Wall clock time and date at job start Tue Mar 31 2020 03:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46748 * 2 1 4 4 H 1.09000 * 109.46851 * 304.99562 * 3 2 1 5 5 N 1.46895 * 109.47607 * 65.00043 * 3 2 1 6 6 C 1.53004 * 109.46771 * 185.00059 * 3 2 1 7 7 N 1.46498 * 109.46870 * 184.99682 * 6 3 2 8 8 C 1.34774 * 120.00091 * 179.97438 * 7 6 3 9 9 O 1.21592 * 120.00067 * 354.91805 * 8 7 6 10 10 N 1.34780 * 120.00375 * 174.91899 * 8 7 6 11 11 C 1.47083 * 120.88219 * 184.71529 * 10 8 7 12 12 C 1.53698 * 108.27428 * 128.75613 * 11 10 8 13 13 N 1.46902 * 109.25551 * 54.07895 * 12 11 10 14 14 C 1.46900 * 110.99822 * 172.60535 * 13 12 11 15 15 C 1.50699 * 109.47197 * 294.30609 * 14 13 12 16 16 H 1.08002 * 120.00469 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99971 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46946 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46976 * 119.99447 * 19 17 15 22 22 H 1.48492 * 109.47298 * 239.99746 * 19 17 15 23 23 C 1.46893 * 111.27526 * 296.75731 * 13 12 11 24 24 C 1.47083 * 120.87776 * 4.99715 * 10 8 7 25 25 H 1.08994 * 109.47117 * 60.00524 * 1 2 3 26 26 H 1.09005 * 109.47202 * 299.99751 * 1 2 3 27 27 H 1.09010 * 109.47002 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47188 * 119.99973 * 2 1 3 29 29 H 1.08994 * 109.47221 * 239.99739 * 2 1 3 30 30 H 1.00903 * 110.99916 * 296.04896 * 5 3 2 31 31 H 1.00904 * 110.99719 * 59.99738 * 5 3 2 32 32 H 1.08997 * 109.47461 * 304.99549 * 6 3 2 33 33 H 1.08997 * 109.47348 * 65.00119 * 6 3 2 34 34 H 0.97001 * 120.00440 * 359.97438 * 7 6 3 35 35 H 1.08993 * 109.62682 * 248.52213 * 11 10 8 36 36 H 1.08994 * 109.62745 * 9.10596 * 11 10 8 37 37 H 1.09006 * 109.64823 * 294.08036 * 12 11 10 38 38 H 1.08994 * 109.41804 * 173.94834 * 12 11 10 39 39 H 1.09001 * 109.46920 * 54.30418 * 14 13 12 40 40 H 1.09001 * 109.47324 * 174.30898 * 14 13 12 41 41 H 0.97002 * 119.99791 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.49356 * 303.14692 * 23 13 12 43 43 H 1.08992 * 109.49653 * 183.06375 * 23 13 12 44 44 H 1.08995 * 109.62622 * 350.89660 * 24 10 8 45 45 H 1.08998 * 109.62840 * 111.47716 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 7 1.6513 2.0994 1.2551 6 6 3.5648 1.4444 -0.1257 7 7 4.0629 2.8169 -0.0061 8 6 5.3855 3.0631 -0.0859 9 8 6.1723 2.1393 -0.1645 10 7 5.8363 4.3333 -0.0787 11 6 7.2647 4.6285 -0.2682 12 6 7.3957 5.6828 -1.3788 13 7 6.5607 6.8445 -1.0451 14 6 6.7904 7.9464 -1.9889 15 6 8.2011 8.4536 -1.8355 16 1 8.8614 8.0022 -1.1097 17 6 8.6491 9.4939 -2.6217 18 7 7.8454 10.0433 -3.5059 19 14 10.3981 10.1221 -2.4320 20 1 11.0929 9.3409 -1.3773 21 1 11.1215 9.9687 -3.7198 22 1 10.3700 11.5561 -2.0476 23 6 5.1382 6.4817 -0.9954 24 6 4.9137 5.4605 0.1249 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 0.6475 2.1684 1.3314 31 1 2.0422 1.6180 2.0512 32 1 3.9954 0.8313 0.6659 33 1 3.8498 1.0378 -1.0960 34 1 3.4408 3.5485 0.1307 35 1 7.6847 5.0159 0.6600 36 1 7.7908 3.7197 -0.5603 37 1 7.0663 5.2587 -2.3275 38 1 8.4368 5.9948 -1.4613 39 1 6.6416 7.5890 -3.0079 40 1 6.0892 8.7547 -1.7814 41 1 8.1604 10.7755 -4.0587 42 1 4.8403 6.0465 -1.9492 43 1 4.5421 7.3730 -0.7998 44 1 3.8849 5.1019 0.0928 45 1 5.1121 5.9263 1.0901 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892143896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:12 Heat of formation + Delta-G solvation = -48.475610 kcal Electronic energy + Delta-G solvation = -22939.682473 eV Core-core repulsion = 19604.894476 eV Total energy + Delta-G solvation = -3334.787997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41953 -39.25769 -38.21119 -35.95775 -35.05439 -34.28927 -32.08193 -31.55578 -30.16962 -28.72828 -27.09000 -24.86312 -24.16194 -23.69551 -22.06325 -21.73140 -20.33633 -19.13040 -18.48718 -17.41451 -17.28367 -16.77472 -16.44970 -16.01357 -15.88691 -15.63774 -15.40822 -15.32300 -14.96017 -14.82445 -14.72215 -14.16774 -13.92374 -13.67752 -13.33682 -13.10477 -12.86064 -12.73624 -12.58817 -12.42615 -12.34010 -12.29403 -12.16250 -11.92824 -11.78709 -11.73355 -11.35346 -11.13173 -10.61642 -10.19760 -9.62744 -9.53700 -9.02624 -8.20208 -6.29738 1.42493 1.43291 1.56742 1.65329 2.13434 2.41435 2.92611 3.12286 3.24358 3.62819 3.78721 3.96291 4.02697 4.08220 4.16686 4.18439 4.26990 4.40234 4.45532 4.56192 4.61311 4.73474 4.74964 4.78267 4.86335 4.93409 4.95936 5.03460 5.12773 5.18423 5.23830 5.25155 5.35877 5.47700 5.55308 5.65182 5.98406 6.04595 6.23505 6.27644 6.59318 6.61894 6.86167 7.00365 7.40031 7.56362 8.91171 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.038628 B = 0.002917 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.685129 B = 9595.704247 C = 9976.195453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.090 3.910 4 H 0.089 0.911 5 N -0.845 5.845 6 C 0.144 3.856 7 N -0.722 5.722 8 C 0.700 3.300 9 O -0.640 6.640 10 N -0.629 5.629 11 C 0.145 3.855 12 C 0.058 3.942 13 N -0.538 5.538 14 C 0.209 3.791 15 C -0.522 4.522 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.278 1.278 23 C 0.038 3.962 24 C 0.129 3.871 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.353 0.647 31 H 0.345 0.655 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.411 0.589 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.009 0.991 38 H 0.080 0.920 39 H -0.042 1.042 40 H 0.011 0.989 41 H 0.264 0.736 42 H 0.018 0.982 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.833 -17.399 9.430 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C -0.022 4.022 4 H 0.107 0.893 5 N -0.377 5.377 6 C 0.019 3.981 7 N -0.380 5.380 8 C 0.402 3.598 9 O -0.522 6.522 10 N -0.366 5.366 11 C 0.022 3.978 12 C -0.072 4.072 13 N -0.263 5.263 14 C 0.083 3.917 15 C -0.560 4.560 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.204 1.204 23 C -0.091 4.091 24 C 0.006 3.994 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.251 0.749 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.027 0.973 38 H 0.098 0.902 39 H -0.024 1.024 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.108 0.892 44 H 0.125 0.875 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.791 -17.134 9.421 24.518 hybrid contribution -0.038 -0.205 -1.036 1.057 sum -14.829 -17.339 8.386 24.308 Atomic orbital electron populations 1.21760 0.94405 1.02384 1.02295 1.22221 0.97254 0.96769 1.03057 1.21586 0.92152 0.94073 0.94390 0.89285 1.58821 1.17313 1.57916 1.03601 1.21282 0.93898 0.81908 1.00973 1.44996 1.04460 1.10901 1.77674 1.16055 0.83450 0.82590 0.77714 1.90847 1.56503 1.44114 1.60753 1.47394 1.09169 1.04440 1.75564 1.21572 0.80429 0.97382 0.98454 1.22367 0.99223 0.90363 0.95211 1.61995 1.05407 1.07350 1.51553 1.19379 0.96547 0.88350 0.87471 1.21501 0.97979 1.16778 1.19739 0.91645 1.25906 1.02231 0.96787 0.94762 1.70090 1.37800 1.25653 1.24001 0.85338 0.79088 0.78151 0.78071 1.18620 1.20686 1.20381 1.22519 0.90119 0.99136 0.97293 1.21807 0.93345 0.85480 0.98728 0.92398 0.91963 0.92160 0.91490 0.91347 0.83164 0.84191 0.92722 0.92509 0.74895 0.90386 0.89739 0.97269 0.90151 1.02434 0.97046 0.92717 0.96387 0.89220 0.87501 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.68 71.98 0.70 -0.39 16 2 C -0.15 -1.43 5.58 30.59 0.17 -1.26 16 3 C 0.09 1.05 2.96 44.92 0.13 1.19 16 4 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 5 N -0.84 -8.31 8.63 -168.68 -1.46 -9.77 16 6 C 0.14 2.74 5.34 86.38 0.46 3.20 16 7 N -0.72 -16.45 5.30 -478.53 -2.54 -18.99 16 8 C 0.70 22.09 8.31 179.05 1.49 23.57 16 9 O -0.64 -24.98 15.83 -4.01 -0.06 -25.05 16 10 N -0.63 -19.42 3.00 -835.03 -2.51 -21.93 16 11 C 0.15 4.95 6.61 86.50 0.57 5.52 16 12 C 0.06 2.31 5.47 86.54 0.47 2.79 16 13 N -0.54 -22.89 4.62 -898.90 -4.15 -27.04 16 14 C 0.21 11.02 4.72 85.56 0.40 11.43 16 15 C -0.52 -29.30 8.41 25.60 0.22 -29.09 16 16 H 0.07 3.60 7.13 -2.91 -0.02 3.58 16 17 C 0.00 0.06 5.46 84.65 0.46 0.52 16 18 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 19 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 C 0.04 1.29 5.62 86.39 0.49 1.78 16 24 C 0.13 3.36 6.59 86.35 0.57 3.93 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.34 6.87 -2.38 -0.02 0.33 16 27 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.35 2.39 7.55 -89.69 -0.68 1.71 16 31 H 0.34 3.30 9.00 -89.69 -0.81 2.49 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.41 7.82 5.64 -92.71 -0.52 7.30 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.08 2.95 7.09 -2.39 -0.02 2.94 16 37 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.08 3.45 6.67 -2.39 -0.02 3.44 16 39 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 40 H 0.01 0.64 7.97 -2.39 -0.02 0.62 16 41 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.09 2.85 7.99 -2.39 -0.02 2.83 16 44 H 0.11 2.04 5.63 -2.39 -0.01 2.03 16 45 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -70.22 353.80 -3.28 -73.51 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -1.01 Total: 15.63 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: 6.13 Total: 23.19 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -10.37 Total: -133.53 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.05 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -70.22 -3.28 -73.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892143896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.032 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds