Wall clock time and date at job start Tue Mar 31 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47022 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99674 * 3 2 1 5 5 C 1.50699 * 109.47398 * 270.00022 * 4 3 2 6 6 H 1.08003 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00048 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00473 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47398 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47236 * 120.00416 * 9 7 5 12 12 H 1.48507 * 109.47103 * 240.00011 * 9 7 5 13 13 C 1.34777 * 119.99832 * 90.00138 * 3 2 1 14 14 O 1.21278 * 119.99854 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00161 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47107 * 180.02562 * 15 13 3 17 17 C 1.46902 * 111.00255 * 293.95458 * 16 15 13 18 18 C 1.46901 * 111.00103 * 169.99758 * 16 15 13 19 19 H 1.09008 * 110.43045 * 61.08917 * 18 16 15 20 20 C 1.54883 * 110.48830 * 298.55035 * 18 16 15 21 21 C 1.54893 * 102.74996 * 203.37650 * 20 18 16 22 22 C 1.54270 * 104.19197 * 37.94131 * 21 20 18 23 23 C 1.53872 * 106.59899 * 336.39164 * 22 21 20 24 24 H 1.09003 * 110.03220 * 240.71458 * 23 22 21 25 25 O 1.42898 * 110.03222 * 119.28531 * 23 22 21 26 26 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47443 * 299.99879 * 1 2 3 28 28 H 1.09000 * 109.47099 * 60.00377 * 1 2 3 29 29 H 1.08997 * 109.47614 * 239.99880 * 2 1 3 30 30 H 1.09000 * 109.47099 * 119.99622 * 2 1 3 31 31 H 1.09000 * 109.47082 * 30.00019 * 4 3 2 32 32 H 1.09004 * 109.46754 * 150.00286 * 4 3 2 33 33 H 0.96999 * 120.00725 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47152 * 60.00245 * 15 13 3 35 35 H 1.09001 * 109.46980 * 300.00345 * 15 13 3 36 36 H 1.09005 * 109.46528 * 59.99744 * 17 16 15 37 37 H 1.09000 * 109.46785 * 179.97438 * 17 16 15 38 38 H 1.08997 * 109.47044 * 300.00388 * 17 16 15 39 39 H 1.08999 * 110.75740 * 321.69150 * 20 18 16 40 40 H 1.09008 * 110.75802 * 85.06151 * 20 18 16 41 41 H 1.09000 * 110.48618 * 156.61878 * 21 20 18 42 42 H 1.08999 * 110.48399 * 279.26187 * 21 20 18 43 43 H 1.09001 * 110.02812 * 95.67814 * 22 21 20 44 44 H 1.09001 * 110.02787 * 217.10311 * 22 21 20 45 45 H 0.96702 * 113.99877 * 62.83409 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1493 2.3905 -2.8774 8 7 3.3497 3.1274 -3.6171 9 14 5.9134 2.0964 -3.4169 10 1 6.6007 1.2405 -2.4169 11 1 5.9205 1.4183 -4.7380 12 1 6.6216 3.3973 -3.5245 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3063 2.4723 16 7 2.3090 2.2065 3.5889 17 6 3.7457 2.5104 3.6278 18 6 1.8557 1.6408 4.8666 19 1 2.3563 0.6923 5.0617 20 6 0.3185 1.4513 4.8607 21 6 -0.0322 1.4559 6.3694 22 6 0.9096 2.5180 6.9735 23 6 2.1099 2.6355 6.0179 24 1 3.0302 2.3745 6.5406 25 8 2.1985 3.9662 5.5046 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0955 3.1411 -1.1383 33 1 3.6759 3.5185 -4.4426 34 1 2.6211 0.4186 2.5303 35 1 0.9431 1.0125 2.5299 36 1 4.0404 2.9922 2.6955 37 1 3.9531 3.1788 4.4634 38 1 4.3093 1.5858 3.7529 39 1 -0.1708 2.2793 4.3479 40 1 0.0484 0.4990 4.4042 41 1 -1.0738 1.7408 6.5180 42 1 0.1633 0.4781 6.8095 43 1 0.3945 3.4759 7.0456 44 1 1.2472 2.1999 7.9598 45 1 2.3579 4.6388 6.1808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352669476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:39 Heat of formation + Delta-G solvation = -101.801610 kcal Electronic energy + Delta-G solvation = -23878.227298 eV Core-core repulsion = 20508.834161 eV Total energy + Delta-G solvation = -3369.393137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.03553 -39.91403 -37.14628 -36.49621 -35.37998 -34.88562 -31.63547 -30.29749 -29.23827 -28.53012 -27.83755 -25.34895 -24.38738 -23.59547 -21.51221 -20.69431 -19.78434 -18.62327 -18.37376 -17.96336 -17.19873 -16.77015 -16.37924 -16.10195 -15.81338 -15.48663 -15.17946 -14.68705 -14.59098 -14.50117 -14.37113 -13.86222 -13.59143 -13.44014 -13.31602 -13.10499 -12.94431 -12.67668 -12.63235 -12.46144 -12.28728 -12.15391 -12.11855 -11.92056 -11.80598 -11.66642 -11.56247 -11.25592 -10.71406 -10.65069 -10.42853 -9.38675 -9.10685 -8.21871 -6.37093 1.34746 1.37695 1.49334 1.90913 2.24826 2.41285 2.99522 3.07087 3.46667 3.66776 3.71952 3.79069 4.08543 4.11531 4.27709 4.31873 4.39572 4.42506 4.46734 4.48046 4.56922 4.65434 4.68507 4.81598 4.87550 4.94902 4.99760 5.04095 5.06192 5.13184 5.19035 5.22554 5.24150 5.26451 5.39869 5.48914 5.59645 5.88653 6.03868 6.08448 6.26700 6.71729 6.86790 7.09578 7.29654 7.58868 8.85277 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.004196 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.297441 B = 6671.958928 C = 7372.663717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.495 3.505 14 O -0.578 6.578 15 C 0.050 3.950 16 N -0.519 5.519 17 C 0.033 3.967 18 C 0.076 3.924 19 H 0.068 0.932 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.149 4.149 23 C 0.103 3.897 24 H 0.063 0.937 25 O -0.564 6.564 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.021 0.979 32 H -0.008 1.008 33 H 0.267 0.733 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.022 0.978 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.279 -9.522 22.296 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.192 1.192 12 H -0.208 1.208 13 C 0.284 3.716 14 O -0.458 6.458 15 C -0.081 4.081 16 N -0.243 5.243 17 C -0.115 4.115 18 C -0.032 4.032 19 H 0.086 0.914 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.187 4.187 23 C 0.044 3.956 24 H 0.081 0.919 25 O -0.370 6.370 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.039 0.961 32 H 0.010 0.990 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.440 -8.707 21.487 24.062 hybrid contribution 1.438 0.031 -0.370 1.486 sum -5.001 -8.676 21.117 23.371 Atomic orbital electron populations 1.22152 0.94546 1.03517 1.01611 1.21728 0.95369 0.81425 1.03710 1.48298 1.64442 1.15070 1.06128 1.18649 0.95236 0.91350 0.80473 1.21730 0.97859 1.31835 1.06462 0.93017 1.25877 1.02459 0.94467 0.96433 1.70064 1.37742 1.34247 1.14863 0.85353 0.78929 0.77990 0.78422 1.19142 1.19242 1.20804 1.21205 0.77394 0.86716 0.86300 1.90613 1.47026 1.20439 1.87693 1.22028 1.03981 0.93864 0.88208 1.61496 1.17295 1.43609 1.01910 1.22359 0.86868 0.99387 1.02904 1.22840 0.97116 0.95370 0.87849 0.91405 1.22604 0.93254 1.01833 0.97960 1.22251 0.99712 0.99598 0.93699 1.22870 0.96198 1.00581 0.99055 1.22513 0.97386 0.83113 0.92588 0.91909 1.86823 1.95224 1.16470 1.38470 0.88409 0.92271 0.94381 0.90983 0.88510 0.96147 0.98961 0.92431 0.90876 0.86127 0.93737 0.89874 0.95983 0.92551 0.90097 0.90712 0.89777 0.91021 0.89468 0.77059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 10.24 71.98 0.74 -3.37 16 2 C 0.10 3.17 5.93 86.38 0.51 3.68 16 3 N -0.61 -27.11 2.46 -826.17 -2.03 -29.14 16 4 C 0.26 14.97 5.16 85.63 0.44 15.41 16 5 C -0.54 -32.30 9.39 25.60 0.24 -32.06 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 9 Si 0.97 46.18 29.54 68.60 2.03 48.21 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 13 C 0.50 22.21 7.40 87.66 0.65 22.86 16 14 O -0.58 -32.36 13.89 -3.02 -0.04 -32.40 16 15 C 0.05 1.57 3.87 85.56 0.33 1.90 16 16 N -0.52 -16.50 3.82 -895.28 -3.42 -19.93 16 17 C 0.03 1.11 8.76 127.69 1.12 2.23 16 18 C 0.08 1.69 2.52 45.99 0.12 1.81 16 19 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 20 C -0.12 -2.25 5.30 31.88 0.17 -2.08 16 21 C -0.11 -1.52 6.83 31.67 0.22 -1.31 16 22 C -0.15 -2.03 6.61 31.32 0.21 -1.83 16 23 C 0.10 1.97 3.31 31.32 0.10 2.07 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 O -0.56 -13.79 10.86 -148.98 -1.62 -15.41 16 26 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.06 1.42 7.22 -2.38 -0.02 1.41 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 30 H 0.10 2.38 6.44 -2.39 -0.02 2.36 16 31 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 32 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.07 1.98 7.38 -2.39 -0.02 1.96 16 35 H 0.12 3.14 5.65 -2.39 -0.01 3.12 16 36 H 0.04 1.94 5.88 -2.38 -0.01 1.92 16 37 H 0.08 2.57 5.96 -2.39 -0.01 2.56 16 38 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.26 7.72 -2.38 -0.02 1.24 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 1.05 7.95 -2.39 -0.02 1.03 16 44 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.38 5.86 9.11 -74.06 -0.67 5.19 16 Total: -1.00 -81.23 352.22 0.80 -80.43 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.29 Total: 15.73 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 5.30 Total: 10.15 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -5.17 Total: -106.72 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -1.66 Total: -47.81 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -81.23 0.80 -80.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352669476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.369 kcal (2) G-P(sol) polarization free energy of solvation -81.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds