Wall clock time and date at job start Tue Mar 31 2020 03:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42891 * 109.47304 * 2 1 4 4 C 1.42906 * 114.00299 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46971 * 329.99536 * 4 3 2 6 6 C 1.53000 * 109.47225 * 89.99715 * 4 3 2 7 7 C 1.50698 * 109.47047 * 210.00082 * 4 3 2 8 8 O 1.21284 * 120.00473 * 354.99560 * 7 4 3 9 9 N 1.34774 * 120.00019 * 174.99992 * 7 4 3 10 10 C 1.46500 * 120.00275 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.47512 * 179.97438 * 10 9 7 12 12 C 1.53041 * 109.46160 * 295.03067 * 11 10 9 13 13 C 1.53193 * 109.31264 * 178.59695 * 12 11 10 14 14 N 1.46924 * 108.76542 * 54.65394 * 13 12 11 15 15 C 1.36932 * 120.63055 * 126.35905 * 14 13 12 16 16 H 1.08004 * 120.00277 * 331.86082 * 15 14 13 17 17 C 1.38821 * 120.00062 * 151.85921 * 15 14 13 18 18 N 1.31612 * 119.99885 * 343.07729 * 17 15 14 19 19 Si 1.86802 * 119.99888 * 163.07563 * 17 15 14 20 20 H 1.48497 * 109.47080 * 60.00318 * 19 17 15 21 21 H 1.48495 * 109.46752 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47072 * 299.99772 * 19 17 15 23 23 C 1.46924 * 118.73917 * 306.38807 * 14 13 12 24 24 C 1.53035 * 109.46226 * 174.97286 * 11 10 9 25 25 H 1.08996 * 109.46791 * 300.00101 * 1 2 3 26 26 H 1.08994 * 109.46916 * 60.00012 * 1 2 3 27 27 H 1.08995 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47206 * 240.00021 * 2 1 3 29 29 H 1.09004 * 109.47419 * 120.00192 * 2 1 3 30 30 H 1.09000 * 109.46966 * 60.00440 * 6 4 3 31 31 H 1.08991 * 109.47004 * 300.00254 * 6 4 3 32 32 H 1.08999 * 109.46953 * 180.02562 * 6 4 3 33 33 H 0.97001 * 119.99850 * 359.97438 * 9 7 4 34 34 H 1.09000 * 109.47227 * 300.00116 * 10 9 7 35 35 H 1.09002 * 109.47125 * 59.99898 * 10 9 7 36 36 H 1.09001 * 109.45305 * 55.00185 * 11 10 9 37 37 H 1.08999 * 109.49716 * 298.56574 * 12 11 10 38 38 H 1.09005 * 109.49709 * 58.66146 * 12 11 10 39 39 H 1.08999 * 109.59718 * 294.86835 * 13 12 11 40 40 H 1.08996 * 109.70179 * 174.50624 * 13 12 11 41 41 H 0.97001 * 120.00354 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.58325 * 293.81633 * 23 14 13 43 43 H 1.09006 * 109.70661 * 173.46852 * 23 14 13 44 44 H 1.09005 * 109.49766 * 301.34101 * 24 11 10 45 45 H 1.08995 * 109.49925 * 61.43600 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8636 0.6015 0.5130 6 6 3.9388 1.5005 -1.4433 7 6 3.8348 2.7262 0.7099 8 8 2.9865 3.5046 1.0913 9 7 5.1387 2.9937 0.9213 10 6 5.5314 4.2248 1.6115 11 6 7.0563 4.2838 1.7213 12 6 7.5476 3.1432 2.6156 13 6 9.0769 3.1844 2.6949 14 7 9.4913 4.5216 3.1407 15 6 10.3185 4.6715 4.2216 16 1 10.3182 3.9319 5.0086 17 6 11.1576 5.7742 4.3058 18 7 11.4129 6.4905 3.2315 19 14 11.9243 6.2415 5.9439 20 1 12.7588 5.1171 6.4385 21 1 12.7723 7.4476 5.7673 22 1 10.8507 6.5316 6.9281 23 6 9.0006 5.6950 2.4051 24 6 7.4722 5.6255 2.3287 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.5061 2.3591 -1.9568 31 1 3.6467 0.5847 -1.9570 32 1 5.0254 1.5861 -1.4437 33 1 5.8172 2.3710 0.6166 34 1 5.1737 5.0869 1.0485 35 1 5.0948 4.2366 2.6102 36 1 7.4959 4.1825 0.7291 37 1 7.1280 3.2579 3.6150 38 1 7.2309 2.1888 2.1948 39 1 9.4997 2.9798 1.7113 40 1 9.4282 2.4369 3.4062 41 1 11.9989 7.2612 3.2904 42 1 9.4172 5.6952 1.3978 43 1 9.2996 6.6057 2.9243 44 1 7.1018 6.4382 1.7038 45 1 7.0534 5.7167 3.3308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330888187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:54 Heat of formation + Delta-G solvation = -79.128844 kcal Electronic energy + Delta-G solvation = -22848.102809 eV Core-core repulsion = 19479.692837 eV Total energy + Delta-G solvation = -3368.409972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.07914 -38.28151 -37.51910 -34.94485 -33.18762 -32.41355 -30.88859 -30.27308 -29.66648 -26.95527 -24.81274 -23.70635 -22.93400 -22.21393 -21.08096 -20.39548 -19.12051 -17.44732 -17.27932 -16.68419 -16.08291 -15.51998 -15.22047 -14.89855 -14.36677 -14.05675 -13.79871 -13.53052 -13.49952 -13.28359 -13.13414 -12.79027 -12.53978 -12.36904 -12.35225 -12.23609 -11.88887 -11.64618 -11.36198 -11.33401 -10.98954 -10.72079 -10.52023 -10.26588 -10.23228 -10.15712 -9.94348 -9.65740 -9.54867 -9.39289 -8.99784 -8.46992 -6.67616 -5.79488 -3.21991 2.58679 2.76358 3.38115 3.44050 3.45433 3.70698 4.47954 4.49445 4.62634 4.68259 4.79132 4.91653 5.02646 5.08854 5.17071 5.22045 5.35793 5.37619 5.41121 5.42904 5.58989 5.59607 5.77683 5.82949 5.85783 5.93343 6.03306 6.13390 6.30878 6.40585 6.45218 6.59102 6.67569 6.75270 6.79477 6.82689 6.96561 7.36036 7.50001 7.65277 7.78757 8.21157 8.44895 9.21060 9.84559 10.41245 11.29027 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.042653 B = 0.002776 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.304427 B =10085.002530 C =10141.685022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.071 3.929 5 H 0.085 0.915 6 C -0.170 4.170 7 C 0.510 3.490 8 O -0.524 6.524 9 N -0.723 5.723 10 C 0.124 3.876 11 C -0.090 4.090 12 C -0.127 4.127 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.172 3.828 24 C -0.133 4.133 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.400 0.600 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.052 0.948 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.291 -12.581 -8.857 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.009 3.991 5 H 0.103 0.897 6 C -0.228 4.228 7 C 0.295 3.705 8 O -0.399 6.399 9 N -0.376 5.376 10 C 0.001 3.999 11 C -0.109 4.109 12 C -0.167 4.167 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.383 4.383 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.046 3.954 24 C -0.173 4.173 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.234 0.766 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.917 -11.694 -8.579 21.533 hybrid contribution 0.968 -0.283 0.627 1.187 sum -14.949 -11.977 -7.952 20.740 Atomic orbital electron populations 1.21726 0.93443 1.02180 1.03452 1.22593 0.95977 0.83614 1.00074 1.88062 1.18436 1.26228 1.94941 1.21891 0.83714 0.96711 0.96767 0.89698 1.22228 1.01813 1.03697 0.95035 1.20344 0.82815 0.87625 0.79740 1.90720 1.50249 1.48831 1.50056 1.46031 1.06726 1.24774 1.60074 1.21597 0.95896 0.85476 0.96897 1.21311 0.91808 0.97890 0.99845 1.22081 0.99389 0.95883 0.99303 1.20884 0.91022 0.89058 0.97140 1.44035 1.54458 0.99289 1.33720 1.19136 1.14514 1.08226 0.96411 0.91819 1.25045 0.97291 1.00347 0.96961 1.70013 1.38398 1.19976 1.26376 0.86373 0.78824 0.77769 0.83822 1.20902 1.21633 1.21021 1.20761 0.86908 0.92439 0.95303 1.22180 1.01276 0.94041 0.99786 0.91629 0.91758 0.91042 0.93230 0.93221 0.91036 0.91304 0.90770 0.76574 0.91723 0.91574 0.91280 0.92148 0.93539 0.96633 0.92901 0.93572 0.96454 0.89408 0.93032 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.44 6.47 37.16 0.24 0.68 16 3 O -0.36 -4.32 9.53 -55.09 -0.52 -4.84 16 4 C 0.07 0.72 3.13 -27.88 -0.09 0.63 16 5 H 0.09 0.66 7.79 -51.93 -0.40 0.25 16 6 C -0.17 -1.34 9.48 37.16 0.35 -0.98 16 7 C 0.51 6.97 7.18 -10.99 -0.08 6.89 16 8 O -0.52 -9.62 16.51 -14.30 -0.24 -9.86 16 9 N -0.72 -8.68 5.23 -60.29 -0.32 -9.00 16 10 C 0.12 1.76 5.06 -4.04 -0.02 1.74 16 11 C -0.09 -1.38 2.19 -90.58 -0.20 -1.58 16 12 C -0.13 -2.04 5.25 -26.61 -0.14 -2.18 16 13 C 0.15 2.91 6.52 -3.71 -0.02 2.88 16 14 N -0.59 -14.52 2.99 -172.32 -0.52 -15.03 16 15 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 16 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 17 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 18 N -0.90 -26.02 11.19 55.49 0.62 -25.39 16 19 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 24 C -0.13 -2.44 5.36 -26.62 -0.14 -2.58 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 29 H 0.05 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 32 H 0.07 0.47 7.93 -51.93 -0.41 0.06 16 33 H 0.40 3.77 7.44 -40.82 -0.30 3.46 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.60 7.15 -51.93 -0.37 0.23 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -32.73 359.09 -8.63 -41.36 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.08 Total: -0.93 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 0.03 Total: 1.71 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.21 Total: -49.42 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.76 Total: -14.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.73 -8.63 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330888187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.772 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds