Wall clock time and date at job start Tue Mar 31 2020 03:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36873 * 119.99501 * 2 1 4 4 H 1.08006 * 119.99534 * 202.87583 * 3 2 1 5 5 C 1.39049 * 120.00327 * 22.86590 * 3 2 1 6 6 N 1.31365 * 119.99757 * 17.27458 * 5 3 2 7 7 Si 1.86800 * 120.00094 * 197.27282 * 5 3 2 8 8 H 1.48493 * 109.47129 * 94.98695 * 7 5 3 9 9 H 1.48504 * 109.47036 * 214.98540 * 7 5 3 10 10 H 1.48497 * 109.47134 * 334.98073 * 7 5 3 11 11 C 1.34772 * 120.00348 * 180.02562 * 2 1 3 12 12 O 1.21595 * 119.99854 * 183.91422 * 11 2 1 13 13 C 1.47729 * 120.00125 * 3.91358 * 11 2 1 14 14 C 1.39679 * 120.14762 * 310.75260 * 13 11 2 15 15 C 1.37911 * 119.84371 * 180.27620 * 14 13 11 16 16 C 1.38403 * 120.15045 * 359.75100 * 15 14 13 17 17 C 1.38349 * 120.30769 * 359.97438 * 16 15 14 18 18 C 1.37960 * 120.15173 * 0.02562 * 17 16 15 19 19 S 1.76199 * 120.07980 * 179.97438 * 18 17 16 20 20 O 1.42103 * 106.39969 * 265.04096 * 19 18 17 21 21 O 1.42097 * 106.40883 * 132.12108 * 19 18 17 22 22 O 1.52201 * 107.21861 * 18.57917 * 19 18 17 23 23 H 1.09001 * 109.46967 * 274.83596 * 1 2 3 24 24 H 1.08993 * 109.47683 * 34.83909 * 1 2 3 25 25 H 1.09009 * 109.46830 * 154.83883 * 1 2 3 26 26 H 0.96994 * 120.00046 * 179.97438 * 6 5 3 27 27 H 1.07993 * 120.07573 * 0.02562 * 14 13 11 28 28 H 1.07999 * 119.92644 * 179.76641 * 15 14 13 29 29 H 1.08005 * 119.84301 * 179.97438 * 16 15 14 30 30 H 1.07999 * 119.92895 * 179.97438 * 17 16 15 31 31 H 0.96702 * 114.00246 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1656 1.2222 -0.3636 5 6 1.5359 2.3423 0.4679 6 7 0.4561 2.2585 1.2113 7 14 2.2475 4.0155 0.0395 8 1 1.5546 4.5563 -1.1573 9 1 2.0558 4.9426 1.1836 10 1 3.6978 3.8776 -0.2482 11 6 2.1389 -1.1671 -0.0005 12 8 3.3528 -1.1683 0.0714 13 6 1.4030 -2.4450 -0.0884 14 6 0.3173 -2.6888 0.7560 15 6 -0.3617 -3.8863 0.6725 16 6 0.0272 -4.8431 -0.2488 17 6 1.0980 -4.6059 -1.0921 18 6 1.7862 -3.4125 -1.0193 19 16 3.1501 -3.1126 -2.0938 20 8 4.3178 -3.4796 -1.3718 21 8 2.9512 -1.8173 -2.6432 22 8 3.0352 -4.0931 -3.2522 23 1 -0.3633 0.0866 1.0240 24 1 -0.3634 0.8434 -0.5870 25 1 -0.3633 -0.9302 -0.4370 26 1 0.0285 3.0655 1.5380 27 1 0.0130 -1.9430 1.4753 28 1 -1.1989 -4.0777 1.3273 29 1 -0.5079 -5.7794 -0.3097 30 1 1.3965 -5.3571 -1.8084 31 1 3.7423 -4.0130 -3.9070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189689894.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:44 Heat of formation + Delta-G solvation = -106.773859 kcal Electronic energy + Delta-G solvation = -21092.746601 eV Core-core repulsion = 17660.672777 eV Total energy + Delta-G solvation = -3432.073825 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.65408 -38.21549 -37.60537 -36.70580 -35.43481 -34.77379 -32.04209 -31.18208 -30.70051 -26.40182 -25.12727 -23.29392 -22.84648 -21.07067 -19.57939 -17.98689 -17.76260 -17.00272 -16.46967 -16.01132 -15.63424 -15.17297 -14.86713 -14.41281 -14.14175 -13.88639 -13.56597 -13.08593 -12.87699 -12.59194 -12.22492 -11.97168 -11.74958 -11.68012 -11.60128 -11.48161 -11.38563 -11.13501 -10.91905 -10.41576 -10.37485 -10.34962 -9.22988 -9.14108 -8.80240 -8.48940 -7.79126 -6.45152 -3.93739 0.69644 0.93498 1.32567 3.12307 3.23614 3.30457 3.34140 3.47554 3.71950 3.96774 4.07103 4.62047 4.81599 4.99433 5.07377 5.16793 5.32782 5.45628 5.53591 5.80211 5.93174 6.02074 6.19152 6.22937 6.36339 6.45708 6.73548 6.93260 7.05864 7.49152 8.00390 8.36952 9.05638 9.26766 9.81563 10.58093 Molecular weight = 285.05amu Principal moments of inertia in cm(-1) A = 0.021366 B = 0.006898 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.200911 B = 4058.225478 C = 5003.579098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.408 5.408 3 C -0.299 4.299 4 H 0.107 0.893 5 C 0.033 3.967 6 N -0.869 5.869 7 Si 0.930 3.070 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.265 1.265 11 C 0.446 3.554 12 O -0.576 6.576 13 C 0.016 3.984 14 C -0.114 4.114 15 C -0.073 4.073 16 C -0.141 4.141 17 C -0.041 4.041 18 C -0.636 4.636 19 S 2.718 3.282 20 O -0.950 6.950 21 O -0.946 6.946 22 O -0.908 6.908 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.037 0.963 26 H 0.271 0.729 27 H 0.142 0.858 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.137 0.863 31 H 0.456 0.544 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -12.298 -5.927 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.122 5.122 3 C -0.427 4.427 4 H 0.125 0.875 5 C -0.172 4.172 6 N -0.507 5.507 7 Si 0.756 3.244 8 H -0.201 1.201 9 H -0.208 1.208 10 H -0.189 1.189 11 C 0.234 3.766 12 O -0.463 6.463 13 C 0.011 3.989 14 C -0.134 4.134 15 C -0.091 4.091 16 C -0.161 4.161 17 C -0.060 4.060 18 C -0.723 4.723 19 S 2.806 3.194 20 O -0.949 6.949 21 O -0.944 6.944 22 O -0.776 6.776 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.160 0.840 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.325 0.675 Dipole moment (debyes) X Y Z Total from point charges -3.581 -12.022 -5.806 13.823 hybrid contribution -0.298 0.713 0.136 0.784 sum -3.879 -11.310 -5.670 13.233 Atomic orbital electron populations 1.21834 0.81125 0.99332 1.02473 1.43423 1.05668 1.04578 1.58560 1.19831 1.00329 0.83185 1.39397 0.87504 1.25437 0.96582 1.00456 0.94729 1.69978 1.20492 1.30004 1.30209 0.85836 0.79915 0.80571 0.78055 1.20150 1.20825 1.18920 1.17967 0.87800 0.83102 0.87751 1.90732 1.12493 1.85985 1.57107 1.19992 0.93012 0.93932 0.92003 1.21646 0.94566 0.97863 0.99277 1.21362 0.98305 0.92824 0.96640 1.21244 0.97982 0.99808 0.97028 1.20765 0.93977 0.94004 0.97234 1.30450 1.22282 1.02659 1.16920 1.00907 0.73560 0.71776 0.73195 1.93613 1.46048 1.82053 1.73173 1.93657 1.85454 1.38525 1.76785 1.85500 1.63178 1.77706 1.51215 0.91224 0.91542 0.94423 0.91881 0.84044 0.85060 0.85262 0.84571 0.67536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.18 7.39 59.85 0.44 2.62 16 2 N -0.41 -10.95 3.01 -123.31 -0.37 -11.32 16 3 C -0.30 -8.59 9.22 -15.00 -0.14 -8.73 16 4 H 0.11 3.23 7.48 -52.48 -0.39 2.84 16 5 C 0.03 0.87 5.01 -17.45 -0.09 0.79 16 6 N -0.87 -22.81 10.95 55.50 0.61 -22.20 16 7 Si 0.93 20.81 29.59 -169.99 -5.03 15.78 16 8 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 C 0.45 11.81 5.78 -12.38 -0.07 11.74 16 12 O -0.58 -17.13 14.83 -11.73 -0.17 -17.31 16 13 C 0.02 0.34 4.88 -104.97 -0.51 -0.18 16 14 C -0.11 -2.00 7.60 -39.16 -0.30 -2.29 16 15 C -0.07 -0.98 10.03 -39.64 -0.40 -1.38 16 16 C -0.14 -1.77 10.04 -39.48 -0.40 -2.17 16 17 C -0.04 -0.59 9.55 -39.64 -0.38 -0.97 16 18 C -0.64 -11.90 5.87 -39.17 -0.23 -12.13 16 19 S 2.72 49.65 4.51 -107.50 -0.48 49.17 16 20 O -0.95 -20.25 17.61 -67.97 -1.20 -21.45 16 21 O -0.95 -20.89 16.46 -68.73 -1.13 -22.03 16 22 O -0.91 -10.46 12.64 -67.36 -0.85 -11.31 16 23 H 0.07 1.57 6.87 -51.93 -0.36 1.21 16 24 H 0.07 1.55 7.42 -51.93 -0.39 1.17 16 25 H 0.04 0.74 5.58 -51.92 -0.29 0.45 16 26 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 27 H 0.14 2.43 6.66 -52.49 -0.35 2.08 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.14 1.47 7.52 -52.49 -0.39 1.08 16 31 H 0.46 2.58 9.03 67.38 0.61 3.19 16 LS Contribution 281.27 15.07 4.24 4.24 Total: -1.00 -38.22 281.27 -8.00 -46.22 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -1.54 Total: 2.91 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -2.07 Total: -12.70 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.24 Total: -33.53 kcal Atomic # 8 Polarization: -68.74 SS G_CDS: -3.35 Total: -72.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 16 Polarization: 49.65 SS G_CDS: -0.48 Total: 49.17 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -38.22 -8.00 -46.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189689894.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.557 kcal (2) G-P(sol) polarization free energy of solvation -38.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds