Wall clock time and date at job start Tue Mar 31 2020 03:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46748 * 2 1 4 4 H 1.09000 * 109.46851 * 304.99562 * 3 2 1 5 5 N 1.46895 * 109.47607 * 65.00043 * 3 2 1 6 6 C 1.53004 * 109.46771 * 185.00059 * 3 2 1 7 7 N 1.46498 * 109.46870 * 184.99682 * 6 3 2 8 8 C 1.34774 * 120.00091 * 179.97438 * 7 6 3 9 9 O 1.21592 * 120.00067 * 354.91805 * 8 7 6 10 10 N 1.34780 * 120.00375 * 174.91899 * 8 7 6 11 11 C 1.47083 * 120.88219 * 184.71529 * 10 8 7 12 12 C 1.53698 * 108.27428 * 128.75613 * 11 10 8 13 13 N 1.46902 * 109.25551 * 54.07895 * 12 11 10 14 14 C 1.46900 * 110.99822 * 172.60535 * 13 12 11 15 15 C 1.50699 * 109.47197 * 294.30609 * 14 13 12 16 16 H 1.08002 * 120.00469 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99971 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46946 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46976 * 119.99447 * 19 17 15 22 22 H 1.48492 * 109.47298 * 239.99746 * 19 17 15 23 23 C 1.46893 * 111.27526 * 296.75731 * 13 12 11 24 24 C 1.47083 * 120.87776 * 4.99715 * 10 8 7 25 25 H 1.08994 * 109.47117 * 60.00524 * 1 2 3 26 26 H 1.09005 * 109.47202 * 299.99751 * 1 2 3 27 27 H 1.09010 * 109.47002 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47188 * 119.99973 * 2 1 3 29 29 H 1.08994 * 109.47221 * 239.99739 * 2 1 3 30 30 H 1.00903 * 110.99916 * 296.04896 * 5 3 2 31 31 H 1.00904 * 110.99719 * 59.99738 * 5 3 2 32 32 H 1.08997 * 109.47461 * 304.99549 * 6 3 2 33 33 H 1.08997 * 109.47348 * 65.00119 * 6 3 2 34 34 H 0.97001 * 120.00440 * 359.97438 * 7 6 3 35 35 H 1.08993 * 109.62682 * 248.52213 * 11 10 8 36 36 H 1.08994 * 109.62745 * 9.10596 * 11 10 8 37 37 H 1.09006 * 109.64823 * 294.08036 * 12 11 10 38 38 H 1.08994 * 109.41804 * 173.94834 * 12 11 10 39 39 H 1.09001 * 109.46920 * 54.30418 * 14 13 12 40 40 H 1.09001 * 109.47324 * 174.30898 * 14 13 12 41 41 H 0.97002 * 119.99791 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.49356 * 303.14692 * 23 13 12 43 43 H 1.08992 * 109.49653 * 183.06375 * 23 13 12 44 44 H 1.08995 * 109.62622 * 350.89660 * 24 10 8 45 45 H 1.08998 * 109.62840 * 111.47716 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 7 1.6513 2.0994 1.2551 6 6 3.5648 1.4444 -0.1257 7 7 4.0629 2.8169 -0.0061 8 6 5.3855 3.0631 -0.0859 9 8 6.1723 2.1393 -0.1645 10 7 5.8363 4.3333 -0.0787 11 6 7.2647 4.6285 -0.2682 12 6 7.3957 5.6828 -1.3788 13 7 6.5607 6.8445 -1.0451 14 6 6.7904 7.9464 -1.9889 15 6 8.2011 8.4536 -1.8355 16 1 8.8614 8.0022 -1.1097 17 6 8.6491 9.4939 -2.6217 18 7 7.8454 10.0433 -3.5059 19 14 10.3981 10.1221 -2.4320 20 1 11.0929 9.3409 -1.3773 21 1 11.1215 9.9687 -3.7198 22 1 10.3700 11.5561 -2.0476 23 6 5.1382 6.4817 -0.9954 24 6 4.9137 5.4605 0.1249 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 0.6475 2.1684 1.3314 31 1 2.0422 1.6180 2.0512 32 1 3.9954 0.8313 0.6659 33 1 3.8498 1.0378 -1.0960 34 1 3.4408 3.5485 0.1307 35 1 7.6847 5.0159 0.6600 36 1 7.7908 3.7197 -0.5603 37 1 7.0663 5.2587 -2.3275 38 1 8.4368 5.9948 -1.4613 39 1 6.6416 7.5890 -3.0079 40 1 6.0892 8.7547 -1.7814 41 1 8.1604 10.7755 -4.0587 42 1 4.8403 6.0465 -1.9492 43 1 4.5421 7.3730 -0.7998 44 1 3.8849 5.1019 0.0928 45 1 5.1121 5.9263 1.0901 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892143896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:13 Heat of formation + Delta-G solvation = -23.514052 kcal Electronic energy + Delta-G solvation = -22938.600059 eV Core-core repulsion = 19604.894476 eV Total energy + Delta-G solvation = -3333.705583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.14197 -38.06741 -37.20430 -34.35348 -33.95015 -32.33750 -31.15992 -30.60536 -28.71024 -27.54634 -25.40729 -23.81882 -22.92626 -22.01468 -21.11803 -20.57093 -19.08810 -17.89187 -16.65809 -16.41327 -16.10906 -15.43517 -15.13904 -14.86018 -14.68184 -14.43685 -14.21025 -14.02330 -13.80427 -13.61956 -13.38983 -12.99284 -12.76366 -12.19168 -12.13570 -11.96324 -11.91948 -11.43760 -11.29480 -11.23678 -11.06827 -10.81036 -10.69339 -10.55757 -10.46836 -9.91865 -9.79640 -9.23205 -9.14303 -8.99845 -8.46054 -8.21954 -7.27661 -6.04187 -4.05616 2.83980 3.31231 3.38776 3.42172 3.43821 3.97272 4.21064 4.38595 4.42087 4.54119 4.61888 4.85475 5.00406 5.06538 5.20935 5.31256 5.31686 5.43538 5.46158 5.49596 5.51337 5.60777 5.70547 5.73099 5.80674 5.90157 6.01060 6.11158 6.26256 6.49042 6.54783 6.61461 6.75042 6.79351 7.03320 7.19900 7.26198 7.32099 7.77749 8.04530 8.13278 8.19136 8.51193 8.80932 9.02210 9.58945 11.06733 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.038628 B = 0.002917 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.685129 B = 9595.704247 C = 9976.195453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.157 4.157 3 C 0.077 3.923 4 H 0.087 0.913 5 N -0.841 5.841 6 C 0.147 3.853 7 N -0.739 5.739 8 C 0.705 3.295 9 O -0.603 6.603 10 N -0.625 5.625 11 C 0.133 3.867 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.193 3.807 15 C -0.507 4.507 16 H 0.065 0.935 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.041 3.959 24 C 0.119 3.881 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.343 0.657 31 H 0.342 0.658 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.403 0.597 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.024 0.976 38 H 0.096 0.904 39 H -0.009 1.009 40 H 0.031 0.969 41 H 0.261 0.739 42 H 0.026 0.974 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.978 -16.893 8.024 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.197 4.197 3 C -0.035 4.035 4 H 0.106 0.894 5 N -0.372 5.372 6 C 0.022 3.978 7 N -0.398 5.398 8 C 0.407 3.593 9 O -0.483 6.483 10 N -0.362 5.362 11 C 0.010 3.990 12 C -0.078 4.078 13 N -0.260 5.260 14 C 0.069 3.931 15 C -0.546 4.546 16 H 0.083 0.917 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.089 4.089 24 C -0.004 4.004 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.241 0.759 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.042 0.958 38 H 0.114 0.886 39 H 0.008 0.992 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.876 -16.617 7.992 23.077 hybrid contribution -0.231 -0.323 -0.586 0.708 sum -14.108 -16.940 7.406 23.256 Atomic orbital electron populations 1.21778 0.95374 1.02048 1.01882 1.22270 0.96530 0.97809 1.03125 1.21756 0.94759 0.93070 0.93886 0.89443 1.58851 1.16391 1.58028 1.03917 1.21121 0.91644 0.83334 1.01710 1.45060 1.05900 1.09638 1.79159 1.15869 0.82494 0.83128 0.77847 1.90872 1.55250 1.43067 1.59089 1.47380 1.09446 1.03819 1.75572 1.21808 0.79219 0.98603 0.99322 1.22452 1.00394 0.90282 0.94693 1.62069 1.02762 1.07721 1.53471 1.19727 0.97685 0.87478 0.88258 1.21193 0.97058 1.16591 1.19748 0.91699 1.25000 0.97862 0.96583 0.95215 1.69972 1.35682 1.25053 1.23125 0.86436 0.84413 0.78674 0.77880 1.19587 1.21131 1.21035 1.22382 0.92563 0.97693 0.96243 1.21754 0.91917 0.86917 0.99840 0.92349 0.92841 0.92411 0.91630 0.90973 0.84357 0.84466 0.92055 0.91589 0.75939 0.91256 0.89468 0.95799 0.88563 0.99162 0.95077 0.92972 0.95627 0.90186 0.91009 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.68 37.16 0.36 -0.36 16 2 C -0.16 -0.88 5.58 -26.73 -0.15 -1.03 16 3 C 0.08 0.53 2.96 -67.71 -0.20 0.33 16 4 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 5 N -0.84 -5.21 8.63 -4.67 -0.04 -5.25 16 6 C 0.15 1.50 5.34 -4.04 -0.02 1.48 16 7 N -0.74 -9.11 5.30 -65.23 -0.35 -9.45 16 8 C 0.71 11.56 8.31 -86.92 -0.72 10.84 16 9 O -0.60 -11.91 15.83 5.28 0.08 -11.83 16 10 N -0.63 -10.09 3.00 -177.91 -0.53 -10.63 16 11 C 0.13 2.31 6.61 -3.36 -0.02 2.29 16 12 C 0.05 1.01 5.47 -3.46 -0.02 0.99 16 13 N -0.54 -11.31 4.62 -235.47 -1.09 -12.40 16 14 C 0.19 4.97 4.72 -4.98 -0.02 4.94 16 15 C -0.51 -14.05 8.41 -34.44 -0.29 -14.34 16 16 H 0.06 1.78 7.13 -52.49 -0.37 1.40 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 19 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 24 C 0.12 1.69 6.59 -3.60 -0.02 1.67 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.22 6.87 -51.93 -0.36 -0.14 16 27 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.34 1.64 7.55 -39.29 -0.30 1.35 16 31 H 0.34 2.05 9.00 -39.29 -0.35 1.70 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.40 4.41 5.64 -40.82 -0.23 4.18 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.53 7.09 -51.93 -0.37 1.16 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 2.02 6.67 -51.93 -0.35 1.67 16 39 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 40 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 44 H 0.07 0.81 5.63 -51.93 -0.29 0.52 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -32.31 353.80 -9.76 -42.07 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.65 Total: 2.53 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -1.23 Total: 8.94 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -1.27 Total: -63.55 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.31 -9.76 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892143896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.554 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds