Wall clock time and date at job start Tue Mar 31 2020 03:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47023 * 2 1 4 4 C 1.46503 * 119.99950 * 270.00288 * 3 2 1 5 5 C 1.50703 * 109.46881 * 270.00131 * 4 3 2 6 6 H 1.07997 * 120.00012 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99825 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00286 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99884 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47142 * 60.00063 * 9 7 5 11 11 H 1.48508 * 109.46996 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47153 * 299.99623 * 9 7 5 13 13 C 1.34771 * 120.00036 * 89.99977 * 3 2 1 14 14 O 1.21280 * 120.00309 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00043 * 0.02562 * 13 3 2 16 16 N 1.46892 * 109.47253 * 174.06461 * 15 13 3 17 17 C 1.48557 * 111.00381 * 298.94361 * 16 15 13 18 18 C 1.54382 * 104.59641 * 200.95944 * 17 16 15 19 19 H 1.09002 * 110.32347 * 264.95396 * 18 17 16 20 20 C 1.53007 * 110.32178 * 142.74802 * 18 17 16 21 21 O 1.42900 * 109.47173 * 69.36315 * 20 18 17 22 22 C 1.54260 * 105.05937 * 23.85269 * 18 17 16 23 23 H 1.09003 * 110.32131 * 241.10163 * 22 18 17 24 24 C 1.53000 * 110.40773 * 118.94135 * 22 18 17 25 25 C 1.48556 * 111.00235 * 183.52167 * 16 15 13 26 26 H 1.09008 * 109.47145 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47435 * 299.99532 * 1 2 3 28 28 H 1.08999 * 109.47201 * 60.00129 * 1 2 3 29 29 H 1.09001 * 109.46836 * 240.00017 * 2 1 3 30 30 H 1.09003 * 109.47136 * 120.00391 * 2 1 3 31 31 H 1.08996 * 109.47372 * 29.99760 * 4 3 2 32 32 H 1.08993 * 109.46902 * 150.00359 * 4 3 2 33 33 H 0.96998 * 120.00129 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.46916 * 54.06714 * 15 13 3 35 35 H 1.08998 * 109.47119 * 294.06637 * 15 13 3 36 36 H 1.09003 * 110.41020 * 319.74008 * 17 16 15 37 37 H 1.09005 * 110.41079 * 82.17687 * 17 16 15 38 38 H 1.08997 * 109.46770 * 189.36383 * 20 18 17 39 39 H 1.08996 * 109.47098 * 309.36538 * 20 18 17 40 40 H 0.96696 * 114.00435 * 179.97438 * 21 20 18 41 41 H 1.08999 * 109.47355 * 301.47864 * 24 22 18 42 42 H 1.09000 * 109.47552 * 61.48333 * 24 22 18 43 43 H 1.09001 * 109.46662 * 181.48556 * 24 22 18 44 44 H 1.09007 * 110.41238 * 40.26502 * 25 16 15 45 45 H 1.09005 * 110.41666 * 277.82215 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1492 2.3905 -2.8775 8 7 3.3492 3.1266 -3.6176 9 14 5.9137 2.0975 -3.4164 10 1 6.1415 0.6410 -3.5944 11 1 6.1611 2.7975 -4.7026 12 1 6.8408 2.6208 -2.3812 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1598 1.1672 15 6 1.9923 1.3059 2.4723 16 7 2.4432 2.1522 3.5851 17 6 3.9000 2.4269 3.4887 18 6 4.3166 2.8241 4.9212 19 1 4.3055 3.9085 5.0318 20 6 5.7061 2.2703 5.2433 21 8 6.6861 2.9604 4.4653 22 6 3.2572 2.1809 5.8396 23 1 2.7261 2.9495 6.4010 24 6 3.9149 1.1842 6.7962 25 6 2.2896 1.4492 4.8848 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5816 1.6878 -2.0284 32 1 2.0955 3.1410 -1.1384 33 1 3.6753 3.5171 -4.4435 34 1 2.5426 0.3651 2.4852 35 1 0.9262 1.1048 2.5776 36 1 4.4354 1.5321 3.1714 37 1 4.0870 3.2483 2.7968 38 1 5.9172 2.4128 6.3031 39 1 5.7372 1.2068 5.0064 40 1 7.5926 2.6606 4.6188 41 1 4.4312 0.4154 6.2215 42 1 4.6315 1.7071 7.4296 43 1 3.1503 0.7200 7.4192 44 1 2.5731 0.4013 4.7860 45 1 1.2641 1.5343 5.2442 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362094019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:11 Heat of formation + Delta-G solvation = -106.694429 kcal Electronic energy + Delta-G solvation = -23749.681396 eV Core-core repulsion = 20380.076091 eV Total energy + Delta-G solvation = -3369.605306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22256 -39.98800 -37.48767 -36.89309 -35.02963 -34.53353 -31.63381 -31.08053 -30.03531 -28.34649 -26.28969 -25.67408 -24.56932 -23.80747 -22.29274 -20.25331 -19.62628 -18.66054 -18.58646 -17.86857 -17.34912 -16.96011 -16.60243 -16.36048 -15.79372 -15.49826 -15.13267 -14.75776 -14.68134 -14.45183 -14.02630 -13.82595 -13.74371 -13.54289 -13.28790 -13.24772 -13.10475 -12.86249 -12.65554 -12.63290 -12.55109 -12.25432 -12.14373 -11.87402 -11.78612 -11.73815 -11.58939 -11.31076 -10.75861 -10.65920 -10.50281 -9.46237 -9.39971 -8.23588 -6.38772 1.33180 1.38512 1.45506 1.85138 2.23467 2.40000 3.02379 3.05537 3.29686 3.55233 3.62935 3.87434 4.03355 4.04668 4.21028 4.28398 4.34142 4.41685 4.44335 4.45822 4.51709 4.59651 4.64785 4.66388 4.77801 4.84295 4.93066 4.97940 5.00221 5.04335 5.18915 5.20861 5.24374 5.33422 5.38712 5.43921 5.56680 5.80180 5.86107 5.99020 6.05770 6.68914 6.82025 6.92696 7.27547 7.53193 8.83311 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.005024 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.910505 B = 5571.391241 C = 6904.938468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.542 4.542 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.258 1.258 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.493 3.507 14 O -0.582 6.582 15 C 0.042 3.958 16 N -0.518 5.518 17 C 0.052 3.948 18 C -0.091 4.091 19 H 0.064 0.936 20 C 0.084 3.916 21 O -0.602 6.602 22 C -0.081 4.081 23 H 0.088 0.912 24 C -0.145 4.145 25 C 0.035 3.965 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.022 0.978 32 H -0.008 1.008 33 H 0.267 0.733 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.030 0.970 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.395 0.605 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.791 -11.324 21.626 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.182 1.182 11 H -0.201 1.201 12 H -0.206 1.206 13 C 0.281 3.719 14 O -0.462 6.462 15 C -0.089 4.089 16 N -0.242 5.242 17 C -0.076 4.076 18 C -0.111 4.111 19 H 0.083 0.917 20 C 0.007 3.993 21 O -0.411 6.411 22 C -0.100 4.100 23 H 0.107 0.893 24 C -0.202 4.202 25 C -0.091 4.091 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.040 0.960 32 H 0.010 0.990 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.146 0.854 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.245 0.755 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.468 -9.857 21.185 23.412 hybrid contribution 1.722 -0.442 -1.027 2.053 sum 0.254 -10.299 20.158 22.638 Atomic orbital electron populations 1.22149 0.94392 1.03562 1.01694 1.21754 0.95474 0.81298 1.03756 1.48296 1.64238 1.15114 1.06112 1.18650 0.95230 0.91342 0.80462 1.21650 0.97853 1.32072 1.06502 0.93186 1.25860 1.02415 0.94422 0.96410 1.70048 1.37835 1.34131 1.14803 0.85491 0.78963 0.79145 0.77355 1.18213 1.20097 1.20618 1.21208 0.77507 0.86752 0.86432 1.90636 1.47154 1.20588 1.87798 1.22205 1.04190 0.94557 0.87914 1.65149 1.16299 1.40736 1.02005 1.22952 0.87724 0.99276 0.97674 1.21946 0.94667 1.00661 0.93805 0.91721 1.22520 0.86875 0.94872 0.95033 1.86534 1.20664 1.65271 1.68627 1.21856 0.94373 0.98378 0.95374 0.89335 1.21941 1.01317 0.98280 0.98641 1.23397 1.01427 0.96496 0.87824 0.88419 0.92073 0.94411 0.91045 0.88389 0.96012 0.98976 0.92382 0.90231 0.85379 0.95149 0.93576 0.90362 0.92694 0.75539 0.92228 0.91050 0.90641 0.91990 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.28 16 2 C 0.10 3.11 5.96 86.38 0.51 3.62 16 3 N -0.61 -26.90 2.46 -826.15 -2.03 -28.93 16 4 C 0.26 14.98 5.16 85.63 0.44 15.43 16 5 C -0.54 -32.57 9.39 25.60 0.24 -32.33 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16 9 Si 0.97 46.43 29.54 68.60 2.03 48.46 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 13 C 0.49 21.95 7.32 87.66 0.64 22.59 16 14 O -0.58 -32.67 14.00 -3.03 -0.04 -32.71 16 15 C 0.04 1.29 4.11 85.56 0.35 1.64 16 16 N -0.52 -16.13 5.18 -886.05 -4.59 -20.72 16 17 C 0.05 1.81 5.02 86.45 0.43 2.24 16 18 C -0.09 -2.38 3.33 -9.90 -0.03 -2.41 16 19 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 20 C 0.08 1.74 5.18 71.98 0.37 2.11 16 21 O -0.60 -15.57 13.55 -148.98 -2.02 -17.59 16 22 C -0.08 -1.47 3.65 -9.90 -0.04 -1.51 16 23 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 24 C -0.14 -1.65 7.92 71.98 0.57 -1.08 16 25 C 0.04 0.71 6.04 86.45 0.52 1.23 16 26 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.06 1.42 7.41 -2.39 -0.02 1.40 16 28 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 30 H 0.10 2.35 6.28 -2.39 -0.01 2.34 16 31 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 32 H -0.01 -0.52 7.42 -2.39 -0.02 -0.54 16 33 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 34 H 0.08 2.05 6.92 -2.39 -0.02 2.03 16 35 H 0.13 3.12 7.41 -2.39 -0.02 3.10 16 36 H 0.03 1.06 7.56 -2.39 -0.02 1.04 16 37 H 0.05 2.15 6.53 -2.38 -0.02 2.14 16 38 H 0.08 1.14 6.53 -2.39 -0.02 1.13 16 39 H 0.05 1.02 6.90 -2.39 -0.02 1.00 16 40 H 0.40 6.01 9.12 -74.06 -0.68 5.34 16 41 H 0.06 0.68 6.84 -2.39 -0.02 0.67 16 42 H 0.07 0.68 6.77 -2.39 -0.02 0.67 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 1.03 7.63 -2.38 -0.02 1.01 16 45 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -83.67 352.53 -0.86 -84.53 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.30 Total: 15.54 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 5.22 Total: 9.21 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -6.34 Total: -107.43 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -2.06 Total: -50.30 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -83.67 -0.86 -84.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362094019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.167 kcal (2) G-P(sol) polarization free energy of solvation -83.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds