Wall clock time and date at job start Tue Mar 31 2020 03:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47124 * 2 1 4 4 C 1.42909 * 114.00061 * 175.62480 * 3 2 1 5 5 H 1.09008 * 109.46635 * 329.13647 * 4 3 2 6 6 C 1.50696 * 109.47269 * 89.13361 * 4 3 2 7 7 O 1.21287 * 120.00048 * 4.99997 * 6 4 3 8 8 N 1.34778 * 119.99990 * 185.00179 * 6 4 3 9 9 C 1.46497 * 119.99923 * 179.97438 * 8 6 4 10 10 C 1.53005 * 109.47037 * 179.97438 * 9 8 6 11 11 N 1.46498 * 109.47048 * 180.02562 * 10 9 8 12 12 C 1.36938 * 119.99994 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99932 * 0.02562 * 12 11 10 14 14 C 1.38811 * 120.00005 * 179.97438 * 12 11 10 15 15 N 1.31620 * 120.00203 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00157 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46992 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47127 * 119.99983 * 16 14 12 19 19 H 1.48494 * 109.47574 * 240.00301 * 16 14 12 20 20 C 1.52994 * 109.47142 * 209.13612 * 4 3 2 21 21 C 1.54268 * 110.03167 * 171.29879 * 20 4 3 22 22 C 1.54896 * 104.19311 * 217.10464 * 21 20 4 23 23 C 1.54887 * 102.75089 * 37.94270 * 22 21 20 24 24 C 1.53880 * 110.03282 * 54.13243 * 20 4 3 25 25 H 1.09003 * 109.47363 * 300.00539 * 1 2 3 26 26 H 1.09004 * 109.46654 * 60.00250 * 1 2 3 27 27 H 1.09003 * 109.47442 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46654 * 119.99750 * 2 1 3 29 29 H 1.09003 * 109.47363 * 239.99461 * 2 1 3 30 30 H 0.97000 * 119.99948 * 0.02562 * 8 6 4 31 31 H 1.08999 * 109.47384 * 300.00285 * 9 8 6 32 32 H 1.09006 * 109.47015 * 60.00128 * 9 8 6 33 33 H 1.08995 * 109.46900 * 300.00336 * 10 9 8 34 34 H 1.08998 * 109.46672 * 60.00831 * 10 9 8 35 35 H 0.97000 * 120.00039 * 359.97438 * 11 10 9 36 36 H 0.97000 * 120.00514 * 179.97438 * 15 14 12 37 37 H 1.09002 * 110.01909 * 292.73784 * 20 4 3 38 38 H 1.09001 * 110.48242 * 335.77916 * 21 20 4 39 39 H 1.08994 * 110.48422 * 98.42519 * 21 20 4 40 40 H 1.09000 * 110.75532 * 279.62415 * 22 21 20 41 41 H 1.09000 * 110.90979 * 156.32914 * 22 21 20 42 42 H 1.08995 * 110.48768 * 203.37902 * 23 22 21 43 43 H 1.09006 * 110.59896 * 80.78416 * 23 22 21 44 44 H 1.09005 * 110.02947 * 238.56691 * 24 20 4 45 45 H 1.08996 * 110.03099 * 359.97438 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4273 1.4613 0.0996 5 1 3.8193 0.6246 0.6780 6 6 4.0307 1.4439 -1.2812 7 8 3.3110 1.4352 -2.2574 8 7 5.3701 1.4380 -1.4313 9 6 5.9567 1.4205 -2.7736 10 6 7.4827 1.4177 -2.6633 11 7 8.0693 1.4009 -4.0057 12 6 9.4301 1.3950 -4.1582 13 1 10.0710 1.4023 -3.2889 14 6 9.9859 1.3784 -5.4301 15 7 9.2049 1.3689 -6.4895 16 14 11.8422 1.3711 -5.6382 17 1 12.4902 1.3847 -4.3020 18 1 12.2529 0.1488 -6.3746 19 1 12.2594 2.5735 -6.4033 20 6 3.7859 2.7754 0.7963 21 6 5.2965 2.8141 1.1064 22 6 5.3841 3.5230 2.4809 23 6 4.1502 2.9649 3.2326 24 6 3.0570 2.8713 2.1481 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 5.9457 1.4446 -0.6505 31 1 5.6285 0.5254 -3.3019 32 1 5.6340 2.3052 -3.3226 33 1 7.8104 2.3131 -2.1352 34 1 7.8056 0.5332 -2.1143 35 1 7.4937 1.3931 -4.7864 36 1 9.5933 1.3577 -7.3783 37 1 3.5121 3.6199 0.1638 38 1 5.6984 1.8030 1.1724 39 1 5.8273 3.3878 0.3468 40 1 5.3085 4.6040 2.3634 41 1 6.3053 3.2556 2.9986 42 1 3.8444 3.6486 4.0244 43 1 4.3653 1.9784 3.6434 44 1 2.4302 3.7628 2.1720 45 1 2.4475 1.9818 2.3076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131893197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:57 Heat of formation + Delta-G solvation = -113.672239 kcal Electronic energy + Delta-G solvation = -22957.820181 eV Core-core repulsion = 19587.912295 eV Total energy + Delta-G solvation = -3369.907886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.49054 -39.17084 -38.20900 -37.23357 -35.51798 -33.36707 -32.73053 -30.92818 -29.63213 -29.18662 -26.65533 -25.29297 -23.83736 -23.16768 -21.71243 -21.48125 -20.73842 -19.35149 -18.76539 -17.93413 -17.08355 -16.85909 -16.47902 -16.29933 -16.21306 -15.88021 -15.24629 -15.11713 -14.95333 -14.80813 -14.60772 -14.17664 -13.43582 -13.24794 -13.11264 -13.05779 -12.85125 -12.71215 -12.54559 -12.32170 -12.15846 -12.07495 -12.05169 -11.89393 -11.87388 -11.85204 -11.54413 -11.38602 -11.27410 -11.01643 -10.33284 -10.20062 -9.08103 -7.97637 -5.29437 1.46954 1.48399 1.49851 1.59980 1.93463 2.54794 2.62665 3.36876 3.48499 3.60561 3.78067 3.84611 3.98163 4.00534 4.13337 4.17600 4.17901 4.24045 4.38483 4.45573 4.54512 4.56648 4.63372 4.66483 4.76574 4.84686 4.89696 4.97374 5.01519 5.02558 5.10121 5.16939 5.24010 5.29961 5.32154 5.33500 5.45089 5.48390 5.53861 6.02164 6.22903 6.48583 7.14723 7.29107 8.00357 8.23541 9.26317 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.003305 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.256292 B = 8470.089060 C = 9635.603404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 O -0.372 6.372 4 C 0.090 3.910 5 H 0.115 0.885 6 C 0.482 3.518 7 O -0.578 6.578 8 N -0.707 5.707 9 C 0.125 3.875 10 C 0.150 3.850 11 N -0.748 5.748 12 C -0.247 4.247 13 H 0.085 0.915 14 C -0.078 4.078 15 N -0.972 5.972 16 Si 0.980 3.020 17 H -0.260 1.260 18 H -0.294 1.294 19 H -0.294 1.294 20 C -0.082 4.082 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.108 4.108 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.415 0.585 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.373 0.627 36 H 0.252 0.748 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.024 -0.126 24.750 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.290 6.290 4 C 0.029 3.971 5 H 0.133 0.867 6 C 0.269 3.731 7 O -0.457 6.457 8 N -0.363 5.363 9 C 0.000 4.000 10 C 0.023 3.977 11 N -0.391 5.391 12 C -0.378 4.378 13 H 0.103 0.897 14 C -0.270 4.270 15 N -0.622 5.622 16 Si 0.808 3.192 17 H -0.184 1.184 18 H -0.221 1.221 19 H -0.221 1.221 20 C -0.101 4.101 21 C -0.168 4.168 22 C -0.157 4.157 23 C -0.159 4.159 24 C -0.145 4.145 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.255 0.745 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.205 0.795 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.505 0.021 24.138 27.659 hybrid contribution 0.959 -0.162 -1.153 1.509 sum -12.546 -0.141 22.984 26.186 Atomic orbital electron populations 1.21725 0.92381 1.03430 1.02719 1.22783 0.96950 0.82807 1.00418 1.87974 1.18931 1.28011 1.94076 1.22279 0.82763 1.01831 0.90253 0.86750 1.22187 0.82268 0.75306 0.93329 1.90697 1.61593 1.50649 1.42786 1.46023 1.06669 1.74482 1.09153 1.21172 0.93450 1.00930 0.84443 1.20844 0.89670 0.99389 0.87763 1.42448 1.04035 1.89761 1.02864 1.19698 0.83875 1.41566 0.92674 0.89726 1.25686 1.02687 1.03352 0.95261 1.69848 1.35530 1.59223 0.97608 0.84986 0.79592 0.76577 0.78044 1.18425 1.22089 1.22110 1.21818 0.97101 0.93836 0.97370 1.22621 0.93185 1.02188 0.98805 1.22464 0.99021 0.99918 0.94324 1.22403 0.94371 1.01883 0.97268 1.22057 0.97888 1.02602 0.92000 0.90924 0.93461 0.89089 0.90581 0.95098 0.74548 0.92996 0.93146 0.94278 0.94283 0.79541 0.93918 0.91916 0.89590 0.91360 0.91571 0.89947 0.90808 0.90521 0.91810 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 10.28 71.98 0.74 -1.64 16 2 C 0.05 0.92 6.51 71.98 0.47 1.39 16 3 O -0.37 -9.11 8.65 -129.99 -1.12 -10.24 16 4 C 0.09 1.93 1.94 29.84 0.06 1.98 16 5 H 0.12 1.74 7.57 -2.38 -0.02 1.72 16 6 C 0.48 14.45 7.10 87.66 0.62 15.07 16 7 O -0.58 -23.39 16.51 15.94 0.26 -23.13 16 8 N -0.71 -19.21 5.14 -463.05 -2.38 -21.59 16 9 C 0.12 4.42 5.79 86.38 0.50 4.92 16 10 C 0.15 5.74 6.37 86.38 0.55 6.29 16 11 N -0.75 -38.25 5.60 -343.45 -1.92 -40.17 16 12 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 13 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 14 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 15 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 16 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 17 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 C -0.08 -1.47 2.69 -10.07 -0.03 -1.50 16 21 C -0.13 -1.85 4.57 31.67 0.14 -1.71 16 22 C -0.12 -1.37 6.91 31.89 0.22 -1.15 16 23 C -0.12 -1.26 6.83 31.67 0.22 -1.05 16 24 C -0.11 -1.52 6.17 31.32 0.19 -1.32 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.05 7.99 -2.38 -0.02 1.03 16 29 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.42 8.39 5.64 -92.71 -0.52 7.86 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.37 20.76 7.67 -92.71 -0.71 20.05 16 36 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 0.94 6.65 -2.39 -0.02 0.93 16 39 H 0.07 1.12 7.95 -2.39 -0.02 1.10 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.07 1.00 7.22 -2.39 -0.02 0.99 16 Total: -1.00 -73.35 361.29 1.87 -71.48 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: -0.27 Total: 31.42 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 4.99 Total: 4.50 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -4.02 Total: -121.73 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.86 Total: -33.37 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -73.35 1.87 -71.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131893197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.189 kcal (2) G-P(sol) polarization free energy of solvation -73.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds