Wall clock time and date at job start Tue Mar 31 2020 03:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36939 * 120.00098 * 2 1 4 4 H 1.07998 * 119.99879 * 157.03409 * 3 2 1 5 5 C 1.38811 * 119.99843 * 336.74790 * 3 2 1 6 6 N 1.31616 * 120.00141 * 156.45492 * 5 3 2 7 7 Si 1.86804 * 120.00059 * 336.46595 * 5 3 2 8 8 H 1.48499 * 109.47170 * 84.84104 * 7 5 3 9 9 H 1.48497 * 109.47110 * 204.84404 * 7 5 3 10 10 H 1.48501 * 109.47000 * 324.83813 * 7 5 3 11 11 C 1.46507 * 120.00092 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46701 * 270.00243 * 11 2 1 13 13 H 1.08996 * 109.47293 * 59.99873 * 12 11 2 14 14 O 1.42905 * 109.47203 * 299.99663 * 12 11 2 15 15 C 1.53005 * 109.46637 * 180.02562 * 12 11 2 16 16 N 1.46503 * 109.46998 * 184.99767 * 15 12 11 17 17 C 1.46496 * 119.99939 * 89.99442 * 16 15 12 18 18 C 1.34771 * 120.00056 * 270.00146 * 16 15 12 19 19 O 1.21279 * 120.00019 * 359.97438 * 18 16 15 20 20 C 1.50701 * 120.00282 * 179.97438 * 18 16 15 21 21 C 1.52998 * 109.47411 * 179.97438 * 20 18 16 22 22 C 1.53775 * 113.61610 * 274.13967 * 21 20 18 23 23 C 1.53953 * 87.02303 * 220.04666 * 22 21 20 24 24 C 1.53787 * 87.11152 * 25.36212 * 23 22 21 25 25 H 1.09003 * 109.47076 * 94.45611 * 1 2 3 26 26 H 1.09003 * 109.47245 * 214.45609 * 1 2 3 27 27 H 1.09000 * 109.47564 * 334.45484 * 1 2 3 28 28 H 0.97001 * 120.00074 * 180.02562 * 6 5 3 29 29 H 1.08994 * 109.46938 * 29.99634 * 11 2 1 30 30 H 1.08996 * 109.47351 * 150.00150 * 11 2 1 31 31 H 0.96705 * 114.00015 * 300.00490 * 14 12 11 32 32 H 1.08998 * 109.46997 * 304.99343 * 15 12 11 33 33 H 1.08995 * 109.47115 * 64.99697 * 15 12 11 34 34 H 1.09003 * 109.47315 * 90.00280 * 17 16 15 35 35 H 1.08998 * 109.47403 * 210.00145 * 17 16 15 36 36 H 1.09000 * 109.47753 * 330.00161 * 17 16 15 37 37 H 1.09000 * 109.47335 * 299.99997 * 20 18 16 38 38 H 1.09005 * 109.46907 * 59.99668 * 20 18 16 39 39 H 1.09002 * 112.84692 * 45.33435 * 21 20 18 40 40 H 1.08998 * 113.61763 * 334.56240 * 22 21 20 41 41 H 1.08998 * 113.61706 * 105.46940 * 22 21 20 42 42 H 1.09003 * 113.53830 * 270.81369 * 23 22 21 43 43 H 1.08999 * 113.74631 * 139.94223 * 23 22 21 44 44 H 1.08995 * 113.61865 * 220.09469 * 24 23 22 45 45 H 1.08995 * 113.68824 * 89.19298 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1654 1.2229 0.3649 5 6 1.5401 2.3392 -0.4746 6 7 1.9637 3.5196 -0.0750 7 14 0.1185 2.2160 -1.6802 8 1 -1.1493 2.0205 -0.9322 9 1 0.0354 3.4664 -2.4769 10 1 0.3395 1.0633 -2.5899 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7097 1.4433 13 1 1.5000 -1.8398 1.9572 14 8 3.2247 -0.7135 2.1165 15 6 3.2180 -3.0345 1.4439 16 7 3.3579 -3.5170 2.8201 17 6 2.3336 -4.3906 3.3977 18 6 4.4290 -3.1571 3.5547 19 8 5.2772 -2.4341 3.0764 20 6 4.5727 -3.6530 4.9706 21 6 5.8659 -3.1024 5.5750 22 6 7.1043 -3.9598 5.2656 23 6 7.5516 -3.6933 6.7144 24 6 6.0662 -3.4821 7.0518 25 1 -0.3633 -0.0798 -1.0246 26 1 -0.3634 -0.8474 0.5814 27 1 -0.3634 0.9272 0.4431 28 1 1.5375 4.3255 -0.4064 29 1 1.6084 -2.0286 -0.5128 30 1 3.1499 -1.1387 -0.5133 31 1 4.0872 -0.5452 1.7129 32 1 2.6710 -3.7705 0.8547 33 1 4.2062 -2.8832 1.0097 34 1 2.5902 -5.4314 3.2001 35 1 2.2816 -4.2273 4.4741 36 1 1.3667 -4.1633 2.9487 37 1 3.7219 -3.3147 5.5621 38 1 4.6062 -4.7425 4.9723 39 1 6.0086 -2.0407 5.3740 40 1 6.8724 -5.0059 5.0658 41 1 7.7633 -3.5208 4.5165 42 1 8.1566 -2.7933 6.8246 43 1 7.9916 -4.5617 7.2047 44 1 5.8881 -2.6580 7.7425 45 1 5.5486 -4.3966 7.3414 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755799942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:39 Heat of formation + Delta-G solvation = -38.862863 kcal Electronic energy + Delta-G solvation = -23411.301195 eV Core-core repulsion = 20044.637287 eV Total energy + Delta-G solvation = -3366.663908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.12965 -38.55667 -37.16881 -35.36109 -34.54669 -31.57967 -31.02787 -29.51722 -27.20270 -26.20240 -25.72866 -25.47278 -23.55507 -21.88018 -20.46171 -19.54021 -19.06679 -17.04553 -16.74117 -16.37270 -15.90161 -15.67351 -15.29088 -14.83384 -14.62790 -14.30341 -14.03472 -13.78418 -13.28262 -13.26779 -12.68094 -12.62881 -12.57872 -12.52848 -12.32314 -12.02871 -11.90274 -11.60268 -11.48359 -11.16892 -10.72808 -10.56369 -10.52881 -10.41685 -10.29506 -10.21580 -10.01137 -9.69013 -9.51464 -9.41472 -8.63064 -8.30033 -6.88914 -5.83973 -3.15861 2.82352 3.08388 3.40042 3.54589 3.57298 4.36195 4.50830 4.56696 4.63389 4.71373 4.80468 4.89913 5.00680 5.10179 5.19392 5.26218 5.32184 5.42466 5.45675 5.48329 5.53199 5.54655 5.59730 5.66677 5.74482 5.75173 5.82233 5.91813 5.96887 6.00413 6.15771 6.25607 6.30785 6.42329 6.52522 6.62144 6.71150 6.76929 7.47888 8.02459 8.36579 8.43666 8.52581 9.04893 9.83566 10.13632 11.32233 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.028480 B = 0.003578 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.895924 B = 7823.946079 C = 8404.194123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.602 5.602 3 C -0.249 4.249 4 H 0.089 0.911 5 C 0.019 3.981 6 N -0.906 5.906 7 Si 0.884 3.116 8 H -0.289 1.289 9 H -0.307 1.307 10 H -0.281 1.281 11 C 0.123 3.877 12 C 0.074 3.926 13 H 0.083 0.917 14 O -0.535 6.535 15 C 0.081 3.919 16 N -0.615 5.615 17 C 0.079 3.921 18 C 0.517 3.483 19 O -0.529 6.529 20 C -0.129 4.129 21 C -0.094 4.094 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.139 4.139 25 H 0.006 0.994 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.260 0.740 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.370 0.630 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.092 -20.821 11.119 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.324 5.324 3 C -0.377 4.377 4 H 0.106 0.894 5 C -0.179 4.179 6 N -0.550 5.550 7 Si 0.715 3.285 8 H -0.216 1.216 9 H -0.235 1.235 10 H -0.207 1.207 11 C -0.005 4.005 12 C 0.010 3.990 13 H 0.100 0.900 14 O -0.339 6.339 15 C -0.042 4.042 16 N -0.349 5.349 17 C -0.064 4.064 18 C 0.306 3.694 19 O -0.404 6.404 20 C -0.168 4.168 21 C -0.112 4.112 22 C -0.171 4.171 23 C -0.180 4.180 24 C -0.177 4.177 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.217 0.783 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.002 -20.227 11.225 23.477 hybrid contribution -0.702 -0.123 -1.125 1.332 sum 3.300 -20.351 10.100 22.958 Atomic orbital electron populations 1.21376 0.84827 1.00468 0.97357 1.43986 1.00412 1.02147 1.85889 1.18908 0.99827 0.83762 1.35171 0.89378 1.25181 0.97963 0.95085 0.99676 1.69901 1.43786 0.97185 1.44120 0.87047 0.82900 0.75546 0.82987 1.21616 1.23506 1.20681 1.21403 0.97016 0.88453 0.93634 1.22975 0.93952 0.85809 0.96214 0.89954 1.86583 1.32807 1.58875 1.55668 1.22340 1.02455 0.97334 0.82083 1.47769 1.22739 1.50002 1.14350 1.21754 0.91874 0.93457 0.99323 1.20543 0.80881 0.80214 0.87802 1.90666 1.41282 1.36031 1.72459 1.21703 1.00027 1.01566 0.93550 1.22341 0.92990 1.01206 0.94690 1.22950 0.97839 0.99544 0.96781 1.22823 0.96411 1.01689 0.97080 1.22979 0.96717 1.01515 0.96444 0.97579 0.95327 0.92076 0.92982 0.93800 0.92280 0.78280 0.90459 0.89757 0.92918 0.91171 0.91054 0.89023 0.89469 0.88027 0.90678 0.91195 0.90205 0.91736 0.91441 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.36 8.33 59.84 0.50 2.86 16 2 N -0.60 -14.58 2.68 -181.12 -0.48 -15.07 16 3 C -0.25 -7.13 9.47 -15.06 -0.14 -7.27 16 4 H 0.09 2.70 7.73 -52.49 -0.41 2.29 16 5 C 0.02 0.57 5.17 -17.43 -0.09 0.48 16 6 N -0.91 -28.79 13.97 55.49 0.78 -28.02 16 7 Si 0.88 23.15 24.04 -169.99 -4.09 19.06 16 8 H -0.29 -7.25 6.37 56.52 0.36 -6.89 16 9 H -0.31 -8.17 7.11 56.52 0.40 -7.77 16 10 H -0.28 -7.25 6.90 56.52 0.39 -6.86 16 11 C 0.12 2.34 5.41 -4.04 -0.02 2.32 16 12 C 0.07 1.27 3.48 -26.73 -0.09 1.18 16 13 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 14 O -0.54 -11.24 11.22 -42.99 -0.48 -11.72 16 15 C 0.08 1.10 5.11 -4.04 -0.02 1.08 16 16 N -0.61 -7.63 2.86 -181.57 -0.52 -8.15 16 17 C 0.08 0.67 10.24 59.84 0.61 1.28 16 18 C 0.52 7.17 7.30 -10.99 -0.08 7.09 16 19 O -0.53 -9.29 14.34 -2.20 -0.03 -9.32 16 20 C -0.13 -1.30 4.08 -27.88 -0.11 -1.41 16 21 C -0.09 -0.99 3.11 -89.81 -0.28 -1.27 16 22 C -0.13 -1.32 7.65 -25.83 -0.20 -1.52 16 23 C -0.14 -1.20 8.09 -25.83 -0.21 -1.41 16 24 C -0.14 -1.16 7.65 -25.91 -0.20 -1.36 16 25 H 0.01 0.14 5.78 -51.93 -0.30 -0.16 16 26 H 0.03 0.54 8.11 -51.93 -0.42 0.12 16 27 H 0.06 1.50 5.76 -51.93 -0.30 1.20 16 28 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 29 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 30 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 31 H 0.37 7.59 8.75 45.56 0.40 7.99 16 32 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.08 1.24 7.42 -51.93 -0.39 0.85 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.50 6.44 -51.93 -0.33 0.16 16 36 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 37 H 0.09 0.83 7.40 -51.93 -0.38 0.45 16 38 H 0.09 0.69 7.84 -51.93 -0.41 0.28 16 39 H 0.10 1.34 7.73 -51.93 -0.40 0.94 16 40 H 0.07 0.66 7.92 -51.93 -0.41 0.25 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -34.96 352.95 -7.02 -41.98 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.17 Total: 3.87 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.33 Total: 2.05 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.23 Total: -51.23 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.51 Total: -21.05 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.09 Total: 19.06 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.96 -7.02 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755799942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.113 kcal (2) G-P(sol) polarization free energy of solvation -34.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds