Wall clock time and date at job start Tue Mar 31 2020 03:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46895 * 111.00299 * 2 1 4 4 C 1.53005 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46821 * 294.99787 * 4 3 2 6 6 C 1.53003 * 109.46845 * 175.00073 * 4 3 2 7 7 N 1.46494 * 109.47155 * 55.00013 * 4 3 2 8 8 C 1.34777 * 119.99896 * 204.99710 * 7 4 3 9 9 O 1.21589 * 120.00317 * 0.02562 * 8 7 4 10 10 N 1.34773 * 120.00034 * 179.97438 * 8 7 4 11 11 C 1.46505 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.53037 * 109.46042 * 275.02911 * 11 10 8 13 13 C 1.53192 * 109.31394 * 178.60349 * 12 11 10 14 14 N 1.46921 * 108.76832 * 54.65496 * 13 12 11 15 15 C 1.36936 * 120.63402 * 126.36330 * 14 13 12 16 16 H 1.08001 * 119.99445 * 331.86317 * 15 14 13 17 17 C 1.38809 * 120.00126 * 151.86731 * 15 14 13 18 18 N 1.31619 * 120.00026 * 343.05883 * 17 15 14 19 19 Si 1.86803 * 120.00043 * 163.06419 * 17 15 14 20 20 H 1.48497 * 109.47036 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46915 * 119.99711 * 19 17 15 22 22 H 1.48501 * 109.46792 * 239.99552 * 19 17 15 23 23 C 1.46930 * 118.73584 * 306.38708 * 14 13 12 24 24 C 1.53045 * 109.45883 * 154.97754 * 11 10 8 25 25 H 1.09006 * 109.47230 * 300.00260 * 1 2 3 26 26 H 1.09005 * 109.46930 * 59.99627 * 1 2 3 27 27 H 1.09003 * 109.47529 * 180.02562 * 1 2 3 28 28 H 1.00898 * 111.00003 * 123.95987 * 2 1 3 29 29 H 1.08996 * 109.47284 * 60.00251 * 3 2 1 30 30 H 1.08998 * 109.47278 * 299.99851 * 3 2 1 31 31 H 1.09001 * 109.47177 * 299.99495 * 6 4 3 32 32 H 1.09006 * 109.47088 * 179.97438 * 6 4 3 33 33 H 1.09002 * 109.47410 * 60.00280 * 6 4 3 34 34 H 0.97002 * 120.00387 * 25.00334 * 7 4 3 35 35 H 0.97002 * 120.00250 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.46071 * 35.00176 * 11 10 8 37 37 H 1.09006 * 109.49890 * 298.56637 * 12 11 10 38 38 H 1.09001 * 109.49622 * 58.66195 * 12 11 10 39 39 H 1.09008 * 109.59610 * 294.86763 * 13 12 11 40 40 H 1.09004 * 109.70180 * 174.50850 * 13 12 11 41 41 H 0.96998 * 119.99936 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.58783 * 293.81595 * 23 14 13 43 43 H 1.09006 * 109.70112 * 173.46235 * 23 14 13 44 44 H 1.09004 * 109.49193 * 301.33166 * 24 11 10 45 45 H 1.08998 * 109.49941 * 61.43438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3305 -0.0006 5 1 3.8769 0.8865 0.9306 6 6 4.0730 2.7534 -0.1264 7 7 3.9914 0.5257 -1.1323 8 6 5.1979 -0.0730 -1.0816 9 8 5.8989 0.0545 -0.0964 10 7 5.6269 -0.8138 -2.1225 11 6 6.9381 -1.4650 -2.0671 12 6 8.0175 -0.4765 -2.5140 13 6 9.3905 -1.1496 -2.4215 14 7 9.3581 -2.3979 -3.1957 15 6 10.2926 -2.6414 -4.1666 16 1 10.7548 -1.8173 -4.6898 17 6 10.6457 -3.9471 -4.4782 18 7 10.3545 -4.9241 -3.6458 19 14 11.5344 -4.3176 -6.0790 20 1 11.7426 -3.0555 -6.8332 21 1 12.8495 -4.9403 -5.7824 22 1 10.7170 -5.2518 -6.8941 23 6 8.3035 -3.3799 -2.9087 24 6 6.9427 -2.6817 -2.9955 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8305 -0.5262 0.7813 29 1 1.6460 1.8947 0.8900 30 1 1.6460 1.8947 -0.8900 31 1 3.7211 3.1974 -1.0576 32 1 5.1627 2.7244 -0.1264 33 1 3.7260 3.3522 0.7157 34 1 3.4321 0.4237 -1.9183 35 1 5.0675 -0.9158 -2.9084 36 1 7.1408 -1.7868 -1.0457 37 1 7.8294 -0.1734 -3.5440 38 1 7.9981 0.4004 -1.8669 39 1 9.6193 -1.3720 -1.3792 40 1 10.1532 -0.4863 -2.8295 41 1 10.6016 -5.8365 -3.8634 42 1 8.4436 -3.7841 -1.9062 43 1 8.3463 -4.1888 -3.6382 44 1 6.1582 -3.3745 -2.6911 45 1 6.7648 -2.3576 -4.0209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595266171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:54 Heat of formation + Delta-G solvation = -14.312636 kcal Electronic energy + Delta-G solvation = -23090.302456 eV Core-core repulsion = 19756.995876 eV Total energy + Delta-G solvation = -3333.306580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.95087 -37.84850 -36.84536 -34.50923 -34.13250 -32.20240 -30.84856 -29.89866 -28.96599 -27.26042 -24.94538 -23.75927 -22.45203 -22.07326 -21.17413 -20.40442 -19.34889 -18.03360 -16.97267 -16.58013 -15.58173 -15.26904 -14.89131 -14.85787 -14.54780 -14.30522 -13.93535 -13.57850 -13.47440 -13.14578 -12.94249 -12.74425 -12.52282 -12.42022 -12.28241 -12.13720 -11.73316 -11.38446 -11.08141 -11.04475 -10.76711 -10.69392 -10.40604 -10.19652 -9.97222 -9.88660 -9.67534 -9.46028 -9.00588 -8.85225 -8.50185 -8.35497 -6.63290 -5.75468 -3.17356 2.94264 3.39411 3.47285 3.49733 3.53009 3.83150 4.49253 4.52418 4.53038 4.85540 5.02167 5.06495 5.20215 5.22875 5.36582 5.39715 5.48081 5.51312 5.53538 5.58656 5.69948 5.84063 5.99355 6.05188 6.16470 6.37289 6.46218 6.52931 6.59537 6.64869 6.68286 6.70935 6.87647 6.95644 7.03582 7.07644 7.27577 7.38502 7.67963 7.83638 8.33322 8.49054 8.93278 9.25208 9.88657 10.46034 11.33451 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.035191 B = 0.003088 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.477656 B = 9066.079231 C = 9477.447970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.691 5.691 3 C 0.049 3.951 4 C 0.164 3.836 5 H 0.084 0.916 6 C -0.163 4.163 7 N -0.734 5.734 8 C 0.703 3.297 9 O -0.597 6.597 10 N -0.740 5.740 11 C 0.170 3.830 12 C -0.139 4.139 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.250 4.250 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.175 3.825 24 C -0.146 4.146 25 H 0.020 0.980 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.345 0.655 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.396 0.604 35 H 0.390 0.610 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.253 0.747 42 H 0.020 0.980 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.558 11.732 5.361 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C -0.081 4.081 4 C 0.057 3.943 5 H 0.103 0.897 6 C -0.223 4.223 7 N -0.390 5.390 8 C 0.403 3.597 9 O -0.476 6.476 10 N -0.393 5.393 11 C 0.066 3.934 12 C -0.179 4.179 13 C 0.021 3.979 14 N -0.316 5.316 15 C -0.379 4.379 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.048 3.952 24 C -0.186 4.186 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.163 0.837 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.230 0.770 35 H 0.223 0.777 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.797 11.596 5.580 22.780 hybrid contribution -0.378 -0.053 -0.632 0.739 sum -19.175 11.543 4.948 22.922 Atomic orbital electron populations 1.22198 0.87723 1.02025 1.00256 1.60325 1.07589 1.13721 1.50582 1.22347 0.94174 0.90185 1.01415 1.20700 0.91740 0.91227 0.90612 0.89747 1.22180 1.02687 0.95742 1.01647 1.44976 1.18462 1.54733 1.20799 1.16022 0.81414 0.78668 0.83618 1.90900 1.56673 1.67073 1.32931 1.45513 1.21216 1.53948 1.18612 1.20862 0.79818 0.92161 1.00563 1.22383 0.97197 0.97975 1.00360 1.20878 0.93377 0.88938 0.94739 1.44103 1.30116 1.16840 1.40546 1.19235 1.16518 0.91719 1.10465 0.91647 1.25052 0.99362 0.96785 0.98572 1.70039 1.50679 0.99735 1.34338 0.86233 0.79011 0.77960 0.83641 1.20292 1.21759 1.21611 1.20732 0.82663 0.91863 0.99902 1.22536 1.01496 0.96106 0.98454 0.96146 0.91739 0.91327 0.83707 0.93821 0.90474 0.92550 0.91409 0.92001 0.77017 0.77692 0.90210 0.92552 0.92771 0.96208 0.92684 0.93697 0.96143 0.89115 0.92792 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.70 60.06 0.64 0.81 16 2 N -0.69 -5.33 6.58 -121.13 -0.80 -6.12 16 3 C 0.05 0.35 5.24 -3.82 -0.02 0.33 16 4 C 0.16 1.58 2.81 -67.93 -0.19 1.39 16 5 H 0.08 0.99 7.58 -51.93 -0.39 0.60 16 6 C -0.16 -1.50 9.48 37.16 0.35 -1.14 16 7 N -0.73 -8.15 4.81 -58.68 -0.28 -8.43 16 8 C 0.70 10.82 8.50 -86.92 -0.74 10.08 16 9 O -0.60 -11.67 15.67 5.29 0.08 -11.59 16 10 N -0.74 -10.96 5.08 -58.63 -0.30 -11.26 16 11 C 0.17 3.09 2.42 -67.89 -0.16 2.93 16 12 C -0.14 -2.65 5.65 -26.61 -0.15 -2.80 16 13 C 0.15 3.27 6.52 -3.71 -0.02 3.25 16 14 N -0.59 -15.11 2.99 -172.31 -0.52 -15.63 16 15 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 16 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 17 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 18 N -0.90 -26.35 11.19 55.49 0.62 -25.73 16 19 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.17 4.19 5.30 -3.71 -0.02 4.17 16 24 C -0.15 -2.75 5.55 -26.61 -0.15 -2.90 16 25 H 0.02 0.11 8.14 -51.93 -0.42 -0.31 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.35 2.76 8.82 -39.29 -0.35 2.41 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.40 3.65 8.62 -40.82 -0.35 3.30 16 35 H 0.39 4.74 8.62 -40.82 -0.35 4.39 16 36 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 40 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -31.99 359.28 -9.53 -41.52 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.03 Total: 6.12 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -0.69 Total: 8.99 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -1.27 Total: -67.17 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.99 -9.53 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595266171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.205 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds