Wall clock time and date at job start Tue Mar 31 2020 04:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99882 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40416 * 293.54030 * 9 7 2 11 11 O 1.42097 * 106.40207 * 66.46151 * 9 7 2 12 12 N 1.65598 * 107.21820 * 179.97438 * 9 7 2 13 13 C 1.46932 * 120.63329 * 269.71937 * 12 9 7 14 14 C 1.53620 * 108.54377 * 126.36774 * 13 12 9 15 15 H 1.09005 * 109.66048 * 294.85442 * 14 13 12 16 16 C 1.53003 * 109.43274 * 174.72637 * 14 13 12 17 17 O 1.42900 * 109.47304 * 175.28910 * 16 14 13 18 18 C 1.53045 * 109.23919 * 54.85705 * 14 13 12 19 19 C 1.53032 * 109.53861 * 298.50805 * 18 14 13 20 20 F 1.39895 * 109.50409 * 301.41400 * 19 18 14 21 21 F 1.39904 * 109.49550 * 181.31766 * 19 18 14 22 22 C 1.46932 * 120.63299 * 90.00227 * 12 9 7 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.58821 * 246.20361 * 13 12 9 25 25 H 1.09003 * 109.58279 * 6.62432 * 13 12 9 26 26 H 1.08998 * 109.47129 * 295.28993 * 16 14 13 27 27 H 1.08999 * 109.46681 * 55.28505 * 16 14 13 28 28 H 0.96698 * 113.99983 * 180.02562 * 17 16 14 29 29 H 1.09007 * 109.45912 * 178.48644 * 18 14 13 30 30 H 1.08996 * 109.46161 * 58.53784 * 18 14 13 31 31 H 1.09006 * 109.58237 * 353.37137 * 22 12 9 32 32 H 1.08996 * 109.58861 * 113.79215 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7199 0.0005 10 8 0.4510 -2.7950 1.2500 11 8 0.4520 -2.7955 -1.2494 12 7 2.2484 -3.9353 0.0005 13 6 2.7523 -4.4890 -1.2637 14 6 4.2870 -4.4205 -1.2498 15 1 4.6075 -3.3786 -1.2385 16 6 4.8387 -5.1110 -2.4987 17 8 6.2582 -4.9526 -2.5427 18 6 4.8121 -5.1300 0.0004 19 6 4.2873 -4.4200 1.2504 20 9 4.6980 -3.0828 1.2351 21 9 4.7921 -5.0511 2.3924 22 6 2.7569 -4.4848 1.2648 23 1 -0.4850 -0.8401 -0.0004 24 1 2.4310 -5.5258 -1.3624 25 1 2.3665 -3.9037 -2.0984 26 1 4.5924 -6.1722 -2.4658 27 1 4.3952 -4.6624 -3.3876 28 1 6.6765 -5.3662 -3.3103 29 1 5.9019 -5.1070 0.0002 30 1 4.4712 -6.1653 0.0006 31 1 2.3741 -3.8967 2.0990 32 1 2.4358 -5.5213 1.3681 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951142.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:54 Heat of formation + Delta-G solvation = -247.707515 kcal Electronic energy + Delta-G solvation = -22339.639542 eV Core-core repulsion = 18483.057940 eV Total energy + Delta-G solvation = -3856.581602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.69663 -46.68670 -38.47437 -36.41194 -35.74442 -34.52168 -33.27798 -32.46773 -30.48478 -26.24089 -25.57870 -24.38523 -22.10502 -20.28376 -19.26144 -18.19654 -17.55818 -16.78857 -16.69497 -16.47296 -16.34904 -15.18812 -14.79268 -14.60441 -14.08064 -13.96420 -13.69725 -13.65852 -13.28053 -13.13122 -13.03834 -12.56044 -12.37685 -12.17158 -11.71128 -11.21138 -11.14235 -11.08391 -11.05097 -10.87057 -10.72736 -10.53506 -10.32110 -10.28731 -10.10113 -9.19329 -8.98893 -8.32991 -7.19789 -5.41276 1.85660 3.24361 3.25867 3.47295 3.80327 3.90104 4.06856 4.18557 4.28064 4.47578 4.56990 4.68893 4.99446 5.08992 5.14519 5.29553 5.33426 5.40415 5.49994 5.56272 5.67771 5.71695 5.77592 5.96253 6.01835 6.27480 6.31434 7.08724 7.47916 7.61693 8.06831 8.59079 10.17794 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.007306 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.202981 B = 3831.648521 C = 3936.475659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.092 3.908 3 Si 1.079 2.921 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.275 1.275 7 C -1.078 5.078 8 H 0.107 0.893 9 S 2.687 3.313 10 O -1.005 7.005 11 O -1.003 7.003 12 N -0.998 5.998 13 C 0.128 3.872 14 C -0.105 4.105 15 H 0.099 0.901 16 C 0.085 3.915 17 O -0.571 6.571 18 C -0.144 4.144 19 C 0.274 3.726 20 F -0.187 7.187 21 F -0.202 7.202 22 C 0.093 3.907 23 H 0.274 0.726 24 H 0.069 0.931 25 H 0.103 0.897 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.378 0.622 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.279 -11.173 -3.446 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.127 4.127 3 Si 0.902 3.098 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.200 1.200 7 C -1.214 5.214 8 H 0.126 0.874 9 S 2.790 3.210 10 O -0.995 6.995 11 O -0.994 6.994 12 N -0.831 5.831 13 C 0.002 3.998 14 C -0.126 4.126 15 H 0.117 0.883 16 C 0.007 3.993 17 O -0.377 6.377 18 C -0.182 4.182 19 C 0.235 3.765 20 F -0.168 7.168 21 F -0.183 7.183 22 C -0.035 4.035 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.121 0.879 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.225 0.775 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.133 0.867 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.981 -9.427 -2.858 13.330 hybrid contribution 1.069 -1.681 -0.336 2.020 sum 10.049 -11.108 -3.194 15.316 Atomic orbital electron populations 1.70879 1.07185 1.31816 1.37539 1.25979 0.95060 1.03931 0.87705 0.83459 0.75296 0.73214 0.77871 1.19646 1.19964 1.20028 1.31440 1.08290 1.11936 1.69704 0.87430 1.01309 0.72683 0.73954 0.73049 1.93422 1.73042 1.87654 1.45405 1.93419 1.72960 1.87683 1.45307 1.57991 1.61478 1.54848 1.08793 1.21373 0.91622 1.00017 0.86820 1.21647 0.95735 1.02250 0.92925 0.88266 1.22082 0.81156 0.98773 0.97323 1.86498 1.20186 1.80721 1.50259 1.22425 1.03250 1.00173 0.92337 1.21513 0.94490 0.76451 0.84002 1.93055 1.91820 1.35243 1.96654 1.92981 1.89139 1.82302 1.53927 1.22102 0.89911 1.02494 0.89025 0.91352 0.91308 0.87919 0.93284 0.92570 0.77504 0.88832 0.89154 0.86747 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.71 13.66 55.43 0.76 -24.96 16 2 C 0.09 2.61 5.46 -17.82 -0.10 2.51 16 3 Si 1.08 24.31 29.90 -169.99 -5.08 19.23 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -1.08 -29.70 9.74 30.60 0.30 -29.40 16 8 H 0.11 2.81 7.81 -52.48 -0.41 2.40 16 9 S 2.69 68.79 4.33 -107.50 -0.47 68.33 16 10 O -1.01 -28.08 16.36 -57.17 -0.94 -29.02 16 11 O -1.00 -27.47 16.35 -57.17 -0.93 -28.40 16 12 N -1.00 -19.32 3.26 -113.26 -0.37 -19.69 16 13 C 0.13 1.98 5.69 -3.48 -0.02 1.96 16 14 C -0.11 -1.46 2.48 -90.27 -0.22 -1.68 16 15 H 0.10 1.62 7.74 -51.93 -0.40 1.22 16 16 C 0.09 0.88 6.43 37.16 0.24 1.12 16 17 O -0.57 -6.06 13.17 -35.23 -0.46 -6.53 16 18 C -0.14 -1.89 4.62 -26.69 -0.12 -2.02 16 19 C 0.27 4.41 2.14 -26.62 -0.06 4.35 16 20 F -0.19 -3.60 16.46 2.25 0.04 -3.57 16 21 F -0.20 -3.16 17.07 2.25 0.04 -3.12 16 22 C 0.09 1.58 5.86 -3.71 -0.02 1.55 16 23 H 0.27 8.54 6.52 -40.82 -0.27 8.28 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.10 1.69 7.12 -51.93 -0.37 1.32 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.38 2.12 9.12 45.56 0.42 2.54 16 29 H 0.09 1.22 7.79 -51.93 -0.40 0.82 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.11 2.13 7.13 -51.93 -0.37 1.76 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 288.23 15.07 4.34 4.34 Total: -1.00 -35.36 288.23 -5.80 -41.16 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -2.72 Total: 3.82 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -0.01 Total: -21.60 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.39 Total: -44.64 kcal Atomic # 8 Polarization: -61.61 SS G_CDS: -2.33 Total: -63.94 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 0.08 Total: -6.69 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.23 kcal Atomic # 16 Polarization: 68.79 SS G_CDS: -0.47 Total: 68.33 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -35.36 -5.80 -41.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951142.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.551 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds