Wall clock time and date at job start Tue Mar 31 2020 03:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47300 * 2 1 4 4 C 1.46497 * 120.00232 * 270.00347 * 3 2 1 5 5 C 1.50700 * 109.47079 * 269.99708 * 4 3 2 6 6 H 1.07997 * 119.99865 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00209 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99868 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00250 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47308 * 59.99696 * 9 7 5 11 11 H 1.48500 * 109.47054 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47001 * 299.99799 * 9 7 5 13 13 C 1.34774 * 119.99541 * 89.99810 * 3 2 1 14 14 O 1.21283 * 119.99840 * 180.02562 * 13 3 2 15 15 C 1.50704 * 120.00348 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47163 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99619 * 293.95170 * 16 15 13 18 18 C 1.46894 * 110.99911 * 169.99863 * 16 15 13 19 19 H 1.08999 * 110.43312 * 57.45693 * 18 16 15 20 20 C 1.54268 * 110.48893 * 294.77461 * 18 16 15 21 21 C 1.53870 * 106.59844 * 217.71404 * 20 18 16 22 22 C 1.54470 * 106.68508 * 0.15259 * 21 20 18 23 23 C 1.54884 * 104.09863 * 23.34750 * 22 21 20 24 24 H 1.09003 * 110.76229 * 80.71008 * 23 22 21 25 25 O 1.42903 * 110.75583 * 203.88755 * 23 22 21 26 26 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47260 * 299.99715 * 1 2 3 28 28 H 1.09006 * 109.47186 * 60.00123 * 1 2 3 29 29 H 1.09003 * 109.47260 * 240.00285 * 2 1 3 30 30 H 1.09001 * 109.47123 * 120.00365 * 2 1 3 31 31 H 1.08997 * 109.47100 * 29.99453 * 4 3 2 32 32 H 1.08999 * 109.47031 * 149.99790 * 4 3 2 33 33 H 0.96999 * 119.99815 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46866 * 60.00125 * 15 13 3 35 35 H 1.09003 * 109.46892 * 299.99980 * 15 13 3 36 36 H 1.08998 * 109.47733 * 296.04533 * 17 16 15 37 37 H 1.09006 * 109.47051 * 56.05178 * 17 16 15 38 38 H 1.09006 * 109.46610 * 176.04685 * 17 16 15 39 39 H 1.08998 * 110.02561 * 336.99384 * 20 18 16 40 40 H 1.08997 * 110.03381 * 98.42540 * 20 18 16 41 41 H 1.08997 * 110.03834 * 119.28286 * 21 20 18 42 42 H 1.09003 * 110.03368 * 240.66909 * 21 20 18 43 43 H 1.08993 * 110.40965 * 264.75726 * 22 21 20 44 44 H 1.09007 * 110.65991 * 142.05662 * 22 21 20 45 45 H 0.96700 * 114.00311 * 296.06727 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1494 2.3906 -2.8774 8 7 3.3493 3.1267 -3.6175 9 14 5.9134 2.0965 -3.4170 10 1 6.1402 0.6398 -3.5955 11 1 6.1612 2.7978 -4.7023 12 1 6.8413 2.6188 -2.3819 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9922 1.3058 2.4723 16 7 2.3097 2.2061 3.5890 17 6 3.7463 2.5108 3.6273 18 6 1.8574 1.6398 4.8667 19 1 2.3099 0.6619 5.0310 20 6 0.3184 1.5377 4.8974 21 6 -0.1168 1.8871 6.3313 22 6 1.1731 2.1939 7.1239 23 6 2.1979 2.5979 6.0351 24 1 2.0556 3.6366 5.7369 25 8 3.5344 2.3833 6.4930 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6878 -2.0283 32 1 2.0955 3.1411 -1.1383 33 1 3.6756 3.5179 -4.4430 34 1 2.6228 0.4186 2.5299 35 1 0.9444 1.0113 2.5302 36 1 4.3067 1.5965 3.8222 37 1 4.0547 2.9288 2.6689 38 1 3.9433 3.2336 4.4192 39 1 -0.1168 2.2457 4.1921 40 1 0.0065 0.5232 4.6492 41 1 -0.7632 2.7646 6.3221 42 1 -0.6406 1.0424 6.7788 43 1 1.5124 1.3055 7.6564 44 1 1.0105 3.0176 7.8191 45 1 3.7840 2.9317 7.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352669479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:57 Heat of formation + Delta-G solvation = -82.622637 kcal Electronic energy + Delta-G solvation = -23748.873991 eV Core-core repulsion = 20380.312516 eV Total energy + Delta-G solvation = -3368.561475 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -39.74789 -38.66655 -35.94021 -35.21213 -34.54855 -32.75070 -30.05588 -28.86075 -28.37891 -27.21783 -26.39134 -23.73808 -22.94293 -22.04879 -20.77194 -19.87035 -18.20889 -17.56505 -16.76574 -16.38297 -15.88510 -15.41720 -15.09488 -14.71459 -14.51335 -14.19397 -13.82702 -13.62868 -13.34504 -13.23518 -12.65893 -12.56105 -12.44014 -12.21332 -11.91193 -11.69948 -11.66689 -11.47803 -11.23247 -11.09437 -10.96163 -10.86632 -10.68089 -10.65980 -10.53328 -10.47132 -10.07301 -10.03086 -9.59746 -8.78472 -8.39342 -8.04177 -7.57572 -6.00289 -4.04905 3.34142 3.38545 3.40955 3.53783 3.67340 4.01250 4.25730 4.35927 4.49024 4.66113 4.80996 5.13949 5.16873 5.24223 5.29410 5.31844 5.34227 5.38632 5.42818 5.59297 5.60080 5.65867 5.69452 5.79092 5.83911 5.86771 5.94063 6.00356 6.05364 6.07736 6.17700 6.26793 6.51645 6.59471 7.04834 7.21842 7.30964 7.51592 7.51875 7.63063 7.96936 8.28726 8.51703 8.95502 9.21695 9.60261 11.07636 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.023048 B = 0.004126 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.588498 B = 6784.944189 C = 7568.983816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.036 3.964 16 N -0.516 5.516 17 C 0.025 3.975 18 C 0.087 3.913 19 H 0.052 0.948 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.155 4.155 23 C 0.104 3.896 24 H 0.076 0.924 25 O -0.562 6.562 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.016 0.984 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.001 -5.972 19.490 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.096 4.096 16 N -0.240 5.240 17 C -0.123 4.123 18 C -0.022 4.022 19 H 0.070 0.930 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.194 4.194 23 C 0.045 3.955 24 H 0.094 0.906 25 O -0.367 6.367 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.035 0.965 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.042 -5.235 18.707 20.663 hybrid contribution 1.339 -0.670 0.180 1.509 sum -5.702 -5.905 18.887 20.594 Atomic orbital electron populations 1.22224 0.96850 1.01294 1.02347 1.21394 0.93483 0.84417 1.02489 1.48255 1.64237 1.13135 1.07695 1.19226 0.96079 0.93654 0.78130 1.21409 0.96996 1.31825 1.06207 0.92640 1.24926 0.97760 0.94958 0.96412 1.69927 1.35672 1.33442 1.14386 0.86579 0.84936 0.78199 0.77817 1.20305 1.21190 1.20209 1.20115 0.78796 0.87078 0.84691 1.90633 1.44791 1.17763 1.86783 1.22089 1.02150 0.94342 0.90970 1.61816 1.18317 1.43021 1.00825 1.22533 0.85707 0.99749 1.04262 1.22444 0.95126 0.96067 0.88542 0.93018 1.22182 0.94071 1.02165 0.97401 1.22009 0.97009 1.01574 0.95033 1.23036 0.96301 1.01840 0.98180 1.22831 0.81101 0.99035 0.92561 0.90627 1.86556 1.30051 1.67416 1.52693 0.92276 0.93080 0.92004 0.90024 0.92031 0.95141 0.93907 0.92715 0.92779 0.88691 0.96499 0.89235 0.91096 0.89937 0.91513 0.91427 0.91625 0.90869 0.91341 0.77806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.89 2.46 -175.06 -0.43 -13.32 16 4 C 0.25 6.58 5.16 -5.20 -0.03 6.55 16 5 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.51 10.85 7.37 -10.98 -0.08 10.77 16 14 O -0.52 -13.46 13.91 5.55 0.08 -13.38 16 15 C 0.04 0.57 3.89 -4.97 -0.02 0.56 16 16 N -0.52 -8.22 4.32 -234.33 -1.01 -9.24 16 17 C 0.02 0.43 8.49 60.07 0.51 0.94 16 18 C 0.09 1.09 2.34 -66.06 -0.15 0.94 16 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 20 C -0.12 -1.24 5.23 -25.61 -0.13 -1.37 16 21 C -0.12 -0.98 6.81 -25.51 -0.17 -1.15 16 22 C -0.16 -1.28 6.57 -24.97 -0.16 -1.45 16 23 C 0.10 1.13 2.94 -24.74 -0.07 1.05 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 O -0.56 -6.07 11.79 -35.23 -0.42 -6.49 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.65 7.22 -51.93 -0.38 0.28 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 30 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.05 0.83 7.38 -51.93 -0.38 0.44 16 35 H 0.10 1.31 6.05 -51.93 -0.31 1.00 16 36 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 1.84 5.82 -51.93 -0.30 1.54 16 38 H 0.07 1.12 6.23 -51.93 -0.32 0.80 16 39 H 0.08 0.96 8.01 -51.93 -0.42 0.54 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.38 2.40 9.12 45.56 0.42 2.81 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -33.96 353.82 -8.14 -42.11 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.03 Total: 1.13 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.38 Total: 2.90 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.71 Total: -48.73 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.34 Total: -19.87 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.96 -8.14 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352669479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.516 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds