Wall clock time and date at job start Tue Mar 31 2020 03:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86800 * 119.99967 * 2 1 4 4 H 1.48503 * 109.46994 * 274.03340 * 3 2 1 5 5 H 1.48500 * 109.47002 * 34.02980 * 3 2 1 6 6 H 1.48492 * 109.47402 * 154.02819 * 3 2 1 7 7 C 1.40298 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99830 * 342.49901 * 7 2 1 9 9 C 1.40543 * 120.00410 * 162.49602 * 7 2 1 10 10 C 1.44184 * 123.71309 * 335.06803 * 9 7 2 11 11 C 1.32759 * 114.43389 * 180.02562 * 10 9 7 12 12 S 1.75475 * 111.36163 * 0.02562 * 11 10 9 13 13 C 1.39543 * 123.71763 * 155.11410 * 9 7 2 14 14 C 1.46241 * 125.22846 * 359.97438 * 13 9 7 15 15 O 1.21759 * 119.99679 * 0.02562 * 14 13 9 16 16 N 1.34772 * 120.00271 * 180.02562 * 14 13 9 17 17 C 1.46493 * 120.00109 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.47142 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.46880 * 59.99976 * 18 17 16 20 20 O 1.42901 * 109.46996 * 300.00344 * 18 17 16 21 21 C 1.50703 * 109.47130 * 179.97438 * 18 17 16 22 22 O 1.20826 * 119.99662 * 114.99727 * 21 18 17 23 23 O 1.34220 * 120.00171 * 295.00414 * 21 18 17 24 24 H 0.97002 * 119.99684 * 359.97438 * 1 2 3 25 25 H 1.08011 * 122.78174 * 0.04259 * 10 9 7 26 26 H 1.07995 * 124.32224 * 180.26704 * 11 10 9 27 27 H 0.97005 * 119.99822 * 359.97438 * 16 14 13 28 28 H 1.09003 * 109.47539 * 299.99795 * 17 16 14 29 29 H 1.08998 * 109.47253 * 59.99846 * 17 16 14 30 30 H 0.96698 * 113.99603 * 299.99620 * 20 18 17 31 31 H 0.96705 * 117.00115 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4027 2.0956 -1.3966 5 1 1.4831 2.6265 0.7835 6 1 3.5780 1.4172 0.6131 7 6 2.0080 -1.2150 0.0005 8 1 1.5055 -2.1286 0.2822 9 6 3.3647 -1.2433 -0.3655 10 6 3.9837 -0.2608 -1.2201 11 6 5.2756 -0.4658 -1.4465 12 16 5.8495 -1.9027 -0.6187 13 6 4.2607 -2.2260 0.0574 14 6 3.9281 -3.3521 0.9291 15 8 2.7913 -3.4855 1.3442 16 7 4.8798 -4.2422 1.2729 17 6 4.5467 -5.3699 2.1466 18 6 5.7963 -6.2219 2.3784 19 1 6.5687 -5.6135 2.8490 20 8 6.2758 -6.7151 1.1258 21 6 5.4538 -7.3817 3.2777 22 8 5.5182 -8.5123 2.8564 23 8 5.0772 -7.1587 4.5465 24 1 -0.4850 0.8401 0.0004 25 1 3.4412 0.5730 -1.6411 26 1 5.8954 0.1726 -2.0586 27 1 5.7854 -4.1361 0.9418 28 1 4.1807 -4.9938 3.1019 29 1 3.7747 -5.9786 1.6758 30 1 5.6390 -7.2660 0.6504 31 1 4.8671 -7.9341 5.0849 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189237.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:00 Heat of formation + Delta-G solvation = -155.763595 kcal Electronic energy + Delta-G solvation = -19690.063389 eV Core-core repulsion = 16255.865210 eV Total energy + Delta-G solvation = -3434.198179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.055 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70907 -38.56674 -37.29192 -36.35979 -36.02098 -33.57981 -33.38767 -30.10165 -29.13120 -26.74710 -24.34609 -21.99591 -21.72999 -20.45960 -19.02489 -18.55160 -17.97160 -17.79262 -16.26832 -15.99408 -15.78681 -15.50593 -15.10877 -14.60147 -14.20956 -13.81843 -13.68317 -13.47110 -13.21824 -12.45926 -12.23948 -12.16094 -11.90488 -11.82489 -11.51486 -11.42918 -11.17390 -10.94926 -10.48266 -10.39257 -10.04842 -9.65985 -9.46238 -8.60601 -8.41932 -7.70287 -7.40202 -7.22342 -4.60461 1.82856 1.84383 2.64064 2.80188 2.84166 3.02960 3.07021 3.43374 3.47100 3.72859 3.75472 4.25017 4.32430 4.50915 4.79872 4.96097 5.08410 5.70754 5.73110 5.75692 6.11281 6.18660 6.57346 6.74641 6.85567 7.05413 7.12587 7.21110 7.58521 7.60030 8.19433 8.32892 8.42062 8.71861 9.46792 9.75142 Molecular weight = 285.05amu Principal moments of inertia in cm(-1) A = 0.024712 B = 0.004516 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.801818 B = 6198.755359 C = 7011.026674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.077 3.923 3 Si 0.910 3.090 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.240 1.240 7 C -0.360 4.360 8 H 0.123 0.877 9 C 0.108 3.892 10 C -0.165 4.165 11 C -0.176 4.176 12 S -0.016 6.016 13 C -0.429 4.429 14 C 0.599 3.401 15 O -0.556 6.556 16 N -0.746 5.746 17 C 0.105 3.895 18 C 0.110 3.890 19 H 0.144 0.856 20 O -0.527 6.527 21 C 0.458 3.542 22 O -0.509 6.509 23 O -0.508 6.508 24 H 0.293 0.707 25 H 0.126 0.874 26 H 0.144 0.856 27 H 0.395 0.605 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.389 0.611 31 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.021 -5.038 3.641 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.148 4.148 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.163 1.163 7 C -0.390 4.390 8 H 0.141 0.859 9 C 0.097 3.903 10 C -0.199 4.199 11 C -0.310 4.310 12 S 0.240 5.760 13 C -0.548 4.548 14 C 0.396 3.604 15 O -0.438 6.438 16 N -0.401 5.401 17 C -0.020 4.020 18 C 0.048 3.952 19 H 0.161 0.839 20 O -0.333 6.333 21 C 0.299 3.701 22 O -0.397 6.397 23 O -0.320 6.320 24 H 0.104 0.896 25 H 0.143 0.857 26 H 0.162 0.838 27 H 0.230 0.770 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.239 0.761 31 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 9.938 -5.422 3.867 11.963 hybrid contribution -1.272 0.653 -0.121 1.435 sum 8.667 -4.769 3.746 10.577 Atomic orbital electron populations 1.69597 1.08459 1.31168 1.29738 1.26563 0.94892 1.02324 0.90996 0.86430 0.81668 0.79204 0.79162 1.19081 1.20821 1.16303 1.19845 0.91737 0.96885 1.30485 0.85935 1.17872 0.92864 0.89375 0.90149 1.21478 0.94826 1.01362 1.02219 1.24949 0.98694 1.01846 1.05556 1.82842 1.14831 1.25106 1.53180 1.22351 0.94532 1.12226 1.25648 1.16775 0.83679 0.80465 0.79439 1.90716 1.20477 1.75650 1.56963 1.45666 1.13615 1.27259 1.53597 1.21583 0.94224 0.89101 0.97107 1.21758 0.99436 0.89924 0.84039 0.83856 1.86656 1.45530 1.70986 1.30128 1.24396 0.72693 0.91428 0.81573 1.90742 1.48781 1.24824 1.75332 1.84574 1.78936 1.44098 1.24421 0.89613 0.85717 0.83808 0.77010 0.89782 0.91376 0.76132 0.72934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.40 13.92 55.57 0.77 -18.62 16 2 C 0.08 1.93 5.48 -17.28 -0.09 1.83 16 3 Si 0.91 18.98 24.53 -169.99 -4.17 14.81 16 4 H -0.26 -5.15 6.64 56.52 0.38 -4.77 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.24 -5.15 6.73 56.52 0.38 -4.77 16 7 C -0.36 -9.77 9.00 -37.94 -0.34 -10.11 16 8 H 0.12 3.73 6.29 -52.48 -0.33 3.40 16 9 C 0.11 2.73 5.27 -106.21 -0.56 2.17 16 10 C -0.17 -3.65 7.55 -39.13 -0.30 -3.94 16 11 C -0.18 -3.42 11.07 28.86 0.32 -3.10 16 12 S -0.02 -0.32 22.25 -107.50 -2.39 -2.71 16 13 C -0.43 -10.24 6.51 -35.88 -0.23 -10.47 16 14 C 0.60 14.01 7.76 -13.05 -0.10 13.91 16 15 O -0.56 -14.91 14.47 5.14 0.07 -14.84 16 16 N -0.75 -13.34 5.44 -61.75 -0.34 -13.68 16 17 C 0.11 1.53 5.31 -4.04 -0.02 1.51 16 18 C 0.11 1.25 3.58 -27.88 -0.10 1.15 16 19 H 0.14 1.39 8.14 -51.93 -0.42 0.97 16 20 O -0.53 -6.35 12.74 -55.12 -0.70 -7.05 16 21 C 0.46 5.15 7.65 36.01 0.28 5.42 16 22 O -0.51 -7.04 17.08 -25.46 -0.43 -7.47 16 23 O -0.51 -4.52 13.42 -39.23 -0.53 -5.05 16 24 H 0.29 6.53 8.29 -40.82 -0.34 6.19 16 25 H 0.13 2.60 4.56 -52.48 -0.24 2.36 16 26 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.40 6.49 7.43 -40.82 -0.30 6.18 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.39 3.95 8.79 45.56 0.40 4.35 16 31 H 0.41 1.86 9.10 45.56 0.41 2.28 16 LS Contribution 290.42 15.07 4.38 4.38 Total: -1.00 -32.24 290.42 -5.42 -37.66 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -0.93 Total: 14.21 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.15 Total: -1.63 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.44 Total: -32.30 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.59 Total: -34.41 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.17 Total: 14.81 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -2.39 Total: -2.71 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.24 -5.42 -37.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189237.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.106 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds