Wall clock time and date at job start Tue Mar 31 2020 03:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99631 * 2 1 4 4 H 1.48497 * 109.46987 * 269.99813 * 3 2 1 5 5 H 1.48500 * 109.47244 * 29.99921 * 3 2 1 6 6 H 1.48498 * 109.46529 * 150.00048 * 3 2 1 7 7 C 1.37873 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99637 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00184 * 180.02562 * 7 2 1 10 10 O 1.42096 * 106.40321 * 66.45945 * 9 7 2 11 11 O 1.42108 * 106.39883 * 293.53953 * 9 7 2 12 12 N 1.65597 * 107.22117 * 180.02562 * 9 7 2 13 13 C 1.38364 * 119.99796 * 64.71984 * 12 9 7 14 14 N 1.32860 * 120.72922 * 0.02562 * 13 12 9 15 15 C 1.32530 * 121.14092 * 179.73558 * 14 13 12 16 16 O 1.35506 * 118.84438 * 180.28163 * 15 14 13 17 17 N 1.32146 * 122.31075 * 0.56660 * 15 14 13 18 18 C 1.32932 * 120.59086 * 359.71796 * 17 15 14 19 19 N 1.37189 * 134.84109 * 180.02562 * 18 17 15 20 20 H 0.97001 * 126.28021 * 359.92949 * 19 18 17 21 21 C 1.36420 * 107.44119 * 179.97438 * 19 18 17 22 22 N 1.30097 * 109.96279 * 359.97438 * 21 19 18 23 23 C 1.35566 * 109.43715 * 359.97438 * 22 21 19 24 24 H 0.96998 * 119.99908 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00224 * 245.00409 * 12 9 7 26 26 H 0.96697 * 114.00198 * 270.27525 * 16 15 14 27 27 H 1.08002 * 125.01905 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 16 3.7666 -1.1940 0.0012 10 8 4.1674 -0.6493 1.2509 11 8 4.1683 -0.6498 -1.2486 12 7 4.2569 -2.7757 0.0011 13 6 3.9733 -3.5878 -1.0828 14 7 3.3091 -3.1134 -2.1311 15 6 3.0376 -3.8825 -3.1757 16 8 2.3624 -3.3489 -4.2224 17 7 3.3975 -5.1528 -3.2301 18 6 4.0611 -5.7117 -2.2229 19 7 4.5651 -6.9628 -1.9724 20 1 4.5103 -7.7321 -2.5607 21 6 5.1565 -6.9268 -0.7436 22 7 5.0453 -5.7359 -0.2318 23 6 4.3778 -4.9336 -1.0970 24 1 -0.4850 0.8400 -0.0004 25 1 4.7392 -3.1341 0.7625 26 1 1.4012 -3.4269 -4.1513 27 1 5.6457 -7.7632 -0.2665 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192996682.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:47 Heat of formation + Delta-G solvation = -37.748760 kcal Electronic energy + Delta-G solvation = -20439.057954 eV Core-core repulsion = 16938.729690 eV Total energy + Delta-G solvation = -3500.328264 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 285.036 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.68432 -40.87396 -38.56032 -37.76435 -36.69969 -36.62348 -35.18321 -33.94955 -33.21676 -30.15332 -28.58686 -25.48127 -24.96201 -22.74105 -21.50877 -21.05070 -20.23176 -19.60261 -18.81761 -18.44083 -18.08713 -17.36942 -17.23132 -16.39616 -16.08884 -15.97171 -15.51820 -15.36989 -15.03265 -14.50378 -13.86899 -13.42935 -13.28931 -13.12328 -13.04882 -12.89389 -12.76550 -12.61822 -11.94241 -11.77518 -11.58504 -11.31830 -11.12018 -10.70715 -10.30588 -9.38778 -8.94419 -7.49421 -0.54551 -0.21394 0.00528 1.06100 1.17100 1.20191 1.22902 1.67149 1.84324 1.91024 2.29984 2.44048 2.54449 2.82287 3.09192 3.21691 3.41538 3.93032 4.05034 4.18009 4.54884 4.80773 4.99582 5.32810 5.38016 5.77739 6.00422 6.27392 6.47710 6.53043 6.64849 6.88821 8.23190 Molecular weight = 285.04amu Principal moments of inertia in cm(-1) A = 0.025062 B = 0.006779 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.950659 B = 4129.653970 C = 4737.340458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.115 3.885 3 Si 0.823 3.177 4 H -0.241 1.241 5 H -0.216 1.216 6 H -0.230 1.230 7 C -1.007 5.007 8 H 0.102 0.898 9 S 2.682 3.318 10 O -1.009 7.009 11 O -0.996 6.996 12 N -1.005 6.005 13 C 0.499 3.501 14 N -0.584 5.584 15 C 0.546 3.454 16 O -0.454 6.454 17 N -0.547 5.547 18 C 0.305 3.695 19 N -0.558 5.558 20 H 0.453 0.547 21 C 0.305 3.695 22 N -0.501 5.501 23 C -0.102 4.102 24 H 0.292 0.708 25 H 0.446 0.554 26 H 0.432 0.568 27 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 -17.044 -2.820 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.102 4.102 3 Si 0.640 3.360 4 H -0.164 1.164 5 H -0.138 1.138 6 H -0.153 1.153 7 C -1.141 5.141 8 H 0.120 0.880 9 S 2.783 3.217 10 O -0.999 6.999 11 O -0.985 6.985 12 N -0.751 5.751 13 C 0.249 3.751 14 N -0.320 5.320 15 C 0.238 3.762 16 O -0.260 6.260 17 N -0.283 5.283 18 C 0.059 3.941 19 N -0.176 5.176 20 H 0.298 0.702 21 C 0.018 3.982 22 N -0.221 5.221 23 C -0.228 4.228 24 H 0.103 0.897 25 H 0.286 0.714 26 H 0.295 0.705 27 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges 8.258 -15.233 -3.138 17.610 hybrid contribution -0.969 -0.450 -0.026 1.069 sum 7.289 -15.683 -3.164 17.582 Atomic orbital electron populations 1.69987 1.07216 1.30457 1.40233 1.25029 0.95622 1.01023 0.88552 0.87525 0.82853 0.83022 0.82568 1.16411 1.13773 1.15300 1.30342 1.15782 1.01660 1.66296 0.87984 1.01291 0.76987 0.70543 0.72836 1.93494 1.85569 1.75250 1.45593 1.93434 1.84746 1.75302 1.45065 1.53334 1.66653 1.30920 1.24190 1.17188 0.86757 0.85596 0.85523 1.67549 1.21667 1.40408 1.02388 1.19312 0.90860 0.82078 0.83902 1.84665 1.25989 1.78904 1.36439 1.66734 1.20308 1.11805 1.29451 1.18582 0.95839 0.89047 0.90638 1.42851 1.46646 1.08458 1.19671 0.70176 1.26920 0.93197 0.97258 0.80868 1.70286 1.19623 1.02530 1.29625 1.19688 1.10663 0.94720 0.97775 0.89740 0.71448 0.70500 0.68885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.22 13.96 21.45 0.30 -48.92 15 2 C 0.11 6.68 5.47 84.65 0.46 7.14 15 3 Si 0.82 41.63 26.54 68.60 1.82 43.45 15 4 H -0.24 -11.97 7.11 99.48 0.71 -11.26 15 5 H -0.22 -9.50 7.11 99.48 0.71 -8.80 15 6 H -0.23 -11.91 5.61 99.48 0.56 -11.35 15 7 C -1.01 -58.15 9.89 67.73 0.67 -57.48 15 8 H 0.10 6.10 8.06 -2.91 -0.02 6.08 15 9 S 2.68 140.15 3.88 -56.49 -0.22 139.93 15 10 O -1.01 -54.27 16.02 -128.00 -2.05 -56.32 15 11 O -1.00 -56.08 15.75 -128.00 -2.02 -58.10 15 12 N -1.01 -42.62 5.83 -54.68 -0.32 -42.94 15 13 C 0.50 20.82 7.38 133.49 0.99 21.80 15 14 N -0.58 -26.40 8.54 -310.27 -2.65 -29.05 15 15 C 0.55 21.04 8.68 180.56 1.57 22.61 15 16 O -0.45 -15.44 13.64 -88.08 -1.20 -16.64 15 17 N -0.55 -17.95 10.49 -311.37 -3.27 -21.22 15 18 C 0.31 8.65 8.50 133.84 1.14 9.79 15 19 N -0.56 -8.04 6.20 -195.80 -1.21 -9.26 15 20 H 0.45 2.60 8.96 -92.71 -0.83 1.77 15 21 C 0.31 3.72 12.99 179.93 2.34 6.06 15 22 N -0.50 -12.55 11.28 -191.29 -2.16 -14.71 15 23 C -0.10 -3.38 7.16 39.67 0.28 -3.10 15 24 H 0.29 15.22 8.31 -92.71 -0.77 14.45 15 25 H 0.45 15.79 8.85 -96.74 -0.86 14.93 15 26 H 0.43 10.22 9.06 -74.06 -0.67 9.55 15 27 H 0.30 -0.75 8.06 -2.91 -0.02 -0.77 15 Total: -1.00 -85.64 263.33 -6.74 -92.37 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -1.20 Total: 14.60 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 7.45 Total: 6.81 kcal Atomic # 7 Polarization: -156.79 SS G_CDS: -9.31 Total: -166.10 kcal Atomic # 8 Polarization: -125.80 SS G_CDS: -5.27 Total: -131.07 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.82 Total: 43.45 kcal Atomic # 16 Polarization: 140.15 SS G_CDS: -0.22 Total: 139.93 kcal Total: -85.64 -6.74 -92.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192996682.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.624 kcal (2) G-P(sol) polarization free energy of solvation -85.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds