Wall clock time and date at job start Tue Mar 31 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99935 * 2 1 4 4 C 1.52998 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.09003 * 108.98008 * 53.94454 * 4 3 2 6 6 C 1.53816 * 109.05293 * 295.00400 * 4 3 2 7 7 C 1.54176 * 111.96973 * 198.49080 * 6 4 3 8 8 C 1.50753 * 112.61056 * 318.49132 * 7 6 4 9 9 C 1.54425 * 109.03167 * 93.01340 * 8 7 6 10 10 N 1.39775 * 111.76935 * 282.59457 * 9 8 7 11 11 C 1.46910 * 110.99768 * 189.12270 * 10 9 8 12 12 C 1.50700 * 109.46812 * 66.04741 * 11 10 9 13 13 O 1.21286 * 120.00120 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00000 * 179.97438 * 12 11 10 15 15 C 1.46491 * 120.00091 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46957 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.47629 * 114.76178 * 62.27488 * 10 9 8 25 25 H 1.08996 * 109.47002 * 299.99817 * 1 2 3 26 26 H 1.09000 * 109.46821 * 60.00132 * 1 2 3 27 27 H 1.09000 * 109.46463 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46780 * 60.00668 * 3 2 1 29 29 H 1.08993 * 109.47434 * 300.00156 * 3 2 1 30 30 H 1.08998 * 108.98219 * 77.84770 * 6 4 3 31 31 H 1.09001 * 108.98295 * 319.13100 * 6 4 3 32 32 H 1.08997 * 108.85609 * 197.68351 * 7 6 4 33 33 H 1.09001 * 108.85000 * 79.29384 * 7 6 4 34 34 H 1.09006 * 109.54259 * 333.15161 * 8 7 6 35 35 H 1.09002 * 109.54373 * 212.88369 * 8 7 6 36 36 H 1.08997 * 109.02437 * 162.00056 * 9 8 7 37 37 H 1.09005 * 108.95756 * 43.13749 * 9 8 7 38 38 H 1.08998 * 109.47017 * 306.04804 * 11 10 9 39 39 H 1.09002 * 109.46670 * 186.04214 * 11 10 9 40 40 H 0.97003 * 119.99349 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.47166 * 60.00164 * 15 14 12 42 42 H 1.08994 * 109.47507 * 299.99870 * 15 14 12 43 43 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.74710 * 36.83560 * 24 10 9 45 45 H 1.08998 * 109.74941 * 157.56269 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8413 0.5517 -0.8324 6 6 3.9870 0.5326 1.3186 7 6 5.4813 0.7831 1.6038 8 6 6.3371 0.6499 0.3698 9 6 6.5012 2.0404 -0.2816 10 7 5.3591 2.4172 -0.9939 11 6 5.6067 3.6330 -1.7807 12 6 6.6192 3.3372 -2.8569 13 8 7.0888 2.2235 -2.9583 14 7 7.0030 4.3103 -3.7068 15 6 7.9877 4.0230 -4.7527 16 6 8.2406 5.2697 -5.5606 17 1 7.7202 6.1847 -5.3189 18 6 9.1411 5.2439 -6.6045 19 7 9.7751 4.1298 -6.8986 20 14 9.4603 6.7912 -7.6011 21 1 10.5750 7.5553 -6.9855 22 1 9.8245 6.4181 -8.9915 23 1 8.2353 7.6304 -7.6185 24 6 4.1380 2.5560 -0.1760 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6887 1.8464 -0.8899 30 1 3.8122 -0.5417 1.2607 31 1 3.3961 0.9427 2.1377 32 1 5.8230 0.0644 2.3486 33 1 5.5991 1.7887 2.0073 34 1 5.8571 -0.0287 -0.3353 35 1 7.3163 0.2585 0.6457 36 1 7.3523 2.0158 -0.9620 37 1 6.6920 2.7769 0.4991 38 1 5.9894 4.4169 -1.1272 39 1 4.6752 3.9647 -2.2394 40 1 6.6271 5.2009 -3.6259 41 1 7.6056 3.2385 -5.4059 42 1 8.9192 3.6919 -4.2937 43 1 10.4083 4.1116 -7.6332 44 1 4.3925 2.9746 0.7977 45 1 3.4269 3.2079 -0.6834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767941970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:18 Heat of formation + Delta-G solvation = -85.942299 kcal Electronic energy + Delta-G solvation = -22959.655456 eV Core-core repulsion = 19590.950030 eV Total energy + Delta-G solvation = -3368.705426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 6.98 seconds Orbital eigenvalues (eV) -40.03858 -38.55084 -37.57502 -34.61342 -33.98413 -32.88198 -32.29364 -28.87151 -27.85826 -26.86348 -25.69565 -25.09529 -23.23669 -22.19264 -20.79117 -19.69048 -19.20879 -17.15074 -16.70293 -16.22226 -16.10713 -15.72326 -15.28999 -15.12150 -14.92760 -14.59188 -14.34525 -14.11282 -13.86888 -13.39683 -12.84937 -12.67863 -12.63122 -12.30375 -12.14581 -11.94365 -11.69148 -11.59059 -11.39746 -11.01016 -10.97912 -10.88432 -10.83390 -10.54414 -10.33354 -10.25965 -10.22808 -9.82478 -9.38229 -8.95818 -8.71680 -8.03308 -7.81007 -6.15687 -4.22516 3.24385 3.30424 3.32798 3.42189 3.43569 3.86897 4.29020 4.46748 4.61572 4.68860 4.87728 5.01215 5.05788 5.13076 5.14525 5.20295 5.23326 5.26386 5.34750 5.40218 5.41544 5.48197 5.53337 5.55862 5.67000 5.70963 5.85850 5.88230 5.96407 6.14451 6.20740 6.28134 6.44054 6.52344 6.97364 7.13639 7.35820 7.48107 7.54127 7.56109 7.69499 7.98794 8.66369 8.80900 9.15847 9.44335 10.94522 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.002974 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.003039 B = 9411.187037 C = 9963.326951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.067 3.933 4 C -0.086 4.086 5 H 0.097 0.903 6 C -0.104 4.104 7 C -0.121 4.121 8 C -0.115 4.115 9 C 0.066 3.934 10 N -0.532 5.532 11 C 0.041 3.959 12 C 0.496 3.504 13 O -0.537 6.537 14 N -0.715 5.715 15 C 0.251 3.749 16 C -0.543 4.543 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.073 3.927 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.009 0.991 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.389 0.611 41 H 0.027 0.973 42 H 0.025 0.975 43 H 0.266 0.734 44 H 0.045 0.955 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.736 -3.091 17.386 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.010 4.010 4 C -0.105 4.105 5 H 0.115 0.885 6 C -0.142 4.142 7 C -0.159 4.159 8 C -0.153 4.153 9 C -0.063 4.063 10 N -0.256 5.256 11 C -0.090 4.090 12 C 0.280 3.720 13 O -0.415 6.415 14 N -0.365 5.365 15 C 0.131 3.869 16 C -0.581 4.581 17 H 0.080 0.920 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.054 4.054 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.221 0.779 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.195 -4.509 16.874 23.150 hybrid contribution -0.060 2.158 -0.025 2.159 sum -15.254 -2.351 16.848 22.849 Atomic orbital electron populations 1.22720 0.81400 1.02609 0.99788 1.87905 1.19311 1.28119 1.95356 1.22731 0.93923 0.84524 0.99807 1.21018 0.91801 0.97683 0.99996 0.88495 1.21869 0.95216 1.01039 0.96031 1.21475 0.94968 1.01245 0.98164 1.21421 0.99560 0.97527 0.96750 1.21187 0.93727 0.95130 0.96277 1.58264 1.04725 1.33555 1.29062 1.22006 0.99930 0.91575 0.95468 1.20361 0.83004 0.85572 0.83017 1.90632 1.56384 1.22204 1.72253 1.46458 1.44550 1.12248 1.33218 1.19070 0.86544 0.96872 0.84443 1.21234 1.25321 0.96131 1.15447 0.91952 1.24958 0.95423 0.96617 0.97059 1.69979 1.26699 1.26138 1.29454 0.86421 0.78611 0.82606 0.79295 1.20496 1.21004 1.19762 1.21756 0.91583 0.96117 0.95975 0.94341 0.94128 0.89777 0.93668 0.93174 0.91693 0.92790 0.92491 0.92764 0.90478 0.91656 0.88460 0.97263 0.92513 0.88457 0.77877 0.95550 0.95658 0.92456 0.93714 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.25 10.46 -35.23 -0.37 -4.62 16 3 C 0.07 0.64 5.09 37.16 0.19 0.83 16 4 C -0.09 -0.94 1.98 -91.29 -0.18 -1.12 16 5 H 0.10 1.32 7.26 -51.93 -0.38 0.95 16 6 C -0.10 -1.06 5.07 -25.69 -0.13 -1.19 16 7 C -0.12 -1.26 5.31 -27.24 -0.14 -1.41 16 8 C -0.11 -1.46 5.65 -27.11 -0.15 -1.61 16 9 C 0.07 0.95 4.60 -6.75 -0.03 0.92 16 10 N -0.53 -7.51 3.71 -241.45 -0.90 -8.40 16 11 C 0.04 0.58 5.45 -4.97 -0.03 0.55 16 12 C 0.50 9.80 7.44 -10.98 -0.08 9.72 16 13 O -0.54 -12.79 14.35 5.55 0.08 -12.71 16 14 N -0.72 -14.92 5.55 -61.48 -0.34 -15.26 16 15 C 0.25 6.67 5.43 -5.20 -0.03 6.64 16 16 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 20 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.07 0.79 4.89 -4.52 -0.02 0.76 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.37 8.01 -51.93 -0.42 -0.05 16 29 H 0.05 0.46 7.91 -51.93 -0.41 0.05 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.50 7.88 -51.93 -0.41 0.09 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.56 6.57 -51.93 -0.34 0.22 16 34 H 0.08 1.09 7.11 -51.93 -0.37 0.72 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.10 1.75 5.53 -51.93 -0.29 1.46 16 37 H 0.01 0.13 7.54 -51.93 -0.39 -0.26 16 38 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.10 1.17 7.66 -51.93 -0.40 0.77 16 40 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.04 0.45 6.66 -51.93 -0.35 0.11 16 45 H 0.07 0.69 6.96 -51.93 -0.36 0.33 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -32.17 351.42 -8.21 -40.39 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.78 Total: 2.85 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 0.09 Total: 2.08 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.50 Total: -49.11 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.29 Total: -17.32 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.17 -8.21 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767941970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.555 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.98 seconds