Wall clock time and date at job start Tue Mar 31 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47022 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99674 * 3 2 1 5 5 C 1.50699 * 109.47398 * 270.00022 * 4 3 2 6 6 H 1.08003 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00048 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00473 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47398 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47236 * 120.00416 * 9 7 5 12 12 H 1.48507 * 109.47103 * 240.00011 * 9 7 5 13 13 C 1.34777 * 119.99832 * 90.00138 * 3 2 1 14 14 O 1.21278 * 119.99854 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00161 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47107 * 180.02562 * 15 13 3 17 17 C 1.46902 * 111.00255 * 293.95458 * 16 15 13 18 18 C 1.46901 * 111.00103 * 169.99758 * 16 15 13 19 19 H 1.09008 * 110.43045 * 61.08917 * 18 16 15 20 20 C 1.54883 * 110.48830 * 298.55035 * 18 16 15 21 21 C 1.54893 * 102.74996 * 203.37650 * 20 18 16 22 22 C 1.54270 * 104.19197 * 37.94131 * 21 20 18 23 23 C 1.53872 * 106.59899 * 336.39164 * 22 21 20 24 24 H 1.09003 * 110.03220 * 240.71458 * 23 22 21 25 25 O 1.42898 * 110.03222 * 119.28531 * 23 22 21 26 26 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47443 * 299.99879 * 1 2 3 28 28 H 1.09000 * 109.47099 * 60.00377 * 1 2 3 29 29 H 1.08997 * 109.47614 * 239.99880 * 2 1 3 30 30 H 1.09000 * 109.47099 * 119.99622 * 2 1 3 31 31 H 1.09000 * 109.47082 * 30.00019 * 4 3 2 32 32 H 1.09004 * 109.46754 * 150.00286 * 4 3 2 33 33 H 0.96999 * 120.00725 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47152 * 60.00245 * 15 13 3 35 35 H 1.09001 * 109.46980 * 300.00345 * 15 13 3 36 36 H 1.09005 * 109.46528 * 59.99744 * 17 16 15 37 37 H 1.09000 * 109.46785 * 179.97438 * 17 16 15 38 38 H 1.08997 * 109.47044 * 300.00388 * 17 16 15 39 39 H 1.08999 * 110.75740 * 321.69150 * 20 18 16 40 40 H 1.09008 * 110.75802 * 85.06151 * 20 18 16 41 41 H 1.09000 * 110.48618 * 156.61878 * 21 20 18 42 42 H 1.08999 * 110.48399 * 279.26187 * 21 20 18 43 43 H 1.09001 * 110.02812 * 95.67814 * 22 21 20 44 44 H 1.09001 * 110.02787 * 217.10311 * 22 21 20 45 45 H 0.96702 * 113.99877 * 62.83409 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1493 2.3905 -2.8774 8 7 3.3497 3.1274 -3.6171 9 14 5.9134 2.0964 -3.4169 10 1 6.6007 1.2405 -2.4169 11 1 5.9205 1.4183 -4.7380 12 1 6.6216 3.3973 -3.5245 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3063 2.4723 16 7 2.3090 2.2065 3.5889 17 6 3.7457 2.5104 3.6278 18 6 1.8557 1.6408 4.8666 19 1 2.3563 0.6923 5.0617 20 6 0.3185 1.4513 4.8607 21 6 -0.0322 1.4559 6.3694 22 6 0.9096 2.5180 6.9735 23 6 2.1099 2.6355 6.0179 24 1 3.0302 2.3745 6.5406 25 8 2.1985 3.9662 5.5046 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0955 3.1411 -1.1383 33 1 3.6759 3.5185 -4.4426 34 1 2.6211 0.4186 2.5303 35 1 0.9431 1.0125 2.5299 36 1 4.0404 2.9922 2.6955 37 1 3.9531 3.1788 4.4634 38 1 4.3093 1.5858 3.7529 39 1 -0.1708 2.2793 4.3479 40 1 0.0484 0.4990 4.4042 41 1 -1.0738 1.7408 6.5180 42 1 0.1633 0.4781 6.8095 43 1 0.3945 3.4759 7.0456 44 1 1.2472 2.1999 7.9598 45 1 2.3579 4.6388 6.1808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352669476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:40 Heat of formation + Delta-G solvation = -75.548080 kcal Electronic energy + Delta-G solvation = -23877.088860 eV Core-core repulsion = 20508.834161 eV Total energy + Delta-G solvation = -3368.254699 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -39.73056 -38.64030 -35.77616 -35.06213 -34.42205 -32.73340 -30.02614 -28.84059 -28.36175 -27.25421 -26.36537 -23.72068 -22.91526 -22.04537 -20.75466 -19.75440 -18.16934 -17.42047 -16.67103 -16.33661 -15.64149 -15.48727 -15.00336 -14.87422 -14.48904 -14.18415 -13.78562 -13.54526 -13.33518 -13.22762 -12.63912 -12.54614 -12.49801 -11.99205 -11.80298 -11.63277 -11.48899 -11.40328 -11.18920 -11.03605 -10.93191 -10.83501 -10.79874 -10.62692 -10.49513 -10.42457 -10.05224 -9.90981 -9.54276 -8.71670 -8.38480 -7.89731 -7.53270 -5.98745 -4.03147 3.32606 3.40017 3.43602 3.59398 3.72827 4.13146 4.35390 4.45359 4.48346 4.52903 4.84894 5.12521 5.18189 5.20148 5.29347 5.34764 5.35961 5.43218 5.48493 5.60301 5.63579 5.67699 5.71144 5.78285 5.80354 5.86759 5.93745 6.01683 6.02469 6.09640 6.24374 6.29077 6.54258 6.62547 7.09156 7.29991 7.38073 7.55073 7.66929 7.77536 7.98990 8.30958 8.56185 8.98143 9.27374 9.62140 11.09230 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.004196 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.297441 B = 6671.958928 C = 7372.663717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.602 5.602 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.033 3.967 16 N -0.496 5.496 17 C 0.023 3.977 18 C 0.084 3.916 19 H 0.050 0.950 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.156 4.156 23 C 0.108 3.892 24 H 0.050 0.950 25 O -0.532 6.532 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.007 0.993 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.279 -6.856 20.082 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.396 6.396 15 C -0.098 4.098 16 N -0.219 5.219 17 C -0.125 4.125 18 C -0.025 4.025 19 H 0.068 0.932 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.194 4.194 23 C 0.048 3.952 24 H 0.068 0.932 25 O -0.335 6.335 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.025 0.975 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.409 -5.995 19.241 21.148 hybrid contribution 1.481 -0.833 0.298 1.725 sum -4.928 -6.828 19.539 21.276 Atomic orbital electron populations 1.22226 0.96901 1.01234 1.02375 1.21377 0.93454 0.84482 1.02386 1.48253 1.64427 1.13105 1.07701 1.19228 0.96060 0.93697 0.78178 1.21485 0.97017 1.31586 1.06120 0.92562 1.24930 0.97740 0.95006 0.96456 1.69942 1.35540 1.33554 1.14373 0.86468 0.84824 0.78017 0.78243 1.19893 1.21026 1.20899 1.20118 0.78829 0.87094 0.84661 1.90639 1.44574 1.17668 1.86716 1.22146 1.02090 0.94207 0.91340 1.61592 1.17828 1.42378 1.00140 1.22572 0.85842 0.98891 1.05158 1.22594 0.96087 0.94282 0.89550 0.93189 1.22607 0.94631 1.02228 0.96145 1.22243 0.99347 0.98581 0.95661 1.22921 0.97240 1.00567 0.98645 1.22352 0.95705 0.84276 0.92827 0.93204 1.86879 1.95011 1.15036 1.36557 0.92326 0.93065 0.92017 0.90091 0.92101 0.95178 0.93896 0.92842 0.93157 0.88732 0.88950 0.90855 0.97479 0.89752 0.91624 0.91354 0.91716 0.90618 0.91677 0.78960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.15 0.38 -1.95 16 2 C 0.11 1.77 5.93 -4.04 -0.02 1.75 16 3 N -0.60 -13.12 2.46 -175.06 -0.43 -13.55 16 4 C 0.25 6.64 5.16 -5.20 -0.03 6.61 16 5 C -0.52 -15.13 9.39 -34.44 -0.32 -15.45 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.51 11.09 7.40 -10.98 -0.08 11.01 16 14 O -0.52 -13.72 13.89 5.56 0.08 -13.64 16 15 C 0.03 0.55 3.87 -4.98 -0.02 0.53 16 16 N -0.50 -8.09 3.82 -234.33 -0.90 -8.98 16 17 C 0.02 0.39 8.76 60.07 0.53 0.91 16 18 C 0.08 1.04 2.52 -66.06 -0.17 0.87 16 19 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 20 C -0.12 -1.28 5.30 -24.74 -0.13 -1.41 16 21 C -0.12 -1.01 6.83 -25.07 -0.17 -1.18 16 22 C -0.16 -1.30 6.61 -25.61 -0.17 -1.47 16 23 C 0.11 1.15 3.31 -25.62 -0.08 1.07 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 O -0.53 -6.67 10.86 -35.23 -0.38 -7.05 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.68 7.22 -51.93 -0.37 0.30 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 30 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.05 0.76 7.38 -51.93 -0.38 0.38 16 35 H 0.09 1.36 5.65 -51.93 -0.29 1.06 16 36 H 0.09 1.92 5.88 -51.93 -0.31 1.62 16 37 H 0.07 1.13 5.96 -51.93 -0.31 0.82 16 38 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.63 7.72 -51.92 -0.40 0.23 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.63 7.95 -51.93 -0.41 0.22 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.36 2.91 9.11 45.56 0.42 3.33 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -34.93 352.22 -7.97 -42.90 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.97 Total: 1.20 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.39 Total: 2.95 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.59 Total: -48.87 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.31 Total: -20.69 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.93 -7.97 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352669476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.648 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds