Wall clock time and date at job start Tue Mar 31 2020 03:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99935 * 2 1 4 4 C 1.52998 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.09003 * 108.98008 * 53.94454 * 4 3 2 6 6 C 1.53816 * 109.05293 * 295.00400 * 4 3 2 7 7 C 1.54176 * 111.96973 * 198.49080 * 6 4 3 8 8 C 1.50753 * 112.61056 * 318.49132 * 7 6 4 9 9 C 1.54425 * 109.03167 * 93.01340 * 8 7 6 10 10 N 1.39775 * 111.76935 * 282.59457 * 9 8 7 11 11 C 1.46910 * 110.99768 * 189.12270 * 10 9 8 12 12 C 1.50700 * 109.46812 * 66.04741 * 11 10 9 13 13 O 1.21286 * 120.00120 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00000 * 179.97438 * 12 11 10 15 15 C 1.46491 * 120.00091 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46957 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.47629 * 114.76178 * 62.27488 * 10 9 8 25 25 H 1.08996 * 109.47002 * 299.99817 * 1 2 3 26 26 H 1.09000 * 109.46821 * 60.00132 * 1 2 3 27 27 H 1.09000 * 109.46463 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46780 * 60.00668 * 3 2 1 29 29 H 1.08993 * 109.47434 * 300.00156 * 3 2 1 30 30 H 1.08998 * 108.98219 * 77.84770 * 6 4 3 31 31 H 1.09001 * 108.98295 * 319.13100 * 6 4 3 32 32 H 1.08997 * 108.85609 * 197.68351 * 7 6 4 33 33 H 1.09001 * 108.85000 * 79.29384 * 7 6 4 34 34 H 1.09006 * 109.54259 * 333.15161 * 8 7 6 35 35 H 1.09002 * 109.54373 * 212.88369 * 8 7 6 36 36 H 1.08997 * 109.02437 * 162.00056 * 9 8 7 37 37 H 1.09005 * 108.95756 * 43.13749 * 9 8 7 38 38 H 1.08998 * 109.47017 * 306.04804 * 11 10 9 39 39 H 1.09002 * 109.46670 * 186.04214 * 11 10 9 40 40 H 0.97003 * 119.99349 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.47166 * 60.00164 * 15 14 12 42 42 H 1.08994 * 109.47507 * 299.99870 * 15 14 12 43 43 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.74710 * 36.83560 * 24 10 9 45 45 H 1.08998 * 109.74941 * 157.56269 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8413 0.5517 -0.8324 6 6 3.9870 0.5326 1.3186 7 6 5.4813 0.7831 1.6038 8 6 6.3371 0.6499 0.3698 9 6 6.5012 2.0404 -0.2816 10 7 5.3591 2.4172 -0.9939 11 6 5.6067 3.6330 -1.7807 12 6 6.6192 3.3372 -2.8569 13 8 7.0888 2.2235 -2.9583 14 7 7.0030 4.3103 -3.7068 15 6 7.9877 4.0230 -4.7527 16 6 8.2406 5.2697 -5.5606 17 1 7.7202 6.1847 -5.3189 18 6 9.1411 5.2439 -6.6045 19 7 9.7751 4.1298 -6.8986 20 14 9.4603 6.7912 -7.6011 21 1 10.5750 7.5553 -6.9855 22 1 9.8245 6.4181 -8.9915 23 1 8.2353 7.6304 -7.6185 24 6 4.1380 2.5560 -0.1760 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6887 1.8464 -0.8899 30 1 3.8122 -0.5417 1.2607 31 1 3.3961 0.9427 2.1377 32 1 5.8230 0.0644 2.3486 33 1 5.5991 1.7887 2.0073 34 1 5.8571 -0.0287 -0.3353 35 1 7.3163 0.2585 0.6457 36 1 7.3523 2.0158 -0.9620 37 1 6.6920 2.7769 0.4991 38 1 5.9894 4.4169 -1.1272 39 1 4.6752 3.9647 -2.2394 40 1 6.6271 5.2009 -3.6259 41 1 7.6056 3.2385 -5.4059 42 1 8.9192 3.6919 -4.2937 43 1 10.4083 4.1116 -7.6332 44 1 4.3925 2.9746 0.7977 45 1 3.4269 3.2079 -0.6834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767941970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:12 Heat of formation + Delta-G solvation = -109.804069 kcal Electronic energy + Delta-G solvation = -22960.690180 eV Core-core repulsion = 19590.950030 eV Total energy + Delta-G solvation = -3369.740150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -41.22110 -39.84491 -38.50178 -36.16523 -35.39345 -34.33933 -33.76835 -30.36002 -28.82973 -28.26777 -26.59182 -26.09310 -24.69853 -23.61864 -21.88105 -21.29662 -20.14406 -18.89328 -17.76037 -17.40113 -17.10464 -16.96062 -16.71694 -16.57499 -16.03451 -15.80370 -15.52763 -15.32830 -15.17308 -14.48050 -14.32403 -14.06500 -13.89754 -13.55163 -13.42658 -13.15740 -12.90939 -12.82400 -12.70520 -12.51466 -12.24277 -12.21513 -11.96745 -11.78706 -11.50059 -11.44389 -11.21512 -11.13985 -10.79138 -10.58122 -10.51590 -9.77418 -9.07413 -8.28606 -6.45291 1.43174 1.45751 1.56998 1.83991 2.27477 2.45417 2.88273 3.06237 3.22598 3.76165 3.85466 4.00151 4.04173 4.18722 4.21748 4.33516 4.39415 4.42509 4.49821 4.52831 4.56741 4.62661 4.68326 4.70077 4.76703 4.88240 4.90678 4.99472 5.09330 5.13124 5.20955 5.25887 5.28671 5.33539 5.47830 5.51310 5.58086 5.73397 5.86409 6.12689 6.32420 6.51437 6.66569 6.99080 7.24632 7.57734 8.83684 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.002974 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.003039 B = 9411.187037 C = 9963.326951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.069 3.931 4 C -0.084 4.084 5 H 0.060 0.940 6 C -0.099 4.099 7 C -0.114 4.114 8 C -0.111 4.111 9 C 0.071 3.929 10 N -0.555 5.555 11 C 0.055 3.945 12 C 0.491 3.509 13 O -0.585 6.585 14 N -0.710 5.710 15 C 0.269 3.731 16 C -0.555 4.555 17 H 0.085 0.915 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.985 3.015 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.254 1.254 24 C 0.077 3.923 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.025 0.975 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.408 0.592 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.268 0.732 44 H 0.062 0.938 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.896 -0.426 18.948 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.008 4.008 4 C -0.103 4.103 5 H 0.079 0.921 6 C -0.137 4.137 7 C -0.152 4.152 8 C -0.149 4.149 9 C -0.058 4.058 10 N -0.279 5.279 11 C -0.075 4.075 12 C 0.277 3.723 13 O -0.465 6.465 14 N -0.361 5.361 15 C 0.146 3.854 16 C -0.592 4.592 17 H 0.103 0.897 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.808 3.192 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.178 1.178 24 C -0.049 4.049 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.105 0.895 39 H 0.148 0.852 40 H 0.244 0.756 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.405 -1.817 18.477 25.449 hybrid contribution 0.596 1.212 -0.487 1.435 sum -16.809 -0.605 17.990 24.628 Atomic orbital electron populations 1.22885 0.79825 1.03505 1.00776 1.87868 1.21147 1.29039 1.95577 1.22734 0.92679 0.84347 1.01020 1.20953 0.93131 0.97247 0.98966 0.92103 1.21828 0.95127 1.00412 0.96305 1.21405 0.94696 1.02203 0.96877 1.21376 0.99998 0.96170 0.97386 1.21032 0.92684 0.96458 0.95633 1.58167 1.05624 1.33941 1.30203 1.21958 0.99211 0.92351 0.93970 1.21502 0.83070 0.84348 0.83329 1.90621 1.58109 1.24325 1.73475 1.46186 1.43811 1.13736 1.32387 1.18472 0.85977 0.95957 0.84990 1.21637 1.25484 0.96671 1.15449 0.89703 1.26097 0.94943 1.00342 0.98395 1.70151 1.27593 1.29057 1.30318 0.85148 0.79183 0.77870 0.76959 1.19603 1.21062 1.17767 1.21825 0.90154 0.96400 0.96489 0.92791 0.93617 0.89091 0.91475 0.92777 0.92899 0.90880 0.91356 0.91702 0.92760 0.91688 0.92874 0.95708 0.89548 0.85241 0.75628 0.99822 0.99782 0.92300 0.91955 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.55 10.46 -148.98 -1.56 -10.11 16 3 C 0.07 1.16 5.09 71.98 0.37 1.53 16 4 C -0.08 -1.70 1.98 -11.23 -0.02 -1.72 16 5 H 0.06 1.69 7.26 -2.39 -0.02 1.68 16 6 C -0.10 -1.84 5.07 31.27 0.16 -1.68 16 7 C -0.11 -2.19 5.31 30.26 0.16 -2.03 16 8 C -0.11 -2.87 5.65 30.35 0.17 -2.70 16 9 C 0.07 2.06 4.60 88.07 0.40 2.47 16 10 N -0.55 -15.01 3.71 -917.80 -3.40 -18.42 16 11 C 0.06 1.45 5.45 85.56 0.47 1.92 16 12 C 0.49 19.67 7.44 87.66 0.65 20.33 16 13 O -0.58 -29.50 14.35 -3.05 -0.04 -29.55 16 14 N -0.71 -29.94 5.55 -466.80 -2.59 -32.53 16 15 C 0.27 14.96 5.43 85.64 0.46 15.42 16 16 C -0.55 -30.30 9.28 25.60 0.24 -30.06 16 17 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 18 C 0.00 0.09 5.46 84.66 0.46 0.55 16 19 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 20 Si 0.99 42.43 29.54 68.60 2.03 44.46 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 24 C 0.08 1.44 4.89 85.46 0.42 1.86 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 0.84 8.01 -2.39 -0.02 0.82 16 29 H 0.05 0.85 7.91 -2.39 -0.02 0.84 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.10 7.88 -2.39 -0.02 1.08 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.13 6.57 -2.39 -0.02 1.12 16 34 H 0.05 1.63 7.11 -2.38 -0.02 1.61 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.05 2.01 5.53 -2.39 -0.01 2.00 16 37 H 0.03 0.63 7.54 -2.38 -0.02 0.61 16 38 H 0.09 1.83 8.10 -2.39 -0.02 1.81 16 39 H 0.13 2.62 7.66 -2.39 -0.02 2.60 16 40 H 0.41 13.88 8.32 -92.71 -0.77 13.11 16 41 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 42 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 44 H 0.06 0.99 6.66 -2.38 -0.02 0.98 16 45 H 0.09 1.38 6.96 -2.39 -0.02 1.36 16 Total: -1.00 -74.73 351.42 0.10 -74.63 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.19 Total: 20.71 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.19 Total: 7.48 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -5.71 Total: -107.62 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.60 Total: -39.66 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -74.73 0.10 -74.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767941970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.172 kcal (2) G-P(sol) polarization free energy of solvation -74.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds