Wall clock time and date at job start Tue Mar 31 2020 03:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 N 1.46494 * 109.52323 * 177.55517 * 5 4 3 7 7 C 1.46508 * 119.99612 * 120.31478 * 6 5 4 8 8 C 1.53003 * 109.46579 * 90.00257 * 7 6 5 9 9 O 1.42903 * 109.47196 * 64.99873 * 8 7 6 10 10 C 1.34771 * 120.00265 * 300.31844 * 6 5 4 11 11 O 1.21278 * 120.00105 * 359.97438 * 10 6 5 12 12 C 1.50702 * 119.99928 * 179.97438 * 10 6 5 13 13 C 1.53006 * 109.47148 * 179.97438 * 12 10 6 14 14 C 1.50702 * 109.47148 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99862 * 0.02562 * 14 13 12 16 16 C 1.37869 * 119.99795 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00241 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99894 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47272 * 59.99638 * 18 16 14 20 20 H 1.48504 * 109.47193 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47030 * 299.99494 * 18 16 14 22 22 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 23 23 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 24 24 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 25 25 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 26 26 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 27 27 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 28 28 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 29 29 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 30 30 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 31 31 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 32 32 H 1.08995 * 109.47023 * 209.99850 * 7 6 5 33 33 H 1.08996 * 109.47222 * 330.00348 * 7 6 5 34 34 H 1.09006 * 109.46638 * 184.99584 * 8 7 6 35 35 H 1.08995 * 109.47375 * 304.99743 * 8 7 6 36 36 H 0.96701 * 113.99950 * 179.97438 * 9 8 7 37 37 H 1.09003 * 109.47715 * 299.99959 * 12 10 6 38 38 H 1.09002 * 109.47142 * 60.00236 * 12 10 6 39 39 H 1.08993 * 109.46959 * 300.00034 * 13 12 10 40 40 H 1.09002 * 109.46817 * 60.00147 * 13 12 10 41 41 H 0.97008 * 120.00429 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.50326 * 182.41022 * 22 5 4 43 43 H 1.08994 * 109.50594 * 62.28334 * 22 5 4 44 44 H 1.09005 * 109.46673 * 294.18102 * 23 2 1 45 45 H 1.09003 * 109.46587 * 54.14643 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 7 5.5716 0.4489 0.8481 7 6 6.4611 0.9905 1.8785 8 6 6.7702 -0.0978 2.9086 9 8 7.5106 -1.1484 2.2841 10 6 6.0898 -0.1304 -0.2530 11 8 5.3535 -0.5791 -1.1058 12 6 7.5844 -0.2205 -0.4244 13 6 7.9048 -0.9177 -1.7482 14 6 9.3993 -1.0084 -1.9193 15 1 10.0550 -0.6091 -1.1597 16 6 9.9294 -1.6010 -3.0456 17 7 9.1309 -2.0877 -3.9704 18 14 11.7819 -1.7141 -3.2574 19 1 12.3618 -2.4942 -2.1348 20 1 12.0929 -2.3896 -4.5429 21 1 12.3638 -0.3479 -3.2634 22 6 3.5182 -0.8715 1.0210 23 6 1.9952 -0.7707 1.1338 24 1 -0.3634 0.4471 0.9253 25 1 -0.3633 -1.0249 -0.0754 26 1 -0.3633 0.5778 -0.8499 27 1 1.5634 1.9257 -0.8330 28 1 1.7324 1.8608 0.9376 29 1 3.9099 2.3512 -0.1310 30 1 3.7820 0.8572 -1.0905 31 1 3.8886 1.0355 1.9561 32 1 7.3890 1.3277 1.4168 33 1 5.9748 1.8312 2.3730 34 1 7.3587 0.3280 3.7214 35 1 5.8373 -0.4974 3.3061 36 1 7.7422 -1.8742 2.8796 37 1 8.0108 0.7826 -0.4292 38 1 8.0108 -0.7927 0.3996 39 1 7.4785 -1.9208 -1.7430 40 1 7.4783 -0.3459 -2.5724 41 1 9.5039 -2.5043 -4.7630 42 1 3.9098 -1.4302 1.8710 43 1 3.7813 -1.3836 0.0955 44 1 1.7324 -0.2708 2.0661 45 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911941512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:02 Heat of formation + Delta-G solvation = -84.955055 kcal Electronic energy + Delta-G solvation = -23959.192844 eV Core-core repulsion = 20590.530228 eV Total energy + Delta-G solvation = -3368.662616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.12318 -38.15881 -36.87035 -35.00161 -33.36446 -32.47748 -30.83111 -30.56056 -28.81084 -26.63708 -25.18080 -23.18042 -22.96251 -22.74030 -21.05695 -19.90384 -18.12599 -17.47067 -16.72389 -16.14256 -15.73379 -15.42958 -15.11969 -14.92747 -14.55889 -14.31134 -14.11637 -13.69907 -13.35616 -13.19769 -12.74314 -12.55886 -12.44128 -12.41415 -12.09393 -12.02994 -11.63152 -11.46764 -11.30050 -10.98620 -10.92408 -10.76752 -10.50092 -10.46490 -10.42642 -9.94842 -9.65091 -9.38767 -8.97447 -8.64797 -8.32209 -8.26817 -8.17094 -5.83828 -3.86924 3.33216 3.41396 3.45635 3.47480 3.48313 3.88061 4.26740 4.56656 4.80738 4.83397 4.96764 5.07989 5.10504 5.19237 5.22088 5.29465 5.35446 5.42894 5.47257 5.50235 5.50676 5.53113 5.65497 5.73698 5.74833 5.80623 5.87636 6.04193 6.11892 6.44282 6.53552 6.57960 6.79008 7.01706 7.05918 7.06764 7.22317 7.73901 7.88612 7.95445 8.06825 8.23351 8.55301 9.00495 9.22395 9.75365 11.27212 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.004274 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.843450 B = 6549.900981 C = 7394.236717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.541 5.541 3 C 0.064 3.936 4 C -0.137 4.137 5 C 0.156 3.844 6 N -0.621 5.621 7 C 0.111 3.889 8 C 0.057 3.943 9 O -0.553 6.553 10 C 0.523 3.477 11 O -0.527 6.527 12 C -0.135 4.135 13 C 0.040 3.960 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.891 5.891 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.134 4.134 23 C 0.064 3.936 24 H 0.020 0.980 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.374 0.626 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.021 0.979 40 H 0.018 0.982 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.100 0.900 44 H 0.026 0.974 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.298 7.141 17.160 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.265 5.265 3 C -0.064 4.064 4 C -0.176 4.176 5 C 0.052 3.948 6 N -0.356 5.356 7 C -0.013 4.013 8 C -0.022 4.022 9 O -0.359 6.359 10 C 0.314 3.686 11 O -0.402 6.402 12 C -0.174 4.174 13 C 0.002 3.998 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.530 5.530 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.173 4.173 23 C -0.064 4.064 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.221 0.779 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.039 0.961 40 H 0.036 0.964 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.044 0.956 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.595 6.969 15.550 21.799 hybrid contribution 0.762 0.052 1.326 1.531 sum -12.832 7.020 16.876 22.333 Atomic orbital electron populations 1.22339 0.87544 1.02174 1.00089 1.61850 1.07129 1.13889 1.43652 1.22020 0.95656 0.88844 0.99870 1.22063 0.93489 0.99954 1.02067 1.20918 0.80347 0.96007 0.97528 1.48170 1.04934 1.61213 1.21313 1.21610 0.95629 0.94364 0.89657 1.22664 0.94738 0.89767 0.95038 1.86670 1.75823 1.33269 1.40106 1.21491 0.92512 0.75228 0.79380 1.90607 1.61940 1.46125 1.41558 1.22060 0.88824 1.02202 1.04363 1.18859 0.95488 0.95910 0.89509 1.21213 0.92052 1.38017 1.04616 0.92818 1.25012 0.97616 0.95714 0.96074 1.69996 1.34398 1.39228 1.09425 0.86696 0.86140 0.78104 0.77216 1.20329 1.21390 1.20372 1.22040 0.93317 0.97424 1.04484 1.22027 0.95740 0.98044 0.90618 0.96114 0.91419 0.91433 0.90709 0.95535 0.91881 0.88053 0.91231 0.89057 0.89835 0.93261 0.94003 0.77919 0.91485 0.87497 0.96063 0.96360 0.93072 0.92049 0.88109 0.95574 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.59 60.07 0.58 0.84 16 2 N -0.54 -6.90 4.91 -242.95 -1.19 -8.09 16 3 C 0.06 0.77 5.46 -3.83 -0.02 0.75 16 4 C -0.14 -1.94 5.33 -26.65 -0.14 -2.08 16 5 C 0.16 2.10 2.62 -67.81 -0.18 1.92 16 6 N -0.62 -9.44 2.41 -165.97 -0.40 -9.84 16 7 C 0.11 1.29 5.75 -4.04 -0.02 1.26 16 8 C 0.06 0.58 7.39 37.16 0.27 0.86 16 9 O -0.55 -7.25 10.38 -35.23 -0.37 -7.62 16 10 C 0.52 10.68 6.79 -10.99 -0.07 10.60 16 11 O -0.53 -12.67 12.14 5.56 0.07 -12.60 16 12 C -0.14 -2.99 4.12 -27.88 -0.11 -3.10 16 13 C 0.04 1.13 4.26 -27.88 -0.12 1.01 16 14 C -0.52 -15.37 9.11 -34.44 -0.31 -15.69 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -28.30 13.29 55.43 0.74 -27.57 16 18 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.13 -1.91 5.34 -26.65 -0.14 -2.05 16 23 C 0.06 0.77 5.46 -3.83 -0.02 0.75 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 28 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.87 6.09 -51.93 -0.32 1.56 16 31 H 0.07 0.76 7.80 -51.93 -0.41 0.36 16 32 H 0.09 1.14 6.44 -51.93 -0.33 0.80 16 33 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.37 3.31 9.12 45.56 0.42 3.73 16 37 H 0.07 1.39 7.40 -51.93 -0.38 1.01 16 38 H 0.11 2.29 5.12 -51.93 -0.27 2.02 16 39 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.02 0.56 8.10 -51.93 -0.42 0.14 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.10 1.88 6.11 -51.93 -0.32 1.57 16 44 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -36.00 348.37 -8.37 -44.37 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.05 Total: 2.15 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.40 Total: -3.32 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.86 Total: -45.50 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.30 Total: -20.22 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.00 -8.37 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911941512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.583 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds