Wall clock time and date at job start Tue Mar 31 2020 02:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99725 * 2 1 4 4 C 1.50696 * 109.47314 * 269.99857 * 3 2 1 5 5 H 1.08007 * 119.99982 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00248 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99940 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99876 * 359.97438 * 6 4 3 9 9 H 1.48495 * 109.46876 * 90.00206 * 8 6 4 10 10 H 1.48504 * 109.46886 * 210.00210 * 8 6 4 11 11 H 1.48496 * 109.47270 * 330.00253 * 8 6 4 12 12 C 1.38908 * 120.00255 * 179.97438 * 2 1 3 13 13 C 1.39359 * 119.88529 * 359.97438 * 12 2 1 14 14 C 1.36502 * 120.11465 * 180.02562 * 13 12 2 15 15 C 1.40310 * 119.88473 * 359.97438 * 14 13 12 16 16 C 1.46327 * 120.11503 * 179.97438 * 15 14 13 17 17 C 1.37866 * 120.00343 * 136.15092 * 16 15 14 18 18 C 1.43196 * 120.00533 * 169.53314 * 17 16 15 19 19 N 8.93299 * 127.35772 * 184.41541 * 2 1 3 20 20 C 1.47093 * 119.99582 * 349.53667 * 17 16 15 21 21 N 1.34775 * 119.99773 * 172.70202 * 20 17 16 22 22 O 1.21648 * 120.00179 * 352.98238 * 20 17 16 23 23 C 1.40317 * 119.77089 * 0.27735 * 15 14 13 24 24 C 1.36498 * 119.88311 * 359.43830 * 23 15 14 25 25 H 1.09000 * 109.47249 * 269.99848 * 1 2 3 26 26 H 1.08994 * 109.47340 * 30.00448 * 1 2 3 27 27 H 1.09005 * 109.46540 * 150.00309 * 1 2 3 28 28 H 1.09007 * 109.47241 * 29.99860 * 3 2 1 29 29 H 1.09002 * 109.47084 * 149.99946 * 3 2 1 30 30 H 0.97009 * 119.99877 * 179.97438 * 7 6 4 31 31 H 1.07997 * 119.93905 * 0.02562 * 13 12 2 32 32 H 1.08004 * 120.05625 * 179.97438 * 14 13 12 33 33 H 1.08008 * 119.99849 * 316.15365 * 16 15 14 34 34 H 0.97001 * 120.00083 * 0.02562 * 21 20 17 35 35 H 0.97003 * 120.00080 * 179.97438 * 21 20 17 36 36 H 1.08001 * 120.06012 * 179.72941 * 23 15 14 37 37 H 1.07997 * 119.94676 * 180.28201 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.3456 3.2574 -2.9126 8 14 3.7337 3.9288 -0.2529 9 1 5.1068 3.5070 0.1237 10 1 3.7496 5.3555 -0.6648 11 1 2.8272 3.7597 0.9111 12 6 2.1596 -1.2029 0.0005 13 6 1.4605 -2.4085 0.0016 14 6 2.1383 -3.5933 0.0027 15 6 3.5414 -3.5960 0.0021 16 6 4.2731 -4.8632 0.0038 17 6 5.3632 -5.0310 -0.8234 18 6 6.2120 -6.1736 -0.6667 19 7 6.8855 -7.0794 -0.5466 20 6 5.6543 -4.0362 -1.8671 21 7 6.7966 -4.1194 -2.5775 22 8 4.8665 -3.1354 -2.0855 23 6 4.2405 -2.3794 0.0064 24 6 3.5532 -1.2001 -0.0005 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3632 -0.8901 -0.5138 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1385 0.5139 30 1 3.8224 4.0834 -3.0899 31 1 0.3805 -2.4052 0.0016 32 1 1.5955 -4.5270 0.0039 33 1 3.9592 -5.6672 0.6532 34 1 7.4266 -4.8355 -2.4008 35 1 6.9885 -3.4636 -3.2660 36 1 5.3205 -2.3761 0.0104 37 1 4.0903 -0.2631 -0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016188488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:56 Heat of formation + Delta-G solvation = 34.273637 kcal Electronic energy + Delta-G solvation = -21446.716981 eV Core-core repulsion = 18189.274423 eV Total energy + Delta-G solvation = -3257.442558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07930 -40.04089 -37.77175 -37.40646 -34.87570 -34.56067 -34.02770 -32.11200 -30.67760 -29.75453 -27.13325 -25.28408 -23.83881 -22.86961 -22.40071 -20.92757 -19.48347 -19.08213 -18.35695 -17.90012 -16.85292 -16.57353 -16.09083 -15.92891 -15.74848 -15.22991 -15.10068 -14.78832 -14.61096 -14.50869 -14.27228 -14.09842 -14.06519 -13.73833 -13.36228 -13.24042 -13.11068 -12.64405 -12.45395 -12.41219 -12.03219 -11.75029 -11.54723 -11.28350 -10.82598 -10.71583 -10.59790 -9.90061 -9.51249 -8.32323 -7.81071 -6.38128 -0.51390 0.88526 1.07070 1.34711 1.35980 1.46199 1.57614 1.73593 2.31105 2.51410 2.62182 2.66145 2.93125 3.01571 3.21178 4.00411 4.08567 4.09398 4.23490 4.38930 4.59785 4.65304 4.70009 4.78061 4.84039 4.88893 4.95291 5.03827 5.13812 5.30559 5.45731 5.63600 5.67698 5.84795 5.92819 6.08078 6.20371 6.42420 6.45344 6.57749 6.69057 6.84253 7.26733 7.38667 8.85259 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.004577 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.550150 B = 6116.504799 C = 7078.145249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.617 5.617 3 C 0.228 3.772 4 C -0.537 4.537 5 H 0.022 0.978 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.947 3.053 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.239 1.239 12 C 0.242 3.758 13 C -0.237 4.237 14 C -0.018 4.018 15 C -0.192 4.192 16 C 0.134 3.866 17 C -0.182 4.182 18 C 0.285 3.715 19 N -0.456 5.456 20 C 0.563 3.437 21 N -0.843 5.843 22 O -0.551 6.551 23 C 0.022 3.978 24 C -0.235 4.235 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.031 0.969 30 H 0.267 0.733 31 H 0.140 0.860 32 H 0.162 0.838 33 H 0.186 0.814 34 H 0.406 0.594 35 H 0.410 0.590 36 H 0.110 0.890 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 -16.086 9.152 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.321 5.321 3 C 0.105 3.895 4 C -0.576 4.576 5 H 0.041 0.959 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.769 3.231 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.162 1.162 12 C 0.134 3.866 13 C -0.259 4.259 14 C -0.036 4.036 15 C -0.195 4.195 16 C 0.111 3.889 17 C -0.189 4.189 18 C -0.028 4.028 19 N -0.133 5.133 20 C 0.349 3.651 21 N -0.406 5.406 22 O -0.429 6.429 23 C 0.002 3.998 24 C -0.258 4.258 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.180 0.820 33 H 0.203 0.797 34 H 0.236 0.764 35 H 0.242 0.758 36 H 0.128 0.872 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.685 -16.601 9.197 18.991 hybrid contribution 0.785 1.493 -0.775 1.856 sum 1.470 -15.108 8.422 17.359 Atomic orbital electron populations 1.21754 0.78647 1.02854 1.01875 1.46714 1.06163 1.03667 1.75508 1.19413 0.92796 0.82442 0.94817 1.21637 1.36595 1.06701 0.92618 0.95920 1.25885 0.95442 0.98808 0.98516 1.70078 1.42673 1.24372 1.21504 0.85731 0.79862 0.77741 0.79753 1.19196 1.20577 1.16246 1.18479 0.91608 0.86726 0.89792 1.20509 1.00443 0.90553 1.14443 1.21008 0.92078 0.98215 0.92322 1.18502 0.93845 0.91754 1.15415 1.23301 0.85067 0.94124 0.86420 1.17843 1.01768 0.94176 1.05130 1.25301 0.92709 0.92030 0.92765 1.81282 1.10743 1.11552 1.09737 1.18018 0.81591 0.83950 0.81576 1.43749 1.21746 1.34261 1.40858 1.91087 1.48013 1.35350 1.68472 1.20592 0.98389 0.91199 0.89596 1.20363 0.93126 0.98683 1.13611 0.91205 0.92517 0.90309 0.94173 0.95079 0.92359 0.84218 0.82004 0.79689 0.76429 0.75844 0.87235 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.86 10.17 127.77 1.30 4.16 16 2 N -0.62 -24.97 2.97 -726.42 -2.16 -27.12 16 3 C 0.23 10.64 3.96 85.63 0.34 10.98 16 4 C -0.54 -31.04 9.94 25.60 0.25 -30.78 16 5 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 6 C 0.01 0.66 5.47 84.65 0.46 1.13 16 7 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 8 Si 0.95 42.83 27.47 68.60 1.88 44.71 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 12 C 0.24 9.25 6.55 38.56 0.25 9.51 16 13 C -0.24 -7.01 9.13 22.13 0.20 -6.81 16 14 C -0.02 -0.42 9.75 22.37 0.22 -0.20 16 15 C -0.19 -4.92 4.58 -20.16 -0.09 -5.02 16 16 C 0.13 2.32 9.52 24.29 0.23 2.55 16 17 C -0.18 -3.60 5.75 -19.80 -0.11 -3.71 16 18 C 0.29 5.52 14.21 88.34 1.25 6.77 16 19 N -0.46 -10.36 18.53 18.99 0.35 -10.01 16 20 C 0.56 14.42 7.09 86.57 0.61 15.03 16 21 N -0.84 -16.32 8.82 -176.11 -1.55 -17.87 16 22 O -0.55 -19.69 13.08 -4.18 -0.05 -19.75 16 23 C 0.02 0.71 6.57 22.37 0.15 0.86 16 24 C -0.24 -9.47 9.13 22.13 0.20 -9.26 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.06 1.91 8.07 -2.39 -0.02 1.89 16 27 H 0.08 2.14 6.17 -2.38 -0.01 2.13 16 28 H 0.04 1.78 7.13 -2.38 -0.02 1.76 16 29 H 0.03 1.45 5.59 -2.39 -0.01 1.43 16 30 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 31 H 0.14 3.44 6.11 -2.91 -0.02 3.42 16 32 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.41 6.03 7.73 -92.71 -0.72 5.31 16 35 H 0.41 7.58 8.93 -92.71 -0.83 6.75 16 36 H 0.11 3.45 7.05 -2.91 -0.02 3.43 16 37 H 0.10 4.39 6.11 -2.91 -0.02 4.37 16 Total: -1.00 -77.10 320.94 3.58 -73.52 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -0.46 Total: 20.52 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.27 Total: -4.80 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -3.06 Total: -114.21 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.05 Total: -19.75 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.71 kcal Total: -77.10 3.58 -73.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016188488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.796 kcal (2) G-P(sol) polarization free energy of solvation -77.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds