Wall clock time and date at job start Tue Mar 31 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42891 * 109.47304 * 2 1 4 4 C 1.42906 * 114.00299 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46971 * 329.99536 * 4 3 2 6 6 C 1.53000 * 109.47225 * 89.99715 * 4 3 2 7 7 C 1.50698 * 109.47047 * 210.00082 * 4 3 2 8 8 O 1.21284 * 120.00473 * 354.99560 * 7 4 3 9 9 N 1.34774 * 120.00019 * 174.99992 * 7 4 3 10 10 C 1.46500 * 120.00275 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.47512 * 179.97438 * 10 9 7 12 12 C 1.53041 * 109.46160 * 295.03067 * 11 10 9 13 13 C 1.53193 * 109.31264 * 178.59695 * 12 11 10 14 14 N 1.46924 * 108.76542 * 54.65394 * 13 12 11 15 15 C 1.36932 * 120.63055 * 126.35905 * 14 13 12 16 16 H 1.08004 * 120.00277 * 331.86082 * 15 14 13 17 17 C 1.38821 * 120.00062 * 151.85921 * 15 14 13 18 18 N 1.31612 * 119.99885 * 343.07729 * 17 15 14 19 19 Si 1.86802 * 119.99888 * 163.07563 * 17 15 14 20 20 H 1.48497 * 109.47080 * 60.00318 * 19 17 15 21 21 H 1.48495 * 109.46752 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47072 * 299.99772 * 19 17 15 23 23 C 1.46924 * 118.73917 * 306.38807 * 14 13 12 24 24 C 1.53035 * 109.46226 * 174.97286 * 11 10 9 25 25 H 1.08996 * 109.46791 * 300.00101 * 1 2 3 26 26 H 1.08994 * 109.46916 * 60.00012 * 1 2 3 27 27 H 1.08995 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47206 * 240.00021 * 2 1 3 29 29 H 1.09004 * 109.47419 * 120.00192 * 2 1 3 30 30 H 1.09000 * 109.46966 * 60.00440 * 6 4 3 31 31 H 1.08991 * 109.47004 * 300.00254 * 6 4 3 32 32 H 1.08999 * 109.46953 * 180.02562 * 6 4 3 33 33 H 0.97001 * 119.99850 * 359.97438 * 9 7 4 34 34 H 1.09000 * 109.47227 * 300.00116 * 10 9 7 35 35 H 1.09002 * 109.47125 * 59.99898 * 10 9 7 36 36 H 1.09001 * 109.45305 * 55.00185 * 11 10 9 37 37 H 1.08999 * 109.49716 * 298.56574 * 12 11 10 38 38 H 1.09005 * 109.49709 * 58.66146 * 12 11 10 39 39 H 1.08999 * 109.59718 * 294.86835 * 13 12 11 40 40 H 1.08996 * 109.70179 * 174.50624 * 13 12 11 41 41 H 0.97001 * 120.00354 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.58325 * 293.81633 * 23 14 13 43 43 H 1.09006 * 109.70661 * 173.46852 * 23 14 13 44 44 H 1.09005 * 109.49766 * 301.34101 * 24 11 10 45 45 H 1.08995 * 109.49925 * 61.43600 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8636 0.6015 0.5130 6 6 3.9388 1.5005 -1.4433 7 6 3.8348 2.7262 0.7099 8 8 2.9865 3.5046 1.0913 9 7 5.1387 2.9937 0.9213 10 6 5.5314 4.2248 1.6115 11 6 7.0563 4.2838 1.7213 12 6 7.5476 3.1432 2.6156 13 6 9.0769 3.1844 2.6949 14 7 9.4913 4.5216 3.1407 15 6 10.3185 4.6715 4.2216 16 1 10.3182 3.9319 5.0086 17 6 11.1576 5.7742 4.3058 18 7 11.4129 6.4905 3.2315 19 14 11.9243 6.2415 5.9439 20 1 12.7588 5.1171 6.4385 21 1 12.7723 7.4476 5.7673 22 1 10.8507 6.5316 6.9281 23 6 9.0006 5.6950 2.4051 24 6 7.4722 5.6255 2.3287 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.5061 2.3591 -1.9568 31 1 3.6467 0.5847 -1.9570 32 1 5.0254 1.5861 -1.4437 33 1 5.8172 2.3710 0.6166 34 1 5.1737 5.0869 1.0485 35 1 5.0948 4.2366 2.6102 36 1 7.4959 4.1825 0.7291 37 1 7.1280 3.2579 3.6150 38 1 7.2309 2.1888 2.1948 39 1 9.4997 2.9798 1.7113 40 1 9.4282 2.4369 3.4062 41 1 11.9989 7.2612 3.2904 42 1 9.4172 5.6952 1.3978 43 1 9.2996 6.6057 2.9243 44 1 7.1018 6.4382 1.7038 45 1 7.0534 5.7167 3.3308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330888187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:53 Heat of formation + Delta-G solvation = -100.241420 kcal Electronic energy + Delta-G solvation = -22849.018319 eV Core-core repulsion = 19479.692837 eV Total energy + Delta-G solvation = -3369.325482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.10462 -39.52193 -38.63264 -36.39261 -34.60721 -33.39261 -32.41711 -31.43873 -30.92843 -28.43909 -26.14366 -24.94729 -23.82677 -23.54602 -22.59806 -21.45569 -20.65304 -18.75622 -18.27012 -18.04969 -16.94540 -16.77969 -16.45564 -16.23129 -15.76674 -15.31426 -15.26449 -15.06570 -14.77248 -14.24380 -14.11636 -14.01481 -13.83477 -13.46158 -13.31320 -13.18756 -12.99461 -12.86529 -12.79930 -12.54899 -12.29209 -12.26255 -12.04434 -11.99504 -11.83521 -11.61409 -11.24487 -11.10321 -10.95058 -10.53327 -10.44017 -10.10593 -8.65692 -7.86635 -5.31365 1.46315 1.49147 1.55407 1.56721 1.87498 2.51797 2.95098 3.27773 3.67404 3.72420 3.84651 3.93599 3.95396 4.04155 4.09586 4.21427 4.34373 4.50264 4.52149 4.55127 4.62493 4.70139 4.73512 4.78650 4.84190 4.90483 4.94543 5.02982 5.03333 5.14599 5.21746 5.27756 5.29562 5.30480 5.37939 5.45529 5.56415 5.66762 5.79974 6.14140 6.40790 6.56990 7.16728 7.22454 7.89461 8.39821 9.19307 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.042653 B = 0.002776 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.304427 B =10085.002530 C =10141.685022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.394 6.394 4 C 0.073 3.927 5 H 0.116 0.884 6 C -0.165 4.165 7 C 0.506 3.494 8 O -0.579 6.579 9 N -0.708 5.708 10 C 0.136 3.864 11 C -0.077 4.077 12 C -0.115 4.115 13 C 0.140 3.860 14 N -0.613 5.613 15 C -0.262 4.262 16 H 0.064 0.936 17 C -0.052 4.052 18 N -0.934 5.934 19 Si 0.964 3.036 20 H -0.274 1.274 21 H -0.294 1.294 22 H -0.281 1.281 23 C 0.178 3.822 24 C -0.123 4.123 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.416 0.584 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.051 0.949 41 H 0.249 0.751 42 H 0.000 1.000 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.947 -14.990 -9.484 23.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.313 6.313 4 C 0.012 3.988 5 H 0.134 0.866 6 C -0.222 4.222 7 C 0.293 3.707 8 O -0.458 6.458 9 N -0.362 5.362 10 C 0.013 3.987 11 C -0.095 4.095 12 C -0.154 4.154 13 C 0.014 3.986 14 N -0.336 5.336 15 C -0.393 4.393 16 H 0.082 0.918 17 C -0.247 4.247 18 N -0.580 5.580 19 Si 0.792 3.208 20 H -0.200 1.200 21 H -0.221 1.221 22 H -0.207 1.207 23 C 0.052 3.948 24 C -0.163 4.163 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.254 0.746 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.018 0.982 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.564 -14.162 -9.220 23.663 hybrid contribution 1.164 0.412 0.800 1.471 sum -15.400 -13.750 -8.421 22.296 Atomic orbital electron populations 1.21772 0.93311 1.03439 1.02359 1.22832 0.96230 0.82270 1.01577 1.88030 1.19510 1.28620 1.95187 1.22012 0.83414 0.95456 0.97940 0.86602 1.22230 1.02763 1.03978 0.93276 1.21102 0.82420 0.88290 0.78884 1.90697 1.51737 1.50902 1.52437 1.45851 1.06946 1.24194 1.59233 1.21270 0.94434 0.86515 0.96522 1.21141 0.92692 0.95786 0.99929 1.21942 0.96084 0.98104 0.99227 1.21082 0.93696 0.86729 0.97043 1.44325 1.54473 1.01311 1.33525 1.19466 1.14330 1.08130 0.97350 0.91783 1.25775 0.98373 1.00667 0.99875 1.70161 1.39389 1.20351 1.28142 0.85390 0.77939 0.77281 0.80146 1.20009 1.22066 1.20695 1.20558 0.89952 0.90853 0.93463 1.21985 0.97436 0.96814 1.00050 0.93242 0.92338 0.88593 0.90993 0.92267 0.92897 0.89192 0.88915 0.74612 0.92164 0.92813 0.90114 0.93293 0.89378 0.96168 0.93003 0.94148 0.98202 0.93185 0.91381 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.65 6.47 71.98 0.47 1.12 16 3 O -0.39 -8.86 9.53 -129.99 -1.24 -10.10 16 4 C 0.07 1.28 3.13 29.85 0.09 1.37 16 5 H 0.12 1.30 7.79 -2.39 -0.02 1.28 16 6 C -0.16 -2.06 9.48 71.98 0.68 -1.37 16 7 C 0.51 12.91 7.18 87.66 0.63 13.54 16 8 O -0.58 -21.13 16.51 15.94 0.26 -20.87 16 9 N -0.71 -15.00 5.23 -463.06 -2.42 -17.43 16 10 C 0.14 3.60 5.06 86.38 0.44 4.04 16 11 C -0.08 -2.19 2.19 -10.77 -0.02 -2.22 16 12 C -0.11 -3.36 5.25 30.67 0.16 -3.20 16 13 C 0.14 5.38 6.52 86.36 0.56 5.94 16 14 N -0.61 -30.13 2.99 -699.10 -2.09 -32.23 16 15 C -0.26 -14.38 9.58 84.04 0.81 -13.58 16 16 H 0.06 3.43 7.89 -2.91 -0.02 3.40 16 17 C -0.05 -2.88 4.92 84.87 0.42 -2.47 16 18 N -0.93 -55.25 11.19 21.65 0.24 -55.00 16 19 Si 0.96 44.99 29.59 68.60 2.03 47.02 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 C 0.18 8.40 5.30 86.36 0.46 8.86 16 24 C -0.12 -4.46 5.36 30.67 0.16 -4.29 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.67 7.87 -2.39 -0.02 0.65 16 29 H 0.06 0.70 8.09 -2.38 -0.02 0.68 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.76 7.87 -2.39 -0.02 0.74 16 32 H 0.09 0.80 7.93 -2.39 -0.02 0.78 16 33 H 0.42 6.06 7.44 -92.71 -0.69 5.37 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 1.88 7.15 -2.38 -0.02 1.87 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 41 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 43 H 0.05 2.73 6.06 -2.38 -0.01 2.72 16 44 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -73.70 359.09 2.63 -71.06 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.26 Total: 11.04 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 5.59 Total: 6.50 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -4.27 Total: -104.66 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.98 Total: -30.97 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -73.70 2.63 -71.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330888187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.178 kcal (2) G-P(sol) polarization free energy of solvation -73.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds