08997 * 109.46799 * 293.74571 * 15 13 3 35 35 H 1.09003 * 109.46867 * 53.74332 * 15 13 3 36 36 H 1.09006 * 109.45885 * 305.85487 * 17 16 15 37 37 H 1.08998 * 109.46528 * 65.82150 * 17 16 15 38 38 H 1.08996 * 109.50176 * 180.87508 * 18 17 16 39 39 H 1.09005 * 109.50074 * 60.76020 * 18 17 16 40 40 H 0.96707 * 113.99668 * 60.28298 * 21 19 18 41 41 H 1.09005 * 109.46888 * 179.80344 * 24 22 19 42 42 H 1.08999 * 109.47054 * 299.80148 * 24 22 19 43 43 H 1.08997 * 109.47701 * 59.80475 * 24 22 19 44 44 H 1.08999 * 109.46610 * 294.18459 * 25 16 15 45 45 H 1.09004 * 109.45757 * 54.15901 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2689 5 6 3.6859 1.8348 1.7038 6 1 4.3427 1.2300 1.0962 7 6 4.1495 2.3901 2.8776 8 7 3.3495 3.1261 3.6178 9 14 5.9136 2.0959 3.4172 10 1 6.1611 2.7958 4.7032 11 1 6.8414 2.6182 2.3821 12 1 6.1402 0.6392 3.5954 13 6 2.2431 2.0166 -1.1670 14 8 2.6469 3.1602 -1.1670 15 6 1.9914 1.3065 -2.4723 16 7 2.1651 2.2502 -3.5845 17 6 2.1765 1.5474 -4.8739 18 6 2.5036 2.5382 -5.9935 19 6 1.4521 3.6511 -6.0069 20 1 0.4720 3.2236 -6.2187 21 8 1.7826 4.6100 -7.0135 22 6 1.4268 4.3352 -4.6372 23 1 2.3953 4.7959 -4.4427 24 6 0.3371 5.4090 -4.6227 25 6 1.1309 3.2923 -3.5570 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 1.5818 1.6875 2.0285 32 1 2.0957 3.1409 1.1386 33 1 2.4334 3.2785 3.3378 34 1 2.6979 0.4835 -2.5802 35 1 0.9739 0.9156 -2.4829 36 1 2.9315 0.7614 -4.8525 37 1 1.1970 1.1051 -5.0552 38 1 2.4967 2.0194 -6.9520 39 1 3.4891 2.9707 -5.8202 40 1 1.8166 4.2449 -7.9084 41 1 0.3173 5.8932 -3.6463 42 1 0.5484 6.1515 -5.3922 43 1 -0.6306 4.9475 -4.8190 44 1 0.1562 2.8418 -3.7444 45 1 1.1265 3.7738 -2.5791 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249575698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:15 Heat of formation + Delta-G solvation = -118.233822 kcal Electronic energy + Delta-G solvation = -23773.047830 eV Core-core repulsion = 20402.942139 eV Total energy + Delta-G solvation = -3370.105691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.22260 -39.99869 -37.45120 -36.87049 -35.22386 -34.31851 -32.58533 -31.55368 -29.59075 -27.83818 -27.15433 -25.07191 -24.40113 -23.72085 -22.65767 -20.83013 -20.15049 -18.93110 -18.34100 -17.93377 -17.41497 -16.61004 -16.42705 -16.00341 -15.72212 -15.66170 -15.12957 -14.92605 -14.62920 -14.52275 -14.19672 -14.01845 -13.83239 -13.73763 -13.47823 -13.24935 -13.17762 -12.88060 -12.60236 -12.52855 -12.50102 -12.39315 -12.13979 -11.98329 -11.94969 -11.78054 -11.22376 -11.17629 -10.75828 -10.62392 -10.58522 -9.48367 -9.25632 -8.69519 -6.45525 1.48113 1.57759 1.76753 1.80308 2.15022 2.53270 2.88577 3.09464 3.27468 3.59231 3.69638 3.83943 4.01665 4.04457 4.09354 4.21178 4.26187 4.34842 4.37849 4.42320 4.50865 4.54245 4.60593 4.68872 4.73026 4.79288 4.85429 4.91022 4.91569 4.91948 4.95433 5.12053 5.16431 5.24593 5.29273 5.37040 5.59802 5.82684 5.91585 6.12530 6.16349 6.44394 6.73500 6.94576 7.30510 7.47099 8.64748 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020254 B = 0.004113 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.112010 B = 6805.322954 C = 7222.381644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.603 5.603 4 C 0.252 3.748 5 C -0.616 4.616 6 H 0.045 0.955 7 C -0.032 4.032 8 N -0.932 5.932 9 Si 1.119 2.881 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.259 1.259 13 C 0.494 3.506 14 O -0.580 6.580 15 C 0.055 3.945 16 N -0.550 5.550 17 C 0.059 3.941 18 C -0.143 4.143 19 C 0.116 3.884 20 H 0.071 0.929 21 O -0.580 6.580 22 C -0.081 4.081 23 H 0.049 0.951 24 C -0.136 4.136 25 C 0.069 3.931 26 H 0.098 0.902 27 H 0.035 0.965 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.015 0.985 32 H -0.012 1.012 33 H 0.254 0.746 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.104 0.896 39 H 0.056 0.944 40 H 0.394 0.606 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.095 -8.981 -21.421 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.654 4.654 6 H 0.063 0.937 7 C -0.230 4.230 8 N -0.569 5.569 9 Si 0.939 3.061 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.184 1.184 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.076 4.076 16 N -0.275 5.275 17 C -0.068 4.068 18 C -0.181 4.181 19 C 0.057 3.943 20 H 0.089 0.911 21 O -0.389 6.389 22 C -0.100 4.100 23 H 0.068 0.932 24 C -0.194 4.194 25 C -0.059 4.059 26 H 0.117 0.883 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.006 0.994 33 H 0.063 0.937 34 H 0.140 0.860 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.075 0.925 40 H 0.244 0.756 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.342 -7.455 -19.663 21.964 hybrid contribution -1.790 -0.485 -1.026 2.120 sum -8.132 -7.940 -20.689 23.605 Atomic orbital electron populations 1.22152 0.94488 1.03636 1.01484 1.21750 0.95304 0.81203 1.03970 1.48152 1.64442 1.15186 1.05744 1.18758 0.95596 0.91128 0.81576 1.22556 0.98134 1.35237 1.09489 0.93677 1.27372 1.09413 0.92572 0.93669 1.70928 1.07634 1.37935 1.40403 0.82926 0.69495 0.77656 0.75994 1.20419 1.20772 1.18404 1.21322 0.77301 0.86751 0.86369 1.90636 1.46927 1.20636 1.87758 1.21960 1.03432 0.94855 0.87327 1.61420 1.49667 1.13519 1.02894 1.22164 1.01886 0.96089 0.86677 1.22294 0.99662 0.96810 0.99356 1.21796 0.97129 0.88214 0.87170 0.91099 1.86506 1.93567 1.38777 1.20020 1.21053 0.99567 0.95908 0.93488 0.93248 1.21669 0.98069 0.98341 1.01340 1.22043 0.92119 0.92781 0.98910 0.88322 0.94529 0.92229 0.87918 0.91227 0.96672 0.99447 0.93676 0.85976 0.89475 0.89051 0.92492 0.87768 0.92548 0.75578 0.93939 0.91728 0.91332 0.93363 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 10.18 71.98 0.73 -3.07 16 2 C 0.10 3.00 5.84 86.38 0.50 3.50 16 3 N -0.60 -25.84 2.46 -826.15 -2.03 -27.87 16 4 C 0.25 13.82 4.47 85.63 0.38 14.20 16 5 C -0.62 -36.69 9.39 25.60 0.24 -36.45 16 6 H 0.04 2.68 7.81 -2.91 -0.02 2.66 16 7 C -0.03 -1.93 5.46 84.65 0.46 -1.47 16 8 N -0.93 -59.34 13.65 21.45 0.29 -59.05 16 9 Si 1.12 52.39 29.90 68.60 2.05 54.45 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 C 0.49 20.98 7.20 87.66 0.63 21.62 16 14 O -0.58 -31.28 14.29 -3.02 -0.04 -31.33 16 15 C 0.05 1.54 3.92 85.56 0.33 1.88 16 16 N -0.55 -15.69 4.35 -900.90 -3.92 -19.60 16 17 C 0.06 1.09 5.46 86.32 0.47 1.56 16 18 C -0.14 -2.50 5.72 30.64 0.18 -2.33 16 19 C 0.12 2.25 2.94 30.67 0.09 2.34 16 20 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 21 O -0.58 -11.08 12.77 -148.98 -1.90 -12.99 16 22 C -0.08 -2.20 2.61 -10.74 -0.03 -2.23 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 C -0.14 -3.34 9.07 71.98 0.65 -2.68 16 25 C 0.07 2.03 4.40 86.33 0.38 2.41 16 26 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.30 7.12 -2.39 -0.02 1.29 16 29 H 0.10 2.30 6.61 -2.39 -0.02 2.28 16 30 H 0.07 2.26 8.07 -2.39 -0.02 2.25 16 31 H 0.02 0.84 7.94 -2.39 -0.02 0.82 16 32 H -0.01 -0.79 7.29 -2.39 -0.02 -0.81 16 33 H 0.25 16.38 7.22 -92.71 -0.67 15.71 16 34 H 0.12 2.87 7.55 -2.39 -0.02 2.85 16 35 H 0.09 1.91 6.83 -2.39 -0.02 1.89 16 36 H 0.09 1.47 8.01 -2.38 -0.02 1.45 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.39 3.52 9.09 -74.05 -0.67 2.85 16 41 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.06 1.55 7.76 -2.39 -0.02 1.53 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 2.02 6.05 -2.38 -0.01 2.00 16 Total: -1.00 -82.57 354.17 -0.13 -82.70 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.39 Total: 14.42 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.03 Total: -0.73 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -5.65 Total: -106.53 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.94 Total: -44.31 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.45 kcal Total: -82.57 -0.13 -82.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249575698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.538 kcal (2) G-P(sol) polarization free energy of solvation -82.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds