Wall clock time and date at job start Tue Mar 31 2020 03:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46680 * 2 1 4 4 C 1.52999 * 109.47484 * 120.00027 * 2 1 3 5 5 N 1.46498 * 109.46858 * 65.68056 * 4 2 1 6 6 C 1.34781 * 119.99946 * 185.00873 * 5 4 2 7 7 O 1.21588 * 119.99918 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00102 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99635 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.46611 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99685 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00228 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99786 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47119 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47154 * 119.99940 * 14 12 10 17 17 H 1.48496 * 109.47364 * 239.99860 * 14 12 10 18 18 N 1.46902 * 109.47217 * 240.00429 * 2 1 3 19 19 C 1.46948 * 111.00121 * 182.86583 * 18 2 1 20 20 C 1.53048 * 109.36816 * 176.81113 * 19 18 2 21 21 N 1.46964 * 109.36613 * 58.39502 * 20 19 18 22 22 C 1.46897 * 110.99966 * 176.81437 * 21 20 19 23 23 C 1.46957 * 110.87848 * 300.68562 * 21 20 19 24 24 C 1.46954 * 110.99899 * 59.06091 * 18 2 1 25 25 H 1.08999 * 109.47276 * 299.99603 * 1 2 3 26 26 H 1.08995 * 109.47546 * 59.99894 * 1 2 3 27 27 H 1.08997 * 109.46896 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46949 * 185.68265 * 4 2 1 29 29 H 1.09001 * 109.47342 * 305.67884 * 4 2 1 30 30 H 0.96996 * 119.99958 * 5.00411 * 5 4 2 31 31 H 0.96996 * 119.99803 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47375 * 299.99473 * 9 8 6 33 33 H 1.08990 * 109.47101 * 60.00260 * 9 8 6 34 34 H 0.97000 * 120.00434 * 180.02562 * 13 12 10 35 35 H 1.09005 * 109.49078 * 296.77872 * 19 18 2 36 36 H 1.09001 * 109.49497 * 56.84023 * 19 18 2 37 37 H 1.09006 * 109.48940 * 298.43337 * 20 19 18 38 38 H 1.08999 * 109.49380 * 178.36520 * 20 19 18 39 39 H 1.09000 * 109.46723 * 183.80364 * 22 21 20 40 40 H 1.08999 * 109.47111 * 303.80294 * 22 21 20 41 41 H 1.08997 * 109.46919 * 63.80866 * 22 21 20 42 42 H 1.08992 * 109.49147 * 299.34926 * 23 21 20 43 43 H 1.09006 * 109.49979 * 179.29311 * 23 21 20 44 44 H 1.09000 * 109.49506 * 303.15897 * 24 18 2 45 45 H 1.09005 * 109.49029 * 63.20271 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6666 -2.1362 1.1828 6 6 1.9232 -2.9506 2.2256 7 8 2.4651 -2.5110 3.2213 8 7 1.5791 -4.2523 2.1647 9 6 1.8586 -5.1376 3.2981 10 6 1.3797 -6.5301 2.9777 11 1 0.9134 -6.7350 2.0253 12 6 1.5359 -7.5422 3.9008 13 7 2.1032 -7.2926 5.0607 14 14 0.9416 -9.2682 3.5040 15 1 0.3433 -9.2854 2.1450 16 1 2.0887 -10.2100 3.5524 17 1 -0.0801 -9.6810 4.4994 18 7 2.0197 -0.6924 -1.1995 19 6 3.4870 -0.7717 -1.1997 20 6 3.9522 -1.5672 -2.4216 21 7 3.4627 -0.9139 -3.6437 22 6 3.9525 -1.6063 -4.8431 23 6 1.9953 -0.8347 -3.6434 24 6 1.5302 -0.0390 -2.4214 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1253 -0.6339 1.3014 29 1 1.5961 -0.2695 2.1363 30 1 1.2346 -2.4870 0.3883 31 1 1.1465 -4.6029 1.3705 32 1 2.9318 -5.1575 3.4875 33 1 1.3401 -4.7693 4.1832 34 1 2.2134 -8.0047 5.7100 35 1 3.9056 0.2340 -1.2396 36 1 3.8245 -1.2704 -0.2911 37 1 3.5559 -2.5813 -2.3678 38 1 5.0415 -1.6026 -2.4395 39 1 3.6317 -1.0637 -5.7323 40 1 5.0412 -1.6510 -4.8177 41 1 3.5477 -2.6180 -4.8691 42 1 1.5768 -1.8402 -3.6034 43 1 1.6577 -0.3360 -4.5520 44 1 0.4409 -0.0036 -2.4036 45 1 1.9262 0.9751 -2.4751 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347581485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:05 Heat of formation + Delta-G solvation = -44.979266 kcal Electronic energy + Delta-G solvation = -23188.526673 eV Core-core repulsion = 19853.890289 eV Total energy + Delta-G solvation = -3334.636384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09696 -40.24349 -37.72839 -36.10041 -35.01362 -34.26026 -32.36855 -31.83988 -29.32930 -28.38885 -27.31063 -24.78635 -24.50931 -24.06278 -21.91322 -21.51397 -20.54704 -19.77551 -18.03649 -17.77015 -17.13854 -16.56320 -16.32575 -16.09499 -15.88150 -15.78209 -15.51403 -15.42043 -14.93209 -14.82020 -14.52857 -14.08190 -13.98891 -13.67695 -13.31105 -13.13140 -12.89150 -12.85519 -12.73342 -12.60616 -12.35368 -12.21054 -12.20335 -12.17863 -11.58667 -11.44447 -11.41966 -11.19301 -10.79882 -10.18091 -9.50261 -9.42982 -9.24717 -8.26977 -6.43159 1.44018 1.45633 1.58911 1.97962 2.32108 2.41060 2.82365 2.98901 3.07953 3.66065 3.70243 3.88557 3.99976 4.10084 4.23440 4.35095 4.38240 4.44889 4.51614 4.62582 4.68413 4.69529 4.78032 4.84986 4.86347 4.90959 5.00668 5.02403 5.05483 5.10360 5.14375 5.29900 5.38511 5.51841 5.61353 5.72159 5.88157 5.96033 5.96834 6.15403 6.17384 6.35829 6.69261 7.26509 7.38979 7.80077 8.85705 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.018357 B = 0.003505 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.969871 B = 7986.540079 C = 8807.346803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.069 0.931 4 C 0.146 3.854 5 N -0.717 5.717 6 C 0.689 3.311 7 O -0.654 6.654 8 N -0.725 5.725 9 C 0.287 3.713 10 C -0.553 4.553 11 H 0.082 0.918 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.986 3.014 15 H -0.254 1.254 16 H -0.279 1.279 17 H -0.278 1.278 18 N -0.540 5.540 19 C 0.059 3.941 20 C 0.060 3.940 21 N -0.554 5.554 22 C 0.025 3.975 23 C 0.056 3.944 24 C 0.058 3.942 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.411 0.589 31 H 0.402 0.598 32 H -0.016 1.016 33 H -0.015 1.015 34 H 0.269 0.731 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.035 0.965 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 15.390 -21.950 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 H 0.087 0.913 4 C 0.021 3.979 5 N -0.374 5.374 6 C 0.389 3.611 7 O -0.537 6.537 8 N -0.378 5.378 9 C 0.163 3.837 10 C -0.591 4.591 11 H 0.100 0.900 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.809 3.191 15 H -0.177 1.177 16 H -0.204 1.204 17 H -0.204 1.204 18 N -0.266 5.266 19 C -0.070 4.070 20 C -0.068 4.068 21 N -0.279 5.279 22 C -0.123 4.123 23 C -0.072 4.072 24 C -0.070 4.070 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.248 0.752 31 H 0.237 0.763 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.042 0.958 42 H 0.053 0.947 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.734 15.720 -20.898 26.208 hybrid contribution -0.148 -1.198 -0.097 1.211 sum -1.881 14.522 -20.995 25.597 Atomic orbital electron populations 1.21866 0.92460 1.02754 1.02916 1.21828 0.97061 0.95749 0.88045 0.91284 1.21261 0.99066 0.79767 0.97823 1.44740 1.65938 1.09182 1.17564 1.16353 0.79402 0.81748 0.83586 1.90827 1.51737 1.76557 1.34574 1.45282 1.64233 1.07244 1.21068 1.18375 0.93666 0.87947 0.83669 1.21630 1.40866 0.93314 1.03292 0.89974 1.26063 0.94776 1.04436 0.94325 1.70150 1.43760 1.35017 1.08048 0.85093 0.77879 0.77161 0.78945 1.17733 1.20422 1.20390 1.62122 1.09373 1.52949 1.02165 1.22112 0.87739 0.99308 0.97798 1.22106 1.00020 0.95528 0.89186 1.62229 1.10447 1.52635 1.02587 1.22380 1.00997 0.96437 0.92474 1.22222 0.86851 0.99435 0.98658 1.22263 1.01023 0.95726 0.87982 0.91633 0.90400 0.92411 0.93248 0.92099 0.75188 0.76274 0.99839 0.99752 0.92256 0.93980 0.91272 0.95111 0.90038 0.90146 0.91089 0.95842 0.94716 0.88815 0.88272 0.94021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.82 71.98 0.63 -1.51 16 2 C 0.08 1.44 2.34 44.91 0.10 1.55 16 3 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 4 C 0.15 3.77 4.64 86.38 0.40 4.17 16 5 N -0.72 -21.83 5.09 -478.53 -2.43 -24.26 16 6 C 0.69 29.86 8.57 179.05 1.53 31.40 16 7 O -0.65 -34.83 16.34 -3.99 -0.07 -34.90 16 8 N -0.72 -32.58 5.55 -482.29 -2.68 -35.26 16 9 C 0.29 16.36 5.43 85.63 0.46 16.83 16 10 C -0.55 -30.83 9.28 25.60 0.24 -30.59 16 11 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 12 C 0.00 0.19 5.46 84.66 0.46 0.66 16 13 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 14 Si 0.99 42.93 29.54 68.60 2.03 44.95 16 15 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 16 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 18 N -0.54 -9.57 3.92 -870.48 -3.41 -12.98 16 19 C 0.06 1.17 5.25 86.31 0.45 1.62 16 20 C 0.06 1.15 5.62 86.31 0.49 1.63 16 21 N -0.55 -9.33 4.97 -921.92 -4.58 -13.91 16 22 C 0.03 0.34 9.60 127.69 1.23 1.57 16 23 C 0.06 0.82 5.62 86.31 0.49 1.31 16 24 C 0.06 0.81 5.30 86.31 0.46 1.27 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 0.87 6.32 -2.39 -0.02 0.86 16 27 H 0.06 1.00 7.34 -2.39 -0.02 0.99 16 28 H 0.05 1.39 6.62 -2.39 -0.02 1.37 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.41 10.66 7.45 -92.71 -0.69 9.97 16 31 H 0.40 15.21 8.34 -92.71 -0.77 14.44 16 32 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.07 1.65 6.21 -2.39 -0.01 1.63 16 37 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 41 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 1.05 8.14 -2.38 -0.02 1.04 16 44 H 0.10 1.11 6.12 -2.39 -0.01 1.09 16 45 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -72.88 354.17 -4.39 -77.27 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -0.48 Total: 25.96 kcal Atomic # 6 Polarization: 22.95 SS G_CDS: 6.95 Total: 29.89 kcal Atomic # 7 Polarization: -130.36 SS G_CDS: -12.82 Total: -143.18 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.07 Total: -34.90 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -72.88 -4.39 -77.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347581485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.293 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds