Wall clock time and date at job start Tue Mar 31 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47124 * 2 1 4 4 C 1.42909 * 114.00061 * 175.62480 * 3 2 1 5 5 H 1.09008 * 109.46635 * 329.13647 * 4 3 2 6 6 C 1.50696 * 109.47269 * 89.13361 * 4 3 2 7 7 O 1.21287 * 120.00048 * 4.99997 * 6 4 3 8 8 N 1.34778 * 119.99990 * 185.00179 * 6 4 3 9 9 C 1.46497 * 119.99923 * 179.97438 * 8 6 4 10 10 C 1.53005 * 109.47037 * 179.97438 * 9 8 6 11 11 N 1.46498 * 109.47048 * 180.02562 * 10 9 8 12 12 C 1.36938 * 119.99994 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99932 * 0.02562 * 12 11 10 14 14 C 1.38811 * 120.00005 * 179.97438 * 12 11 10 15 15 N 1.31620 * 120.00203 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00157 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46992 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47127 * 119.99983 * 16 14 12 19 19 H 1.48494 * 109.47574 * 240.00301 * 16 14 12 20 20 C 1.52994 * 109.47142 * 209.13612 * 4 3 2 21 21 C 1.54268 * 110.03167 * 171.29879 * 20 4 3 22 22 C 1.54896 * 104.19311 * 217.10464 * 21 20 4 23 23 C 1.54887 * 102.75089 * 37.94270 * 22 21 20 24 24 C 1.53880 * 110.03282 * 54.13243 * 20 4 3 25 25 H 1.09003 * 109.47363 * 300.00539 * 1 2 3 26 26 H 1.09004 * 109.46654 * 60.00250 * 1 2 3 27 27 H 1.09003 * 109.47442 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46654 * 119.99750 * 2 1 3 29 29 H 1.09003 * 109.47363 * 239.99461 * 2 1 3 30 30 H 0.97000 * 119.99948 * 0.02562 * 8 6 4 31 31 H 1.08999 * 109.47384 * 300.00285 * 9 8 6 32 32 H 1.09006 * 109.47015 * 60.00128 * 9 8 6 33 33 H 1.08995 * 109.46900 * 300.00336 * 10 9 8 34 34 H 1.08998 * 109.46672 * 60.00831 * 10 9 8 35 35 H 0.97000 * 120.00039 * 359.97438 * 11 10 9 36 36 H 0.97000 * 120.00514 * 179.97438 * 15 14 12 37 37 H 1.09002 * 110.01909 * 292.73784 * 20 4 3 38 38 H 1.09001 * 110.48242 * 335.77916 * 21 20 4 39 39 H 1.08994 * 110.48422 * 98.42519 * 21 20 4 40 40 H 1.09000 * 110.75532 * 279.62415 * 22 21 20 41 41 H 1.09000 * 110.90979 * 156.32914 * 22 21 20 42 42 H 1.08995 * 110.48768 * 203.37902 * 23 22 21 43 43 H 1.09006 * 110.59896 * 80.78416 * 23 22 21 44 44 H 1.09005 * 110.02947 * 238.56691 * 24 20 4 45 45 H 1.08996 * 110.03099 * 359.97438 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4273 1.4613 0.0996 5 1 3.8193 0.6246 0.6780 6 6 4.0307 1.4439 -1.2812 7 8 3.3110 1.4352 -2.2574 8 7 5.3701 1.4380 -1.4313 9 6 5.9567 1.4205 -2.7736 10 6 7.4827 1.4177 -2.6633 11 7 8.0693 1.4009 -4.0057 12 6 9.4301 1.3950 -4.1582 13 1 10.0710 1.4023 -3.2889 14 6 9.9859 1.3784 -5.4301 15 7 9.2049 1.3689 -6.4895 16 14 11.8422 1.3711 -5.6382 17 1 12.4902 1.3847 -4.3020 18 1 12.2529 0.1488 -6.3746 19 1 12.2594 2.5735 -6.4033 20 6 3.7859 2.7754 0.7963 21 6 5.2965 2.8141 1.1064 22 6 5.3841 3.5230 2.4809 23 6 4.1502 2.9649 3.2326 24 6 3.0570 2.8713 2.1481 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 5.9457 1.4446 -0.6505 31 1 5.6285 0.5254 -3.3019 32 1 5.6340 2.3052 -3.3226 33 1 7.8104 2.3131 -2.1352 34 1 7.8056 0.5332 -2.1143 35 1 7.4937 1.3931 -4.7864 36 1 9.5933 1.3577 -7.3783 37 1 3.5121 3.6199 0.1638 38 1 5.6984 1.8030 1.1724 39 1 5.8273 3.3878 0.3468 40 1 5.3085 4.6040 2.3634 41 1 6.3053 3.2556 2.9986 42 1 3.8444 3.6486 4.0244 43 1 4.3653 1.9784 3.6434 44 1 2.4302 3.7628 2.1720 45 1 2.4475 1.9818 2.3076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131893197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:58 Heat of formation + Delta-G solvation = -91.679417 kcal Electronic energy + Delta-G solvation = -22956.866501 eV Core-core repulsion = 19587.912295 eV Total energy + Delta-G solvation = -3368.954206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.42038 -38.16808 -37.37331 -35.59274 -33.84710 -32.18029 -31.23424 -29.98005 -28.93794 -27.72838 -25.54222 -23.52633 -22.99230 -21.61628 -20.85176 -20.46845 -20.01091 -17.76639 -17.34272 -16.85415 -16.03280 -15.79113 -15.42631 -14.96672 -14.86806 -14.55181 -14.19830 -13.82536 -13.58639 -13.53537 -13.18510 -12.92403 -12.74618 -12.47662 -11.99753 -11.56965 -11.53580 -11.36528 -11.33903 -11.32274 -11.24291 -11.10326 -10.92743 -10.83664 -10.81421 -10.63060 -10.41857 -10.08840 -9.80770 -9.21100 -8.99114 -8.81689 -7.00409 -5.80537 -3.11388 2.66790 3.07829 3.41315 3.45842 3.49042 3.52459 4.28251 4.34001 4.47812 4.56914 4.75456 4.78253 4.89652 4.96289 5.09474 5.16290 5.21560 5.26901 5.32333 5.41161 5.48541 5.49305 5.50413 5.55516 5.63862 5.70934 5.75914 5.77619 5.85114 5.92496 5.95263 5.96494 6.07122 6.10835 6.14492 6.48404 6.69245 6.72537 6.91135 7.62374 7.65333 8.33005 8.37203 9.48287 10.03111 10.37859 11.42086 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.003305 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.256292 B = 8470.089060 C = 9635.603404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.084 3.916 5 H 0.084 0.916 6 C 0.485 3.515 7 O -0.527 6.527 8 N -0.723 5.723 9 C 0.109 3.891 10 C 0.145 3.855 11 N -0.730 5.730 12 C -0.244 4.244 13 H 0.072 0.928 14 C -0.012 4.012 15 N -0.930 5.930 16 Si 0.910 3.090 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.084 4.084 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.111 4.111 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.398 0.602 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.023 0.977 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.880 0.329 21.664 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.022 3.978 5 H 0.101 0.899 6 C 0.270 3.730 7 O -0.402 6.402 8 N -0.378 5.378 9 C -0.015 4.015 10 C 0.017 3.983 11 N -0.375 5.375 12 C -0.375 4.375 13 H 0.090 0.910 14 C -0.209 4.209 15 N -0.578 5.578 16 Si 0.741 3.259 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.103 4.103 21 C -0.166 4.166 22 C -0.159 4.159 23 C -0.165 4.165 24 C -0.149 4.149 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.234 0.766 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.375 0.474 20.960 25.420 hybrid contribution 1.305 -0.306 -0.243 1.362 sum -13.070 0.168 20.717 24.496 Atomic orbital electron populations 1.21707 0.93489 1.02186 1.03154 1.22589 0.95896 0.83639 1.00139 1.87975 1.18352 1.26585 1.94199 1.22142 0.83224 0.99768 0.92693 0.89865 1.21331 0.82587 0.76928 0.92159 1.90719 1.60468 1.48299 1.40724 1.46213 1.06521 1.75095 1.09992 1.21587 0.94491 1.02546 0.82834 1.20749 0.88957 0.98345 0.90239 1.42203 1.04532 1.89658 1.01078 1.19235 0.82627 1.43327 0.92279 0.90977 1.24784 0.97992 1.02675 0.95403 1.69678 1.33574 1.57240 0.97335 0.86080 0.85068 0.77243 0.77541 1.20499 1.21780 1.21759 1.21808 0.95696 0.95743 0.97033 1.22583 0.94525 1.01235 0.98266 1.22463 0.98198 1.00203 0.95069 1.22416 0.95366 1.01009 0.97706 1.22086 0.97557 1.02644 0.92624 0.92003 0.91565 0.91145 0.93495 0.92902 0.76570 0.91384 0.91271 0.95791 0.95893 0.77999 0.93397 0.89618 0.91165 0.90296 0.91204 0.91166 0.91665 0.91672 0.91436 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.05 0.56 6.51 37.16 0.24 0.81 16 3 O -0.35 -4.46 8.65 -55.09 -0.48 -4.94 16 4 C 0.08 0.95 1.94 -27.89 -0.05 0.89 16 5 H 0.08 0.76 7.57 -51.92 -0.39 0.37 16 6 C 0.49 7.30 7.10 -10.99 -0.08 7.22 16 7 O -0.53 -10.31 16.51 -14.31 -0.24 -10.54 16 8 N -0.72 -10.12 5.14 -60.29 -0.31 -10.43 16 9 C 0.11 1.92 5.79 -4.04 -0.02 1.89 16 10 C 0.15 2.85 6.37 -4.04 -0.03 2.83 16 11 N -0.73 -18.63 5.60 -59.91 -0.34 -18.97 16 12 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 13 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 14 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 15 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 16 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 C -0.08 -0.81 2.69 -89.50 -0.24 -1.05 16 21 C -0.13 -1.06 4.57 -25.07 -0.11 -1.17 16 22 C -0.12 -0.86 6.91 -24.74 -0.17 -1.03 16 23 C -0.13 -0.86 6.83 -25.07 -0.17 -1.03 16 24 C -0.11 -0.90 6.17 -25.61 -0.16 -1.06 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.39 7.99 -51.93 -0.41 -0.03 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.40 4.45 5.64 -40.82 -0.23 4.22 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.39 10.47 7.67 -40.82 -0.31 10.16 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.51 6.65 -51.93 -0.35 0.16 16 39 H 0.08 0.71 7.95 -51.93 -0.41 0.30 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.58 7.22 -51.93 -0.37 0.20 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -33.50 361.29 -8.82 -42.32 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.95 Total: 7.48 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.66 Total: -0.02 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.08 Total: -57.01 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.71 Total: -15.48 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.50 -8.82 -42.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131893197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.361 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds