Wall clock time and date at job start Tue Mar 31 2020 03:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99668 * 2 1 4 4 C 1.53006 * 109.46379 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47211 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47307 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99775 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99949 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99979 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.49718 * 324.94493 * 10 9 7 12 12 C 1.53101 * 109.51951 * 204.87321 * 10 9 7 13 13 C 1.53035 * 109.50440 * 178.68297 * 12 10 9 14 14 C 1.53198 * 109.33853 * 61.35218 * 13 12 10 15 15 N 1.46931 * 108.77053 * 305.34533 * 14 13 12 16 16 C 1.36934 * 120.62746 * 233.58525 * 15 14 13 17 17 H 1.07998 * 120.00350 * 27.69174 * 16 15 14 18 18 C 1.38818 * 120.00071 * 207.68722 * 16 15 14 19 19 N 1.31620 * 119.99342 * 17.37025 * 18 16 15 20 20 Si 1.86795 * 120.00018 * 197.36882 * 18 16 15 21 21 H 1.48501 * 109.47045 * 90.00300 * 20 18 16 22 22 H 1.48505 * 109.46933 * 210.00082 * 20 18 16 23 23 H 1.48491 * 109.47501 * 330.00079 * 20 18 16 24 24 C 1.46923 * 118.73939 * 53.61014 * 15 14 13 25 25 H 1.09000 * 109.47650 * 59.99952 * 1 2 3 26 26 H 1.08993 * 109.47566 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46776 * 300.00252 * 1 2 3 28 28 H 1.08994 * 109.47787 * 60.00469 * 3 2 1 29 29 H 1.09003 * 109.46822 * 299.99557 * 3 2 1 30 30 H 1.09000 * 109.47237 * 60.00040 * 4 3 2 31 31 H 1.09003 * 109.47079 * 299.99152 * 4 3 2 32 32 H 1.09000 * 109.47106 * 59.99526 * 5 4 3 33 33 H 1.08999 * 109.47022 * 300.00213 * 5 4 3 34 34 H 1.09000 * 109.47312 * 59.99849 * 6 5 4 35 35 H 1.08999 * 109.47463 * 300.00140 * 6 5 4 36 36 H 0.96995 * 120.00798 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.50336 * 58.65637 * 12 10 9 38 38 H 1.08996 * 109.44892 * 298.68006 * 12 10 9 39 39 H 1.08996 * 109.50305 * 301.38333 * 13 12 10 40 40 H 1.09008 * 109.49744 * 181.31473 * 13 12 10 41 41 H 1.08992 * 109.58883 * 65.13140 * 14 13 12 42 42 H 1.08997 * 109.58537 * 185.55976 * 14 13 12 43 43 H 0.97004 * 119.99493 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.58575 * 66.17336 * 24 15 14 45 45 H 1.08997 * 109.58439 * 186.60116 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5824 -0.0013 6 6 5.6830 2.4616 -0.0013 7 6 6.2960 3.8382 -0.0026 8 8 5.5831 4.8194 -0.0029 9 7 7.6363 3.9790 -0.0023 10 6 8.2323 5.3174 -0.0041 11 1 7.6121 5.9910 -0.5955 12 6 9.6365 5.2513 -0.6104 13 6 10.2459 6.6547 -0.6422 14 6 10.3613 7.1902 0.7884 15 7 9.0399 7.1212 1.4271 16 6 8.4858 8.2318 2.0056 17 1 8.7463 9.2157 1.6445 18 6 7.5891 8.0930 3.0562 19 7 7.5245 6.9586 3.7206 20 14 6.4744 9.5161 3.5268 21 1 5.2061 9.4261 2.7596 22 1 6.1788 9.4534 4.9808 23 1 7.1519 10.7999 3.2144 24 6 8.3247 5.8378 1.4338 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6885 1.8463 -0.8901 30 1 3.8567 0.6438 -0.8909 31 1 3.8574 0.6436 0.8892 32 1 3.8365 3.1236 0.8886 33 1 3.8358 3.1231 -0.8912 34 1 6.0046 1.9202 -0.8910 35 1 6.0047 1.9210 0.8889 36 1 8.2065 3.1944 -0.0016 37 1 9.5766 4.8583 -1.6253 38 1 10.2631 4.5969 -0.0043 39 1 9.6069 7.3157 -1.2277 40 1 11.2365 6.6110 -1.0953 41 1 11.0708 6.5826 1.3500 42 1 10.7021 8.2253 0.7647 43 1 6.8976 6.8615 4.4545 44 1 8.8682 5.1198 2.0480 45 1 7.3217 5.9806 1.8359 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267609789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:28 Heat of formation + Delta-G solvation = -84.379310 kcal Electronic energy + Delta-G solvation = -22794.632096 eV Core-core repulsion = 19425.994446 eV Total energy + Delta-G solvation = -3368.637650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -39.47953 -38.18175 -37.32006 -34.75747 -34.01676 -32.63997 -30.36998 -29.92136 -28.55340 -26.65323 -25.24467 -24.09276 -22.20833 -21.86806 -21.07074 -19.84339 -19.18754 -16.75726 -16.63060 -16.49572 -16.48532 -15.48787 -15.42262 -15.12732 -14.70991 -14.07965 -13.95155 -13.60813 -13.38569 -13.08515 -12.70584 -12.61676 -12.35130 -12.26915 -11.94305 -11.70733 -11.57823 -11.46564 -11.06632 -10.99452 -10.71419 -10.70915 -10.67985 -10.45784 -10.22008 -9.95602 -9.91573 -9.87954 -9.49735 -9.26236 -8.47532 -8.40188 -6.63569 -5.73164 -3.16354 3.12082 3.41626 3.45168 3.51365 3.52025 3.74723 4.56182 4.79636 4.80580 4.94762 5.07797 5.09373 5.21921 5.27025 5.28319 5.38119 5.38707 5.42953 5.55916 5.63279 5.63900 5.66177 5.69285 5.80278 5.82399 6.10774 6.16815 6.19013 6.32481 6.36019 6.43831 6.53710 6.72587 6.79733 6.93297 6.97402 7.01741 7.33659 7.75631 7.85699 8.01116 8.50546 8.74317 9.25543 9.89587 10.44417 11.34723 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.015797 B = 0.003675 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.111874 B = 7617.120292 C = 9056.579432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.059 3.941 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.138 4.138 7 C 0.507 3.493 8 O -0.535 6.535 9 N -0.723 5.723 10 C 0.116 3.884 11 H 0.080 0.920 12 C -0.116 4.116 13 C -0.131 4.131 14 C 0.142 3.858 15 N -0.589 5.589 16 C -0.256 4.256 17 H 0.066 0.934 18 C 0.006 3.994 19 N -0.899 5.899 20 Si 0.902 3.098 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.167 3.833 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.392 0.608 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.055 0.945 43 H 0.253 0.747 44 H 0.016 0.984 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.881 -13.604 -9.377 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.155 4.155 5 C -0.140 4.140 6 C -0.178 4.178 7 C 0.292 3.708 8 O -0.411 6.411 9 N -0.374 5.374 10 C 0.011 3.989 11 H 0.098 0.902 12 C -0.154 4.154 13 C -0.171 4.171 14 C 0.016 3.984 15 N -0.312 5.312 16 C -0.386 4.386 17 H 0.084 0.916 18 C -0.193 4.193 19 N -0.543 5.543 20 Si 0.732 3.268 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.040 3.960 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.225 0.775 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.383 -13.052 -9.213 16.858 hybrid contribution -0.499 0.449 0.325 0.746 sum -5.882 -12.603 -8.887 16.505 Atomic orbital electron populations 1.22725 0.81168 1.02568 1.00039 1.87852 1.19632 1.28491 1.95470 1.22593 0.94339 0.84292 1.00505 1.21536 0.92879 0.97829 1.03239 1.21231 0.93159 0.95609 1.04043 1.21626 0.96739 0.95318 1.04093 1.20571 0.82514 0.91344 0.76345 1.90739 1.60832 1.40695 1.48865 1.46106 1.06488 1.09481 1.75316 1.21952 0.92727 0.82475 1.01759 0.90182 1.21681 0.96170 0.98172 0.99354 1.22004 0.99234 0.95803 1.00068 1.20955 0.88410 0.98553 0.90495 1.43982 1.14178 1.07781 1.65267 1.19160 1.22714 0.86250 1.10427 0.91597 1.25034 1.01491 0.97129 0.95684 1.70025 1.37535 1.25437 1.21305 0.86290 0.81370 0.81900 0.77209 1.21272 1.21789 1.20431 1.21093 0.99671 0.86022 0.89223 0.94130 0.89771 0.94055 0.93040 0.93205 0.91194 0.91014 0.90741 0.91071 0.89318 0.88966 0.77545 0.93173 0.92310 0.92159 0.92675 0.96428 0.92649 0.93704 0.96596 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.40 -4.39 10.70 -35.23 -0.38 -4.76 16 3 C 0.06 0.61 5.94 37.16 0.22 0.83 16 4 C -0.12 -1.18 5.58 -26.72 -0.15 -1.33 16 5 C -0.10 -1.23 4.50 -26.73 -0.12 -1.35 16 6 C -0.14 -1.62 5.70 -27.89 -0.16 -1.78 16 7 C 0.51 8.64 7.79 -10.99 -0.09 8.55 16 8 O -0.54 -11.85 15.65 5.55 0.09 -11.76 16 9 N -0.72 -11.67 5.08 -53.66 -0.27 -11.94 16 10 C 0.12 2.29 2.60 -67.78 -0.18 2.11 16 11 H 0.08 1.81 7.58 -51.93 -0.39 1.42 16 12 C -0.12 -1.88 5.36 -26.66 -0.14 -2.02 16 13 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 14 C 0.14 2.99 6.52 -3.70 -0.02 2.96 16 15 N -0.59 -15.19 2.99 -172.32 -0.52 -15.70 16 16 C -0.26 -7.28 9.59 -15.06 -0.14 -7.43 16 17 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 18 C 0.01 0.16 4.91 -17.43 -0.09 0.08 16 19 N -0.90 -27.07 11.19 55.49 0.62 -26.45 16 20 Si 0.90 22.75 29.59 -169.99 -5.03 17.72 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.17 4.12 4.89 -3.71 -0.02 4.10 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 33 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.39 4.85 8.60 -40.82 -0.35 4.50 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 2.76 6.04 -51.93 -0.31 2.44 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -34.03 361.67 -8.17 -42.20 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.20 Total: 1.56 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 0.07 Total: 3.69 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.17 Total: -54.10 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.29 Total: -16.52 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.72 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.03 -8.17 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267609789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.178 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds