Wall clock time and date at job start Tue Mar 31 2020 03:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.46584 * 2 1 4 4 C 1.46500 * 119.99632 * 269.99581 * 3 2 1 5 5 C 1.50704 * 109.47218 * 270.00210 * 4 3 2 6 6 H 1.07994 * 119.99837 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99741 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00190 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99751 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47048 * 60.00372 * 9 7 5 11 11 H 1.48502 * 109.46999 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47455 * 300.00116 * 9 7 5 13 13 C 1.34778 * 120.00096 * 90.00190 * 3 2 1 14 14 O 1.21277 * 119.99873 * 179.97438 * 13 3 2 15 15 C 1.50692 * 119.99881 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47125 * 180.02562 * 15 13 3 17 17 C 1.48536 * 110.99983 * 290.12936 * 16 15 13 18 18 C 1.54941 * 103.22404 * 200.27497 * 17 16 15 19 19 C 1.54595 * 102.92222 * 37.41718 * 18 17 16 20 20 H 1.09001 * 110.30880 * 97.05347 * 19 18 17 21 21 C 1.52999 * 110.31043 * 219.12649 * 19 18 17 22 22 O 1.42905 * 109.46728 * 292.20960 * 21 19 18 23 23 C 1.48124 * 110.95190 * 172.75710 * 16 15 13 24 24 H 1.09001 * 109.99589 * 26.56983 * 23 16 15 25 25 C 1.53002 * 109.95238 * 265.20437 * 23 16 15 26 26 H 1.08999 * 109.47300 * 60.00584 * 1 2 3 27 27 H 1.09008 * 109.46873 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47460 * 299.99600 * 1 2 3 29 29 H 1.08997 * 109.47460 * 240.00400 * 2 1 3 30 30 H 1.08999 * 109.47300 * 119.99415 * 2 1 3 31 31 H 1.09001 * 109.47306 * 30.00623 * 4 3 2 32 32 H 1.09002 * 109.46666 * 150.00372 * 4 3 2 33 33 H 0.96997 * 120.00068 * 180.02562 * 8 7 5 34 34 H 1.09008 * 109.47356 * 60.00303 * 15 13 3 35 35 H 1.08999 * 109.47453 * 300.00250 * 15 13 3 36 36 H 1.08995 * 110.66383 * 81.84212 * 17 16 15 37 37 H 1.09002 * 110.80867 * 318.78068 * 17 16 15 38 38 H 1.08995 * 110.72880 * 279.05750 * 18 17 16 39 39 H 1.09002 * 110.71880 * 155.77156 * 18 17 16 40 40 H 1.09000 * 109.47486 * 172.20898 * 21 19 18 41 41 H 1.09001 * 109.47362 * 52.20175 * 21 19 18 42 42 H 0.96696 * 114.00036 * 179.97438 * 22 21 19 43 43 H 1.09003 * 109.46922 * 302.52873 * 25 23 16 44 44 H 1.08999 * 109.46827 * 62.52948 * 25 23 16 45 45 H 1.08997 * 109.46990 * 182.53185 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3425 1.2304 -1.0962 7 6 4.1492 2.3906 -2.8775 8 7 3.3495 3.1273 -3.6172 9 14 5.9137 2.0977 -3.4163 10 1 6.1416 0.6412 -3.5942 11 1 6.1614 2.7986 -4.7019 12 1 6.8408 2.6211 -2.3811 13 6 2.2428 2.0167 1.1672 14 8 2.6474 3.1600 1.1672 15 6 1.9912 1.3065 2.4722 16 7 2.3089 2.2067 3.5888 17 6 3.7726 2.4410 3.6838 18 6 3.9596 2.9283 5.1427 19 6 2.9446 2.0663 5.9279 20 1 3.4434 1.2047 6.3717 21 6 2.2652 2.9030 7.0139 22 8 3.2225 3.2495 8.0168 23 6 1.9111 1.6061 4.8831 24 1 1.9185 0.5188 4.8074 25 6 0.5164 2.0952 5.2789 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.5816 1.6877 -2.0284 32 1 2.0953 3.1411 -1.1384 33 1 3.6755 3.5178 -4.4431 34 1 2.6212 0.4188 2.5302 35 1 0.9432 1.0126 2.5298 36 1 4.0856 3.2103 2.9781 37 1 4.3246 1.5166 3.5132 38 1 3.7155 3.9870 5.2300 39 1 4.9760 2.7361 5.4862 40 1 1.4584 2.3261 7.4657 41 1 1.8581 3.8119 6.5709 42 1 2.8609 3.7819 8.7384 43 1 0.5145 3.1840 5.3309 44 1 -0.2088 1.7657 4.5349 45 1 0.2502 1.6845 6.2528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488780319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:21 Heat of formation + Delta-G solvation = -104.908340 kcal Electronic energy + Delta-G solvation = -23637.115136 eV Core-core repulsion = 20267.587281 eV Total energy + Delta-G solvation = -3369.527855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.17862 -39.96047 -37.43498 -36.83853 -34.95159 -33.70949 -32.42668 -31.59194 -29.72430 -28.09399 -26.45697 -25.34398 -24.66903 -23.89213 -22.23809 -20.12220 -19.85272 -18.63997 -18.43570 -17.81183 -17.47855 -16.76796 -16.44067 -16.14105 -15.95252 -15.44124 -15.22709 -14.79894 -14.68012 -14.37216 -14.27265 -13.71601 -13.60692 -13.37212 -13.26240 -13.17983 -13.11500 -12.93809 -12.65608 -12.52328 -12.37246 -12.27709 -12.10917 -11.97085 -11.81190 -11.72849 -11.63567 -11.34827 -10.71799 -10.65085 -10.50048 -9.41547 -9.35782 -8.22721 -6.37964 1.34540 1.39201 1.46398 1.89076 2.23081 2.40463 3.02551 3.06425 3.26266 3.58838 3.68584 3.81942 4.08466 4.17759 4.20874 4.22960 4.33072 4.37477 4.45934 4.50270 4.52872 4.64085 4.66263 4.78221 4.80673 4.88677 4.94607 4.96857 5.00095 5.05727 5.15309 5.16721 5.22596 5.28952 5.39479 5.43711 5.57982 5.85000 5.90741 6.05952 6.07324 6.70372 6.84982 6.96882 7.28620 7.56230 8.84046 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.004118 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.738551 B = 6797.507718 C = 7685.933923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.266 3.734 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.496 3.504 14 O -0.581 6.581 15 C 0.044 3.956 16 N -0.514 5.514 17 C 0.036 3.964 18 C -0.104 4.104 19 C -0.091 4.091 20 H 0.088 0.912 21 C 0.087 3.913 22 O -0.595 6.595 23 C 0.068 3.932 24 H 0.074 0.926 25 C -0.139 4.139 26 H 0.037 0.963 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.020 0.980 32 H -0.007 1.007 33 H 0.267 0.733 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.396 0.604 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.276 -8.618 21.418 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.144 3.856 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.285 3.715 14 O -0.460 6.460 15 C -0.087 4.087 16 N -0.239 5.239 17 C -0.092 4.092 18 C -0.142 4.142 19 C -0.110 4.110 20 H 0.106 0.894 21 C 0.010 3.990 22 O -0.404 6.404 23 C -0.040 4.040 24 H 0.092 0.908 25 C -0.197 4.197 26 H 0.056 0.944 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.038 0.962 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.143 0.857 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.246 0.754 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.996 -7.796 20.742 22.955 hybrid contribution 1.005 0.019 -0.708 1.229 sum -4.991 -7.777 20.034 22.062 Atomic orbital electron populations 1.22149 0.94491 1.03505 1.01672 1.21733 0.95397 0.81379 1.03725 1.48298 1.64382 1.15086 1.06155 1.18633 0.95138 0.91352 0.80459 1.21684 0.97932 1.32008 1.06534 0.93007 1.25865 1.02402 0.94455 0.96432 1.70048 1.37853 1.34138 1.14818 0.85482 0.78985 0.79075 0.77354 1.18337 1.20245 1.20470 1.21165 0.77425 0.86695 0.86256 1.90624 1.47133 1.20453 1.87806 1.22169 1.04349 0.94013 0.88154 1.64504 1.14682 1.42600 1.02076 1.23184 0.88217 0.99773 0.98052 1.22400 0.99627 0.99750 0.92405 1.21975 0.95731 0.98733 0.94600 0.89381 1.22398 0.90468 0.97887 0.88252 1.86416 1.40392 1.75916 1.37632 1.22509 0.96204 0.97950 0.87324 0.90806 1.21898 0.94089 1.01763 1.01917 0.94407 0.88509 0.92091 0.91101 0.88412 0.96183 0.98902 0.92404 0.90289 0.85727 0.92699 0.93888 0.91906 0.90582 0.90894 0.93490 0.75417 0.92654 0.92587 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16 2 C 0.10 3.06 5.93 86.38 0.51 3.58 16 3 N -0.61 -26.35 2.46 -826.15 -2.03 -28.38 16 4 C 0.27 14.79 5.16 85.63 0.44 15.23 16 5 C -0.54 -32.10 9.39 25.60 0.24 -31.86 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 9 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 13 C 0.50 21.39 7.48 87.65 0.66 22.05 16 14 O -0.58 -31.45 14.42 -3.02 -0.04 -31.49 16 15 C 0.04 1.30 3.74 85.55 0.32 1.62 16 16 N -0.51 -15.19 4.60 -862.01 -3.96 -19.15 16 17 C 0.04 1.13 5.86 86.65 0.51 1.64 16 18 C -0.10 -2.66 6.48 31.80 0.21 -2.45 16 19 C -0.09 -1.81 3.26 -9.91 -0.03 -1.84 16 20 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 21 C 0.09 1.40 5.15 71.98 0.37 1.77 16 22 O -0.60 -10.10 13.52 -148.98 -2.01 -12.11 16 23 C 0.07 1.37 3.07 45.02 0.14 1.50 16 24 H 0.07 1.24 7.78 -2.39 -0.02 1.22 16 25 C -0.14 -2.29 8.35 71.98 0.60 -1.69 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.06 1.38 7.22 -2.39 -0.02 1.36 16 29 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 30 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 31 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 32 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 33 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.08 1.99 7.16 -2.38 -0.02 1.98 16 35 H 0.12 2.91 7.15 -2.39 -0.02 2.90 16 36 H 0.05 2.24 6.91 -2.39 -0.02 2.22 16 37 H 0.04 1.30 7.86 -2.39 -0.02 1.28 16 38 H 0.06 1.74 7.79 -2.39 -0.02 1.72 16 39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 0.82 6.50 -2.39 -0.02 0.80 16 41 H 0.05 0.82 6.91 -2.39 -0.02 0.81 16 42 H 0.40 3.03 9.12 -74.06 -0.68 2.35 16 43 H 0.05 1.06 6.82 -2.39 -0.02 1.04 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 0.94 6.70 -2.39 -0.02 0.92 16 Total: -1.00 -79.61 353.47 -0.28 -79.90 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.30 Total: 13.37 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 5.16 Total: 7.23 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -5.71 Total: -104.73 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -2.06 Total: -43.60 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -79.61 -0.28 -79.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488780319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.013 kcal (2) G-P(sol) polarization free energy of solvation -79.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds