Wall clock time and date at job start Tue Mar 31 2020 03:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47246 * 2 1 4 4 N 1.46503 * 109.46701 * 119.99369 * 2 1 3 5 5 C 1.34768 * 120.00213 * 278.00206 * 4 2 1 6 6 O 1.21589 * 120.00184 * 0.02562 * 5 4 2 7 7 N 1.34782 * 120.00191 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00410 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47365 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99923 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99973 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00362 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99825 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47156 * 269.99646 * 13 11 9 15 15 H 1.48506 * 109.47221 * 149.99899 * 13 11 9 16 16 H 1.48493 * 109.47236 * 29.99507 * 13 11 9 17 17 C 1.52997 * 109.47143 * 239.99651 * 2 1 3 18 18 H 1.09000 * 109.48451 * 177.32026 * 17 2 1 19 19 C 1.53052 * 109.48799 * 297.36238 * 17 2 1 20 20 N 1.46952 * 109.36271 * 178.36972 * 19 17 2 21 21 C 1.46893 * 111.00108 * 176.81065 * 20 19 17 22 22 C 1.46960 * 110.88166 * 300.67995 * 20 19 17 23 23 C 1.53052 * 109.36518 * 59.32151 * 22 20 19 24 24 N 1.46951 * 109.49004 * 57.27860 * 17 2 1 25 25 C 1.46900 * 111.00526 * 56.84097 * 24 17 2 26 26 H 1.08997 * 109.47403 * 300.00529 * 1 2 3 27 27 H 1.09005 * 109.47168 * 60.00250 * 1 2 3 28 28 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 29 29 H 0.97000 * 119.99565 * 98.01037 * 4 2 1 30 30 H 0.97000 * 119.99588 * 0.02562 * 7 5 4 31 31 H 1.09001 * 109.47116 * 60.00157 * 8 7 5 32 32 H 1.09009 * 109.47191 * 300.00369 * 8 7 5 33 33 H 0.96996 * 119.99614 * 359.97438 * 12 11 9 34 34 H 1.08994 * 109.48911 * 298.33576 * 19 17 2 35 35 H 1.08996 * 109.48903 * 58.40153 * 19 17 2 36 36 H 1.09004 * 109.47092 * 60.00127 * 21 20 19 37 37 H 1.09003 * 109.47505 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.47629 * 300.00290 * 21 20 19 39 39 H 1.08997 * 109.48799 * 179.28780 * 22 20 19 40 40 H 1.08992 * 109.48712 * 299.35169 * 22 20 19 41 41 H 1.09002 * 109.48710 * 61.56104 * 23 22 20 42 42 H 1.08993 * 109.48716 * 181.61072 * 23 22 20 43 43 H 1.09005 * 109.46732 * 53.66481 * 25 24 17 44 44 H 1.08996 * 109.47543 * 173.66557 * 25 24 17 45 45 H 1.09003 * 109.47011 * 293.67186 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.0896 -0.0342 2.3712 6 8 1.7484 1.1309 2.4386 7 7 2.5383 -0.6697 3.4719 8 6 2.6154 0.0435 4.7492 9 6 3.1454 -0.8846 5.8116 10 1 3.3991 -1.9040 5.5605 11 6 3.3056 -0.4327 7.1043 12 7 2.9962 0.8084 7.4102 13 14 3.9619 -1.5834 8.4214 14 1 2.8286 -2.2885 9.0723 15 1 4.7062 -0.7982 9.4387 16 1 4.8727 -2.5783 7.8004 17 6 2.0400 -0.7213 -1.2492 18 1 3.1289 -0.6800 -1.2737 19 6 1.5849 -2.1823 -1.2167 20 7 2.0429 -2.8624 -2.4362 21 6 1.6904 -4.2881 -2.4078 22 6 1.4998 -2.2094 -3.6355 23 6 1.9549 -0.7485 -3.6680 24 7 1.4974 -0.0680 -2.4484 25 6 1.8504 1.3577 -2.4767 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 2.2902 -1.6200 1.1426 30 1 2.8102 -1.5992 3.4183 31 1 1.6216 0.3904 5.0322 32 1 3.2836 0.8988 4.6481 33 1 2.6558 1.4060 6.7262 34 1 2.0103 -2.6763 -0.3433 35 1 0.4970 -2.2232 -1.1642 36 1 0.6079 -4.3934 -2.3345 37 1 2.0413 -4.7675 -3.3217 38 1 2.1606 -4.7617 -1.5460 39 1 1.8632 -2.7233 -4.5254 40 1 0.4110 -2.2507 -3.6105 41 1 3.0429 -0.7075 -3.7204 42 1 1.5298 -0.2546 -4.5417 43 1 2.9295 1.4670 -2.3683 44 1 1.5347 1.7915 -3.4254 45 1 1.3490 1.8724 -1.6570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345869885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:53 Heat of formation + Delta-G solvation = -18.542324 kcal Electronic energy + Delta-G solvation = -23415.604566 eV Core-core repulsion = 20082.114574 eV Total energy + Delta-G solvation = -3333.489993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.33856 -38.98912 -36.22843 -35.08749 -34.20491 -32.49780 -31.20390 -29.56058 -28.98300 -26.49333 -25.65133 -24.70106 -23.45895 -22.67100 -21.36969 -20.24686 -19.33462 -18.24519 -16.89053 -16.30326 -16.00377 -15.57677 -15.19951 -14.96173 -14.82412 -14.68812 -14.21733 -13.93235 -13.75301 -13.39654 -13.08438 -12.90529 -12.75497 -12.39619 -12.19807 -12.15242 -11.96026 -11.85050 -11.80971 -11.55010 -11.16361 -11.07646 -10.97061 -10.75469 -10.45979 -10.16220 -9.50992 -8.82362 -8.76278 -8.72776 -8.62315 -8.53811 -7.86259 -6.48728 -4.21582 3.15274 3.39106 3.42656 3.56881 3.58279 3.75113 3.90249 4.45723 4.46575 4.61126 4.68346 4.90218 4.96183 5.01213 5.01639 5.18483 5.19263 5.26514 5.30388 5.31320 5.37709 5.43186 5.53780 5.56613 5.58135 5.62973 5.75027 5.82026 5.99576 6.11575 6.41861 6.58414 6.61315 6.77456 6.82432 6.92034 6.93252 7.29812 7.38613 7.50503 7.89795 8.32514 8.66294 8.85497 9.30050 9.53122 10.91722 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.026078 B = 0.003327 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.461639 B = 8414.976813 C = 9182.632490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.171 3.829 3 H 0.087 0.913 4 N -0.752 5.752 5 C 0.695 3.305 6 O -0.601 6.601 7 N -0.725 5.725 8 C 0.258 3.742 9 C -0.622 4.622 10 H 0.057 0.943 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 1.079 2.921 14 H -0.286 1.286 15 H -0.283 1.283 16 H -0.288 1.288 17 C 0.082 3.918 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.546 5.546 21 C 0.025 3.975 22 C 0.056 3.944 23 C 0.057 3.943 24 N -0.533 5.533 25 C 0.018 3.982 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.389 0.611 30 H 0.388 0.612 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.273 0.727 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.027 0.973 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.081 0.919 43 H 0.029 0.971 44 H 0.068 0.932 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 -7.814 -24.014 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.064 3.936 3 H 0.105 0.895 4 N -0.410 5.410 5 C 0.395 3.605 6 O -0.480 6.480 7 N -0.377 5.377 8 C 0.136 3.864 9 C -0.660 4.660 10 H 0.075 0.925 11 C -0.184 4.184 12 N -0.538 5.538 13 Si 0.906 3.094 14 H -0.213 1.213 15 H -0.208 1.208 16 H -0.214 1.214 17 C -0.028 4.028 18 H 0.074 0.926 19 C -0.069 4.069 20 N -0.271 5.271 21 C -0.123 4.123 22 C -0.072 4.072 23 C -0.071 4.071 24 N -0.258 5.258 25 C -0.130 4.130 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.223 0.777 30 H 0.220 0.780 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.854 -6.791 -22.297 23.483 hybrid contribution -0.140 -0.841 -1.730 1.928 sum -2.995 -7.632 -24.027 25.387 Atomic orbital electron populations 1.22129 0.94955 1.01786 1.02461 1.20606 0.94616 0.96544 0.81825 0.89542 1.45262 1.72592 1.14994 1.08172 1.16121 0.78933 0.85077 0.80361 1.90859 1.56480 1.15703 1.85002 1.45510 1.68056 1.15115 1.09032 1.19026 0.96348 0.92694 0.78328 1.22095 1.49211 0.99001 0.95695 0.92518 1.25867 0.95162 0.98649 0.98697 1.70719 1.39853 1.05387 1.37849 0.83407 0.76405 0.74413 0.75135 1.21308 1.20810 1.21402 1.21867 0.97682 0.93176 0.90037 0.92609 1.22267 0.99163 0.93046 0.92461 1.62131 1.59665 1.02785 1.02483 1.22353 0.98820 0.88264 1.02892 1.22179 0.97985 0.94002 0.93073 1.22174 0.98661 0.93664 0.92613 1.62088 1.59379 1.02808 1.01547 1.22475 0.99239 0.88214 1.03078 0.92200 0.91039 0.93003 0.77687 0.77976 0.96777 0.96795 0.91621 0.90336 0.92976 0.95479 0.91340 0.91129 0.90310 0.93867 0.93922 0.90030 0.95228 0.91273 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.89 37.16 0.33 -1.73 16 2 C 0.17 2.32 1.85 -67.93 -0.13 2.20 16 3 H 0.09 1.35 6.19 -51.93 -0.32 1.03 16 4 N -0.75 -11.50 5.01 -58.68 -0.29 -11.80 16 5 C 0.70 14.53 8.49 -86.92 -0.74 13.79 16 6 O -0.60 -15.00 15.94 5.29 0.08 -14.91 16 7 N -0.73 -15.89 5.55 -66.42 -0.37 -16.26 16 8 C 0.26 6.98 4.74 -5.20 -0.02 6.95 16 9 C -0.62 -17.35 9.28 -34.44 -0.32 -17.66 16 10 H 0.06 1.50 7.60 -52.48 -0.40 1.10 16 11 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 12 N -0.90 -27.67 13.65 55.43 0.76 -26.91 16 13 Si 1.08 24.69 29.90 -169.99 -5.08 19.61 16 14 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 17 C 0.08 0.91 1.94 -67.66 -0.13 0.78 16 18 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 19 C 0.06 0.60 4.42 -3.77 -0.02 0.58 16 20 N -0.55 -5.09 4.97 -242.77 -1.21 -6.30 16 21 C 0.02 0.19 9.60 60.06 0.58 0.77 16 22 C 0.06 0.46 5.62 -3.76 -0.02 0.43 16 23 C 0.06 0.48 5.61 -3.77 -0.02 0.46 16 24 N -0.53 -5.28 3.92 -234.73 -0.92 -6.20 16 25 C 0.02 0.17 8.85 60.06 0.53 0.70 16 26 H 0.06 0.96 8.02 -51.93 -0.42 0.55 16 27 H 0.07 0.87 7.13 -51.93 -0.37 0.50 16 28 H 0.05 0.64 6.46 -51.93 -0.34 0.31 16 29 H 0.39 4.93 6.76 -40.82 -0.28 4.65 16 30 H 0.39 7.38 8.34 -40.82 -0.34 7.04 16 31 H 0.01 0.42 8.01 -51.93 -0.42 0.00 16 32 H 0.01 0.42 8.01 -51.92 -0.42 0.00 16 33 H 0.27 8.49 7.22 -40.82 -0.29 8.20 16 34 H 0.08 0.77 6.46 -51.93 -0.34 0.43 16 35 H 0.05 0.56 6.42 -51.93 -0.33 0.23 16 36 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 43 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 44 H 0.07 0.52 8.02 -51.93 -0.42 0.11 16 45 H 0.08 0.80 6.34 -51.93 -0.33 0.47 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -33.28 349.14 -9.42 -42.70 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.59 Total: 7.02 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -0.06 Total: 7.79 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: -2.03 Total: -67.47 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.08 Total: -14.91 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.61 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.28 -9.42 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345869885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.161 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds