Wall clock time and date at job start Tue Mar 31 2020 03:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47067 * 2 1 4 4 C 1.46502 * 120.00249 * 269.99936 * 3 2 1 5 5 C 1.52996 * 109.47369 * 269.99784 * 4 3 2 6 6 N 1.46901 * 109.47381 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00206 * 89.99506 * 3 2 1 8 8 O 1.21585 * 120.00569 * 180.02562 * 7 3 2 9 9 N 1.34781 * 119.99776 * 0.02562 * 7 3 2 10 10 C 1.46500 * 119.99994 * 179.97438 * 9 7 3 11 11 C 1.53076 * 109.43981 * 84.79590 * 10 9 7 12 12 C 1.53183 * 109.29478 * 181.23571 * 11 10 9 13 13 N 1.46930 * 108.89468 * 305.57480 * 12 11 10 14 14 C 1.36937 * 120.63259 * 233.51494 * 13 12 11 15 15 H 1.08000 * 119.99761 * 151.83401 * 14 13 12 16 16 C 1.38806 * 120.00219 * 331.83653 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.07619 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07294 * 16 14 13 19 19 H 1.48506 * 109.46812 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47258 * 119.99807 * 18 16 14 21 21 H 1.48499 * 109.47344 * 240.00342 * 18 16 14 22 22 C 1.46925 * 118.73328 * 53.53726 * 13 12 11 23 23 C 1.53033 * 109.45902 * 204.99610 * 10 9 7 24 24 H 1.08996 * 109.46963 * 60.00478 * 1 2 3 25 25 H 1.09000 * 109.46788 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47376 * 299.99730 * 1 2 3 27 27 H 1.08997 * 109.47376 * 240.00270 * 2 1 3 28 28 H 1.09001 * 109.47364 * 119.99770 * 2 1 3 29 29 H 1.09000 * 109.46718 * 29.99894 * 4 3 2 30 30 H 1.09005 * 109.47068 * 149.99808 * 4 3 2 31 31 H 1.08998 * 109.47007 * 300.00483 * 5 4 3 32 32 H 1.09006 * 109.46832 * 59.99462 * 5 4 3 33 33 H 1.00903 * 110.99691 * 56.04964 * 6 5 4 34 34 H 1.00902 * 110.99511 * 179.97438 * 6 5 4 35 35 H 0.97007 * 119.99982 * 359.97438 * 9 7 3 36 36 H 1.08994 * 109.45870 * 324.97548 * 10 9 7 37 37 H 1.09005 * 109.39190 * 61.35477 * 11 10 9 38 38 H 1.09004 * 109.62337 * 301.25270 * 11 10 9 39 39 H 1.09005 * 109.58619 * 185.72200 * 12 11 10 40 40 H 1.08998 * 109.58733 * 65.43770 * 12 11 10 41 41 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.58688 * 66.18006 * 22 13 12 43 43 H 1.08996 * 109.58570 * 186.45714 * 22 13 12 44 44 H 1.09003 * 109.49897 * 58.68032 * 23 10 9 45 45 H 1.09000 * 109.52987 * 298.59684 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8316 -1.7104 6 7 3.9522 2.5236 -2.9829 7 6 2.2428 2.0166 1.1672 8 8 2.6477 3.1631 1.1673 9 7 2.0186 1.3811 2.3344 10 6 2.2632 2.0716 3.6032 11 6 1.0307 2.8978 3.9794 12 6 1.3015 3.6424 5.2904 13 7 1.7153 2.6714 6.3125 14 6 1.0702 2.6105 7.5188 15 1 1.0329 1.6794 8.0648 16 6 0.4643 3.7454 8.0400 17 7 0.7776 4.9339 7.5691 18 14 -0.7961 3.5860 9.4095 19 1 -0.9692 2.1529 9.7585 20 1 -0.3262 4.3325 10.6040 21 1 -2.0944 4.1455 8.9551 22 6 2.8348 1.7673 6.0156 23 6 2.5459 1.0407 4.6983 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0283 30 1 2.0955 3.1411 -1.1383 31 1 4.3882 2.2156 -0.9507 32 1 3.8745 0.7623 -1.8407 33 1 3.7418 3.5074 -2.9056 34 1 4.9007 2.3804 -3.2957 35 1 1.6953 0.4665 2.3344 36 1 3.1227 2.7333 3.4966 37 1 0.1755 2.2341 4.1078 38 1 0.8175 3.6178 3.1893 39 1 0.3939 4.1510 5.6159 40 1 2.0954 4.3735 5.1381 41 1 0.3544 5.7270 7.9335 42 1 3.7549 2.3440 5.9207 43 1 2.9407 1.0404 6.8208 44 1 3.4104 0.4392 4.4174 45 1 1.6775 0.3937 4.8226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331558235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:13 Heat of formation + Delta-G solvation = -8.677504 kcal Electronic energy + Delta-G solvation = -23544.414170 eV Core-core repulsion = 20211.351948 eV Total energy + Delta-G solvation = -3333.062222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.27729 -37.72147 -36.25296 -34.92664 -34.16130 -32.01155 -30.80232 -30.03206 -29.49559 -27.35971 -24.90003 -23.60659 -22.73378 -22.19544 -21.53343 -19.74929 -19.19085 -17.99666 -16.85777 -16.60664 -15.85684 -15.54673 -14.89920 -14.82450 -14.33506 -14.17495 -13.87144 -13.75113 -13.60932 -13.46720 -12.98044 -12.94968 -12.51724 -12.36503 -12.24483 -12.01627 -11.47128 -11.42199 -11.29762 -11.08810 -10.88243 -10.72723 -10.35080 -10.19511 -10.05687 -9.91867 -9.73386 -9.52299 -9.06361 -8.84268 -8.54591 -8.34940 -6.66341 -5.76683 -3.19928 2.67068 3.36537 3.38214 3.45810 3.47894 3.97901 4.44724 4.50731 4.68210 4.81245 4.88658 5.09455 5.12441 5.32540 5.36113 5.41866 5.48076 5.50310 5.55783 5.63593 5.68095 5.83707 5.86703 5.98624 6.11811 6.26188 6.34378 6.44022 6.49047 6.63738 6.67870 6.78729 6.82912 6.92713 6.97671 7.09938 7.11488 7.41828 7.71486 7.81572 8.10316 8.46991 8.78289 9.22843 9.86201 10.43126 11.31779 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.029636 B = 0.003520 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.568060 B = 7953.351775 C = 8160.024890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 N -0.633 5.633 4 C 0.137 3.863 5 C 0.045 3.955 6 N -0.850 5.850 7 C 0.704 3.296 8 O -0.588 6.588 9 N -0.739 5.739 10 C 0.167 3.833 11 C -0.146 4.146 12 C 0.174 3.826 13 N -0.593 5.593 14 C -0.253 4.253 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.149 3.851 23 C -0.138 4.138 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.343 0.657 34 H 0.343 0.657 35 H 0.390 0.610 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.020 0.980 41 H 0.253 0.747 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -10.807 -17.917 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.016 4.016 3 N -0.371 5.371 4 C 0.012 3.988 5 C -0.087 4.087 6 N -0.379 5.379 7 C 0.405 3.595 8 O -0.465 6.465 9 N -0.393 5.393 10 C 0.064 3.936 11 C -0.186 4.186 12 C 0.048 3.952 13 N -0.316 5.316 14 C -0.383 4.383 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.216 1.216 22 C 0.022 3.978 23 C -0.178 4.178 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.224 0.776 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.470 -10.279 -18.102 20.963 hybrid contribution -0.143 0.018 1.167 1.176 sum 2.327 -10.261 -16.935 19.937 Atomic orbital electron populations 1.22240 0.95784 1.02263 1.02985 1.21465 0.94577 0.82747 1.02810 1.47145 1.70710 1.14321 1.04957 1.21143 0.95323 0.98644 0.83641 1.22165 0.97345 0.99088 0.90130 1.58697 1.31164 1.17380 1.30708 1.15970 0.78571 0.84536 0.80417 1.90916 1.52900 1.16576 1.86140 1.45676 1.71428 1.17148 1.05061 1.20909 0.99085 0.93759 0.79888 1.22569 0.96666 0.99194 1.00175 1.20748 1.00426 0.89898 0.84169 1.44114 1.33840 1.39930 1.13668 1.19209 1.28548 0.93923 0.96633 0.91628 1.25070 1.01212 0.95079 0.98305 1.70047 1.43111 0.96856 1.44467 0.86237 0.81466 0.77512 0.81620 1.20277 1.21738 1.21579 1.20830 0.90915 0.93026 0.93053 1.22332 1.00657 0.97808 0.97004 0.92197 0.91501 0.92021 0.90270 0.90878 0.90154 0.89986 0.94826 0.91292 0.84495 0.84513 0.77552 0.90199 0.92887 0.92836 0.89351 0.96171 0.93647 0.96228 0.92357 0.92738 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.11 0.89 5.89 -4.04 -0.02 0.86 16 3 N -0.63 -7.39 2.47 -179.42 -0.44 -7.83 16 4 C 0.14 1.47 5.67 -4.04 -0.02 1.44 16 5 C 0.04 0.44 7.11 -3.83 -0.03 0.42 16 6 N -0.85 -7.09 9.62 -10.37 -0.10 -7.19 16 7 C 0.70 11.12 8.24 -86.91 -0.72 10.40 16 8 O -0.59 -11.79 15.58 5.29 0.08 -11.71 16 9 N -0.74 -10.90 4.94 -58.62 -0.29 -11.19 16 10 C 0.17 3.00 2.41 -67.87 -0.16 2.84 16 11 C -0.15 -2.99 5.66 -26.60 -0.15 -3.14 16 12 C 0.17 4.31 5.30 -3.71 -0.02 4.29 16 13 N -0.59 -14.94 3.00 -172.33 -0.52 -15.46 16 14 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 15 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -26.52 11.20 55.49 0.62 -25.90 16 18 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 23 C -0.14 -2.32 5.55 -26.62 -0.15 -2.47 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.51 8.07 -51.93 -0.42 0.10 16 28 H 0.07 0.55 6.36 -51.93 -0.33 0.22 16 29 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 30 H 0.08 1.04 7.42 -51.93 -0.39 0.66 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.34 2.71 8.99 -39.29 -0.35 2.36 16 34 H 0.34 2.33 9.08 -39.29 -0.36 1.97 16 35 H 0.39 4.66 6.33 -40.82 -0.26 4.41 16 36 H 0.08 1.63 7.58 -51.93 -0.39 1.23 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -32.49 356.46 -9.29 -41.78 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.84 Total: 5.83 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -1.15 Total: 9.57 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -0.73 Total: -67.56 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.49 -9.29 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331558235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.100 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds