Wall clock time and date at job start Tue Mar 31 2020 03:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46767 * 2 1 4 4 C 1.52997 * 109.47290 * 120.00130 * 2 1 3 5 5 N 1.46894 * 109.47106 * 176.34910 * 4 2 1 6 6 C 1.46962 * 110.99944 * 199.34408 * 5 4 2 7 7 C 1.53049 * 109.36612 * 176.80872 * 6 5 4 8 8 N 1.46957 * 109.36040 * 58.40405 * 7 6 5 9 9 C 1.46902 * 111.00121 * 176.81030 * 8 7 6 10 10 C 1.46958 * 110.88280 * 300.67717 * 8 7 6 11 11 C 1.46952 * 111.00269 * 75.54571 * 5 4 2 12 12 N 1.46507 * 109.46812 * 240.00160 * 2 1 3 13 13 C 1.37332 * 119.99842 * 87.63935 * 12 2 1 14 14 O 1.35090 * 120.00339 * 0.02562 * 13 12 2 15 15 N 1.30100 * 119.99702 * 179.97438 * 13 12 2 16 16 C 1.46504 * 120.00008 * 185.26678 * 15 13 12 17 17 C 1.50698 * 109.47356 * 114.72481 * 16 15 13 18 18 H 1.08001 * 119.99712 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00140 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99805 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99929 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47343 * 89.99999 * 21 19 17 23 23 H 1.48498 * 109.46981 * 210.00173 * 21 19 17 24 24 H 1.48499 * 109.46835 * 329.99641 * 21 19 17 25 25 H 1.09002 * 109.46968 * 60.00026 * 1 2 3 26 26 H 1.09003 * 109.47125 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46978 * 299.99767 * 1 2 3 28 28 H 1.08999 * 109.47254 * 296.34902 * 4 2 1 29 29 H 1.09002 * 109.46714 * 56.34642 * 4 2 1 30 30 H 1.08997 * 109.49125 * 296.78293 * 6 5 4 31 31 H 1.08998 * 109.48710 * 56.84525 * 6 5 4 32 32 H 1.08998 * 109.49069 * 298.44081 * 7 6 5 33 33 H 1.08995 * 109.50886 * 178.37456 * 7 6 5 34 34 H 1.09000 * 109.47297 * 183.79442 * 9 8 7 35 35 H 1.08996 * 109.47195 * 303.80051 * 9 8 7 36 36 H 1.09007 * 109.47067 * 63.79857 * 9 8 7 37 37 H 1.09008 * 109.48817 * 299.35734 * 10 8 7 38 38 H 1.08998 * 109.51063 * 179.30283 * 10 8 7 39 39 H 1.08994 * 109.48998 * 303.15750 * 11 5 4 40 40 H 1.09000 * 109.49104 * 63.19980 * 11 5 4 41 41 H 0.96991 * 119.99715 * 267.63577 * 12 2 1 42 42 H 0.96709 * 114.00349 * 85.02116 * 14 13 12 43 43 H 1.08999 * 109.47126 * 234.72722 * 16 15 13 44 44 H 1.09007 * 109.47135 * 354.72258 * 16 15 13 45 45 H 0.97000 * 119.99618 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5064 -0.7981 1.2059 6 6 4.0056 -1.8466 2.1065 7 6 5.5269 -1.9481 1.9731 8 7 6.1321 -0.6485 2.2959 9 6 7.5985 -0.7253 2.2527 10 6 5.6329 0.4000 1.3953 11 6 4.1116 0.5015 1.5287 12 7 2.0183 -0.6906 -1.1963 13 6 2.2010 0.0067 -2.3652 14 8 1.9309 1.3295 -2.4119 15 7 2.6351 -0.6065 -3.4273 16 6 2.9398 0.1563 -4.6404 17 6 4.4169 0.0744 -4.9275 18 1 5.0641 -0.4891 -4.2717 19 6 4.9424 0.7198 -6.0268 20 7 6.2315 0.6487 -6.2770 21 14 3.8234 1.6962 -7.1599 22 1 3.7416 3.1008 -6.6849 23 1 4.3724 1.6714 -8.5395 24 1 2.4667 1.0926 -7.1562 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7312 -0.1711 2.1380 29 1 1.6242 -1.7283 1.2825 30 1 3.7467 -1.5960 3.1352 31 1 3.5527 -2.8013 1.8394 32 1 5.7846 -2.2254 0.9509 33 1 5.9029 -2.7052 2.6611 34 1 8.0217 0.2308 2.5607 35 1 7.9414 -1.5090 2.9281 36 1 7.9205 -0.9546 1.2368 37 1 5.8919 0.1494 0.3666 38 1 6.0859 1.3549 1.6620 39 1 3.7359 1.2586 0.8405 40 1 3.8537 0.7790 2.5507 41 1 2.2126 -1.6403 -1.1626 42 1 2.6609 1.8907 -2.1162 43 1 2.3829 -0.2590 -5.4803 44 1 2.6551 1.1985 -4.4954 45 1 6.6011 1.1024 -7.0506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331121723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:27 Heat of formation + Delta-G solvation = 1.354770 kcal Electronic energy + Delta-G solvation = -23468.552555 eV Core-core repulsion = 20135.925365 eV Total energy + Delta-G solvation = -3332.627190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.62119 -38.55174 -36.52491 -34.41583 -33.64043 -32.13290 -31.07394 -30.45956 -28.67449 -27.11572 -25.46659 -23.85343 -23.23853 -22.30337 -20.71036 -20.05928 -19.87730 -17.71833 -16.65404 -16.48965 -15.75004 -15.45620 -15.14731 -15.06352 -14.85476 -14.45536 -14.27220 -14.24170 -13.96493 -13.18466 -12.75045 -12.64884 -12.46366 -12.41295 -12.14361 -12.11847 -11.88735 -11.72299 -11.36988 -11.30267 -11.14951 -10.94312 -10.67919 -10.62195 -10.54344 -10.40340 -9.74970 -9.28917 -8.62310 -8.56264 -8.36692 -8.24440 -7.14054 -5.99688 -3.96186 3.20483 3.33768 3.40693 3.47137 3.60522 3.76547 3.81029 4.48503 4.63541 4.71538 4.88428 4.94159 5.03209 5.08020 5.19402 5.24910 5.29299 5.33545 5.36023 5.40032 5.42279 5.44914 5.55774 5.63326 5.70860 5.73725 5.79529 5.83837 5.91321 5.96650 6.21083 6.46244 6.76313 6.80323 6.97658 6.98527 7.04597 7.23913 7.35454 7.77280 8.01420 8.34692 8.60448 9.08072 9.36511 9.64939 11.13685 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.004703 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.267417 B = 5952.123510 C = 7368.010612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.164 3.836 3 H 0.072 0.928 4 C 0.048 3.952 5 N -0.531 5.531 6 C 0.060 3.940 7 C 0.054 3.946 8 N -0.546 5.546 9 C 0.024 3.976 10 C 0.053 3.947 11 C 0.061 3.939 12 N -0.708 5.708 13 C 0.518 3.482 14 O -0.533 6.533 15 N -0.566 5.566 16 C 0.167 3.833 17 C -0.506 4.506 18 H 0.074 0.926 19 C 0.067 3.933 20 N -0.904 5.904 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.266 1.266 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.412 0.588 42 H 0.389 0.611 43 H 0.030 0.970 44 H 0.001 0.999 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 -1.123 21.854 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.056 3.944 3 H 0.090 0.910 4 C -0.080 4.080 5 N -0.256 5.256 6 C -0.068 4.068 7 C -0.074 4.074 8 N -0.271 5.271 9 C -0.124 4.124 10 C -0.075 4.075 11 C -0.067 4.067 12 N -0.360 5.360 13 C 0.202 3.798 14 O -0.335 6.335 15 N -0.305 5.305 16 C 0.038 3.962 17 C -0.544 4.544 18 H 0.093 0.907 19 C -0.134 4.134 20 N -0.543 5.543 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.190 1.190 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.249 0.751 42 H 0.246 0.754 43 H 0.048 0.952 44 H 0.019 0.981 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.067 -1.724 21.180 22.099 hybrid contribution 0.031 1.278 -0.481 1.366 sum -6.036 -0.446 20.699 21.565 Atomic orbital electron populations 1.22273 0.95923 1.02183 1.02111 1.20654 0.92857 0.96467 0.84406 0.90980 1.22418 0.87658 1.01339 0.96608 1.62037 1.05620 1.05646 1.52255 1.22142 0.94737 0.95372 0.94528 1.22173 0.93972 0.90964 1.00305 1.62214 1.06632 1.05874 1.52402 1.22343 0.87309 1.02374 1.00400 1.22180 0.94569 0.95149 0.95567 1.22143 0.94044 0.91234 0.99254 1.43908 1.74232 1.11817 1.06040 1.20372 0.92508 0.78950 0.87988 1.84785 1.44649 1.16418 1.87625 1.72304 1.19539 1.36766 1.01927 1.19880 0.97191 0.91628 0.87521 1.21073 0.90784 1.31681 1.10900 0.90741 1.24901 0.94919 0.96298 0.97273 1.69906 1.11519 1.44290 1.28610 0.86806 0.81633 0.80698 0.80328 1.20306 1.21222 1.19050 0.91691 0.92463 0.92432 0.93430 0.90297 0.94329 0.90247 0.93433 0.90525 0.91418 0.91533 0.95153 0.93179 0.90425 0.90311 0.94291 0.75087 0.75441 0.95191 0.98076 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.51 37.16 0.35 -1.31 16 2 C 0.16 1.80 2.67 -67.93 -0.18 1.62 16 3 H 0.07 0.81 6.35 -51.93 -0.33 0.48 16 4 C 0.05 0.44 4.56 -3.83 -0.02 0.43 16 5 N -0.53 -5.71 4.40 -234.48 -1.03 -6.74 16 6 C 0.06 0.58 5.57 -3.77 -0.02 0.56 16 7 C 0.05 0.57 5.62 -3.77 -0.02 0.55 16 8 N -0.55 -6.00 4.97 -242.75 -1.21 -7.21 16 9 C 0.02 0.23 9.60 60.07 0.58 0.81 16 10 C 0.05 0.62 5.62 -3.77 -0.02 0.60 16 11 C 0.06 0.65 5.43 -3.77 -0.02 0.63 16 12 N -0.71 -10.48 4.91 -56.01 -0.28 -10.75 16 13 C 0.52 10.03 8.58 -88.57 -0.76 9.27 16 14 O -0.53 -9.54 10.90 -16.97 -0.18 -9.72 16 15 N -0.57 -13.65 10.59 -63.71 -0.67 -14.33 16 16 C 0.17 4.48 5.16 -5.19 -0.03 4.46 16 17 C -0.51 -15.40 9.94 -34.44 -0.34 -15.75 16 18 H 0.07 2.49 8.06 -52.49 -0.42 2.07 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 20 N -0.90 -28.60 13.96 55.43 0.77 -27.83 16 21 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.27 -6.68 6.54 56.52 0.37 -6.31 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.38 8.00 -51.93 -0.42 -0.03 16 29 H 0.08 0.66 7.85 -51.93 -0.41 0.26 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.69 8.00 -51.93 -0.42 0.28 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.84 6.85 -51.93 -0.36 0.48 16 40 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.41 6.17 8.74 -40.82 -0.36 5.82 16 42 H 0.39 5.70 9.06 45.56 0.41 6.12 16 43 H 0.03 0.84 7.20 -51.93 -0.37 0.46 16 44 H 0.00 0.04 6.16 -51.92 -0.32 -0.28 16 45 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -34.66 357.93 -9.67 -44.34 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.22 Total: 5.24 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.58 Total: 3.79 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -2.41 Total: -66.85 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.18 Total: -9.72 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.66 -9.67 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331121723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.693 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds