Wall clock time and date at job start Tue Mar 31 2020 04:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21282 * 119.99892 * 2 1 4 4 N 1.34777 * 120.00068 * 180.02562 * 2 1 3 5 5 C 1.39628 * 119.99819 * 185.00328 * 4 2 1 6 6 C 1.39014 * 119.61474 * 174.78035 * 5 4 2 7 7 C 1.38314 * 119.17978 * 179.97438 * 6 5 4 8 8 C 1.39400 * 118.43289 * 0.02562 * 7 6 5 9 9 N 1.39934 * 120.42053 * 180.02562 * 8 7 6 10 10 S 1.65591 * 120.00507 * 133.83798 * 9 8 7 11 11 O 1.42105 * 106.39942 * 51.94188 * 10 9 8 12 12 O 1.42100 * 106.40631 * 184.86239 * 10 9 8 13 13 C 1.76203 * 107.22175 * 298.40587 * 10 9 8 14 14 H 1.08010 * 119.99488 * 4.89751 * 13 10 9 15 15 C 1.37870 * 120.00499 * 184.89646 * 13 10 9 16 16 N 1.31515 * 119.99761 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00372 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46860 * 90.00050 * 17 15 13 19 19 H 1.48494 * 109.47354 * 210.00466 * 17 15 13 20 20 H 1.48509 * 109.46930 * 330.00521 * 17 15 13 21 21 C 1.38722 * 119.16318 * 359.97438 * 8 7 6 22 22 N 1.31926 * 120.74233 * 0.02562 * 21 8 7 23 23 H 1.09001 * 109.46778 * 239.99715 * 1 2 3 24 24 H 1.08996 * 109.47302 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47579 * 120.00330 * 1 2 3 26 26 H 0.97001 * 120.00001 * 4.99432 * 4 2 1 27 27 H 1.07998 * 120.40904 * 0.24282 * 6 5 4 28 28 H 1.07995 * 120.78210 * 180.02562 * 7 6 5 29 29 H 0.97005 * 119.99367 * 313.84129 * 9 8 7 30 30 H 0.97002 * 119.99894 * 179.97438 * 16 15 13 31 31 H 1.07995 * 119.62955 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5732 -1.1695 0.1049 6 6 4.2519 -2.3778 0.2133 7 6 5.6312 -2.3696 0.3168 8 6 6.2901 -1.1412 0.3087 9 7 7.6846 -1.0845 0.4104 10 16 8.5502 -0.1078 -0.6088 11 8 7.9624 1.1832 -0.5227 12 8 9.9220 -0.3570 -0.3346 13 6 8.2592 -0.6784 -2.2503 14 1 7.5497 -1.4731 -2.4279 15 6 8.9372 -0.1104 -3.3080 16 7 9.8015 0.8569 -3.0916 17 14 8.6292 -0.7159 -5.0481 18 1 7.5252 0.0688 -5.6570 19 1 9.8626 -0.5453 -5.8571 20 1 8.2547 -2.1525 -5.0133 21 6 5.5460 0.0243 0.1974 22 7 4.2311 -0.0217 0.1005 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3634 1.0276 0.0005 25 1 -0.3634 -0.5139 -0.8899 26 1 1.6987 -2.0056 -0.0740 27 1 3.7093 -3.3116 0.2124 28 1 6.1845 -3.2931 0.4018 29 1 8.1442 -1.6174 1.0781 30 1 10.2787 1.2563 -3.8357 31 1 6.0487 0.9801 0.1907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935113.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:54 Heat of formation + Delta-G solvation = -75.703913 kcal Electronic energy + Delta-G solvation = -20154.494034 eV Core-core repulsion = 16756.060254 eV Total energy + Delta-G solvation = -3398.433780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.062 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56330 -38.91895 -35.66253 -35.23340 -34.12412 -33.84381 -33.12402 -31.76663 -30.28574 -27.64118 -26.18976 -23.82701 -22.65554 -20.52444 -19.18265 -18.10062 -17.78182 -17.21111 -16.70365 -16.30477 -15.47664 -15.22214 -15.01300 -14.35948 -14.04478 -13.86631 -13.66519 -13.54035 -13.14052 -12.69072 -12.61690 -12.34912 -12.08187 -11.35024 -11.24447 -11.20077 -10.63843 -10.52649 -10.43076 -10.32629 -10.13407 -9.80383 -9.44172 -9.28597 -8.90050 -8.77327 -7.60623 -6.75039 -5.38196 1.31840 1.56535 2.14537 2.74193 2.92567 3.05846 3.12408 3.17920 4.01515 4.16360 4.45975 4.54324 4.62475 4.89140 5.05099 5.11191 5.16068 5.23541 5.29144 5.57098 5.65296 5.85606 5.96223 6.18361 6.39332 6.50404 6.80129 7.01925 7.22408 7.27799 7.69053 7.90824 8.12709 8.49951 8.83710 10.19175 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.020259 B = 0.005327 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.761954 B = 5254.587303 C = 5770.928219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.494 3.506 3 O -0.473 6.473 4 N -0.664 5.664 5 C 0.325 3.675 6 C -0.190 4.190 7 C -0.075 4.075 8 C 0.100 3.900 9 N -1.069 6.069 10 S 2.703 3.297 11 O -0.996 6.996 12 O -0.992 6.992 13 C -1.014 5.014 14 H 0.103 0.897 15 C 0.134 3.866 16 N -0.842 5.842 17 Si 0.922 3.078 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.263 1.263 21 C 0.110 3.890 22 N -0.453 5.453 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.414 0.586 27 H 0.134 0.866 28 H 0.141 0.859 29 H 0.412 0.588 30 H 0.292 0.708 31 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.458 -9.386 5.391 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.279 3.721 3 O -0.342 6.342 4 N -0.312 5.312 5 C 0.094 3.906 6 C -0.214 4.214 7 C -0.105 4.105 8 C 0.000 4.000 9 N -0.814 5.814 10 S 2.804 3.196 11 O -0.986 6.986 12 O -0.983 6.983 13 C -1.148 5.148 14 H 0.121 0.879 15 C -0.084 4.084 16 N -0.472 5.472 17 Si 0.746 3.254 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.187 1.187 21 C -0.051 4.051 22 N -0.167 5.167 23 H 0.106 0.894 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.250 0.750 27 H 0.152 0.848 28 H 0.158 0.842 29 H 0.246 0.754 30 H 0.103 0.897 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -14.916 -6.784 5.458 17.271 hybrid contribution 0.052 -2.370 -1.084 2.607 sum -14.864 -9.154 4.374 17.996 Atomic orbital electron populations 1.21927 0.91210 1.05777 1.04115 1.21038 0.90501 0.83607 0.76924 1.90887 1.69927 1.30341 1.43043 1.43606 1.04104 1.10400 1.73100 1.18512 0.84465 0.90223 0.97441 1.21237 0.94575 0.97095 1.08507 1.21383 0.93602 0.97563 0.97918 1.18468 0.84499 0.94331 1.02734 1.54026 1.11685 1.64684 1.50981 1.00984 0.71513 0.72437 0.74663 1.93337 1.78012 1.39271 1.87988 1.93395 1.32993 1.85371 1.86495 1.30375 1.36605 1.33550 1.14280 0.87908 1.24728 0.90659 0.91573 1.01478 1.69888 1.21147 1.20657 1.35483 0.86134 0.78748 0.80074 0.80479 1.19073 1.19839 1.18659 1.23770 0.87909 0.99373 0.94044 1.67726 1.08895 1.26337 1.13755 0.89424 0.88720 0.89410 0.75047 0.84832 0.84152 0.75421 0.89726 0.79229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.32 36.01 0.37 -0.82 16 2 C 0.49 6.41 7.90 -10.98 -0.09 6.33 16 3 O -0.47 -8.98 15.35 5.56 0.09 -8.90 16 4 N -0.66 -7.66 5.40 -11.39 -0.06 -7.72 16 5 C 0.32 5.11 7.42 -154.54 -1.15 3.96 16 6 C -0.19 -2.47 9.93 -39.27 -0.39 -2.86 16 7 C -0.07 -1.11 10.10 -39.12 -0.40 -1.50 16 8 C 0.10 1.89 6.16 -83.55 -0.52 1.37 16 9 N -1.07 -21.00 5.79 32.52 0.19 -20.81 16 10 S 2.70 70.45 4.95 -107.50 -0.53 69.91 16 11 O -1.00 -28.24 15.18 -57.17 -0.87 -29.11 16 12 O -0.99 -28.35 17.91 -57.17 -1.02 -29.38 16 13 C -1.01 -27.84 9.61 30.60 0.29 -27.54 16 14 H 0.10 2.62 7.81 -52.48 -0.41 2.21 16 15 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 16 N -0.84 -24.61 13.10 55.43 0.73 -23.88 16 17 Si 0.92 20.74 29.54 -169.99 -5.02 15.72 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 21 C 0.11 2.32 10.40 -17.33 -0.18 2.14 16 22 N -0.45 -9.16 7.88 -12.17 -0.10 -9.25 16 23 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.09 0.70 8.12 -51.93 -0.42 0.28 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.41 2.67 8.70 -40.82 -0.36 2.32 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.41 6.60 8.96 -34.47 -0.31 6.30 16 30 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.19 4.40 5.72 -52.49 -0.30 4.10 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -39.07 293.76 -6.94 -46.02 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -2.62 Total: 8.27 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -2.15 Total: -15.29 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 0.76 Total: -61.67 kcal Atomic # 8 Polarization: -65.57 SS G_CDS: -1.81 Total: -67.38 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 70.45 SS G_CDS: -0.53 Total: 69.91 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -39.07 -6.94 -46.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935113.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.687 kcal (2) G-P(sol) polarization free energy of solvation -39.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds