Wall clock time and date at job start Tue Mar 31 2020 02:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47067 * 120.04225 * 3 2 1 5 5 N 1.46900 * 109.47246 * 179.69615 * 4 3 2 6 6 C 1.46899 * 110.99997 * 288.28482 * 5 4 3 7 7 C 1.50697 * 109.46783 * 160.34969 * 6 5 4 8 8 H 1.07995 * 120.00288 * 4.64837 * 7 6 5 9 9 C 1.37878 * 119.99779 * 184.64496 * 7 6 5 10 10 N 1.31516 * 120.00360 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99968 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46933 * 60.00524 * 11 9 7 13 13 H 1.48501 * 109.47266 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47575 * 300.00236 * 11 9 7 15 15 C 1.46897 * 110.99741 * 164.33248 * 5 4 3 16 16 N 1.46505 * 109.46901 * 293.95251 * 15 5 4 17 17 N 1.40279 * 126.75570 * 269.99845 * 16 15 5 18 18 N 1.28644 * 109.42715 * 180.02562 * 17 16 15 19 19 C 1.34795 * 110.31749 * 0.02562 * 18 17 16 20 20 C 1.40129 * 133.15092 * 180.02562 * 19 18 17 21 21 C 1.36420 * 119.79710 * 180.24758 * 20 19 18 22 22 C 1.38907 * 120.74479 * 359.44621 * 21 20 19 23 23 C 1.36662 * 120.58641 * 0.55855 * 22 21 20 24 24 C 1.37454 * 126.75301 * 90.00685 * 16 15 5 25 25 H 1.08994 * 109.46968 * 0.04297 * 3 2 1 26 26 H 1.09000 * 109.47095 * 240.04259 * 3 2 1 27 27 H 1.08999 * 109.46728 * 59.69605 * 4 3 2 28 28 H 1.08996 * 109.47180 * 299.70123 * 4 3 2 29 29 H 1.08993 * 109.47349 * 280.35303 * 6 5 4 30 30 H 1.09008 * 109.46838 * 40.35104 * 6 5 4 31 31 H 0.96993 * 120.00449 * 179.97438 * 10 9 7 32 32 H 1.09005 * 109.47014 * 173.95905 * 15 5 4 33 33 H 1.08996 * 109.47243 * 53.95214 * 15 5 4 34 34 H 1.07998 * 120.10593 * 359.97438 * 20 19 18 35 35 H 1.08001 * 119.62216 * 179.69980 * 21 20 19 36 36 H 1.07997 * 119.70253 * 180.30396 * 22 21 20 37 37 H 1.07997 * 120.09847 * 179.70149 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.7231 -1.2487 5 7 4.5867 0.7301 -1.2451 6 6 5.1062 1.6463 -0.2210 7 6 6.5363 1.2897 0.0929 8 1 7.0356 0.5146 -0.4696 9 6 7.2075 1.9531 1.0981 10 7 6.5994 2.8967 1.7834 11 14 8.9800 1.5107 1.4877 12 1 9.8220 1.7354 0.2853 13 1 9.4695 2.3623 2.6015 14 1 9.0576 0.0824 1.8865 15 6 5.1147 1.0708 -2.5729 16 7 4.7736 0.0077 -3.5215 17 7 5.5390 -1.1297 -3.8185 18 7 4.9257 -1.8405 -4.6981 19 6 3.7589 -1.2582 -5.0396 20 6 2.7371 -1.6102 -5.9316 21 6 1.6499 -0.7982 -6.0715 22 6 1.5368 0.3711 -5.3303 23 6 2.5196 0.7367 -4.4539 24 6 3.6406 -0.0713 -4.2958 25 1 2.9718 -1.0268 -0.0008 26 1 2.9711 0.5140 0.8904 27 1 2.7494 1.7490 -1.2506 28 1 2.7590 0.2067 -2.1391 29 1 5.0600 2.6700 -0.5922 30 1 4.5033 1.5601 0.6831 31 1 7.0714 3.3631 2.4908 32 1 6.1984 1.1741 -2.5174 33 1 4.6767 2.0109 -2.9079 34 1 2.8121 -2.5193 -6.5097 35 1 0.8663 -1.0698 -6.7633 36 1 0.6664 0.9990 -5.4509 37 1 2.4258 1.6500 -3.8852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021540570.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:26 Heat of formation + Delta-G solvation = 151.195219 kcal Electronic energy + Delta-G solvation = -21812.129017 eV Core-core repulsion = 18592.049311 eV Total energy + Delta-G solvation = -3220.079706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.96143 -37.90752 -37.56605 -36.29585 -33.78116 -32.79077 -31.29090 -30.33168 -29.91605 -27.42246 -25.64079 -23.83186 -23.42486 -22.44654 -21.49397 -20.08849 -17.82182 -17.68662 -16.96214 -16.69947 -15.86146 -15.57554 -15.06979 -14.82001 -14.56838 -14.45081 -14.09378 -13.92547 -13.17028 -13.05445 -12.44550 -12.34597 -12.24977 -12.20152 -12.06005 -11.88647 -11.76132 -11.45977 -11.29285 -10.99634 -10.86345 -10.73330 -10.61120 -10.56633 -10.04984 -9.50419 -8.80101 -8.61110 -8.35770 -7.82670 -6.21087 -4.24435 0.54682 1.32204 2.27200 2.36961 2.85131 2.92379 3.26482 3.31229 3.34958 3.62852 3.96878 4.14182 4.32064 4.59576 4.68701 4.71100 4.81439 5.08113 5.12015 5.15113 5.16624 5.25037 5.39105 5.57401 5.61926 5.69174 5.83955 5.98031 6.07334 6.07740 6.24317 6.29442 6.56831 6.69996 6.71119 6.96617 7.49379 7.59167 7.68795 7.85435 8.15823 8.23449 8.83246 9.42213 10.88806 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.005199 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.725742 B = 5384.040798 C = 6639.916025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.218 3.782 3 C -0.025 4.025 4 C 0.050 3.950 5 N -0.542 5.542 6 C 0.195 3.805 7 C -0.518 4.518 8 H 0.067 0.933 9 C 0.062 3.938 10 N -0.896 5.896 11 Si 0.899 3.101 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.304 3.696 16 N -0.374 5.374 17 N 0.017 4.983 18 N -0.237 5.237 19 C -0.020 4.020 20 C -0.038 4.038 21 C -0.140 4.140 22 C -0.075 4.075 23 C -0.120 4.120 24 C 0.085 3.915 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.040 0.960 28 H 0.070 0.930 29 H -0.001 1.001 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.129 0.871 33 H 0.066 0.934 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.109 -2.910 -12.287 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.100 4.100 3 C -0.065 4.065 4 C -0.080 4.080 5 N -0.269 5.269 6 C 0.071 3.929 7 C -0.556 4.556 8 H 0.085 0.915 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.727 3.273 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.200 1.200 15 C 0.094 3.906 16 N -0.169 5.169 17 N 0.037 4.963 18 N -0.115 5.115 19 C -0.145 4.145 20 C -0.060 4.060 21 C -0.161 4.161 22 C -0.097 4.097 23 C -0.142 4.142 24 C -0.038 4.038 25 H 0.132 0.868 26 H 0.138 0.862 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.017 0.983 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.235 -3.930 -11.609 14.766 hybrid contribution 0.285 1.294 0.199 1.340 sum -7.949 -2.636 -11.410 14.154 Atomic orbital electron populations 1.81164 1.13066 1.09589 1.09190 1.29350 0.95376 0.92554 0.92702 1.19308 0.80351 1.05142 1.01729 1.22097 0.90152 0.98775 0.96931 1.62017 1.04586 1.56040 1.04249 1.19877 0.96499 0.88206 0.88296 1.21083 0.96104 1.20182 1.18275 0.91456 1.24947 0.98606 0.94814 0.95719 1.69915 1.37387 1.23736 1.22409 0.86530 0.84240 0.78586 0.77957 1.20129 1.21367 1.19985 1.22301 1.03220 0.82774 0.82287 1.50749 1.14008 1.20128 1.32017 1.81744 1.15002 0.90885 1.08684 1.74647 1.05307 1.22742 1.08768 1.19890 0.96285 0.94802 1.03477 1.20178 0.90922 0.99491 0.95430 1.20684 0.98497 0.95411 1.01536 1.20796 0.97896 0.96567 0.94446 1.19905 0.92259 1.00145 1.01874 1.19456 0.90763 0.98082 0.95494 0.86777 0.86224 0.94142 0.91156 0.98327 0.93415 0.92581 0.85334 0.91663 0.84817 0.85018 0.84929 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.44 18.54 42.16 0.78 -6.66 16 2 C 0.22 3.16 15.43 -20.76 -0.32 2.84 16 3 C -0.02 -0.34 5.77 -29.52 -0.17 -0.51 16 4 C 0.05 0.73 4.73 -3.82 -0.02 0.72 16 5 N -0.54 -9.50 4.52 -239.98 -1.09 -10.59 16 6 C 0.20 4.14 4.59 -4.98 -0.02 4.12 16 7 C -0.52 -12.68 8.61 -34.44 -0.30 -12.98 16 8 H 0.07 1.67 7.66 -52.49 -0.40 1.27 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -23.97 13.29 55.43 0.74 -23.23 16 11 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 C 0.30 4.92 6.07 -63.31 -0.38 4.54 16 16 N -0.37 -6.05 3.67 -61.72 -0.23 -6.28 16 17 N 0.02 0.31 13.73 60.35 0.83 1.13 16 18 N -0.24 -4.04 12.36 32.07 0.40 -3.65 16 19 C -0.02 -0.29 7.26 -84.98 -0.62 -0.91 16 20 C -0.04 -0.43 10.06 -39.53 -0.40 -0.82 16 21 C -0.14 -1.28 9.96 -39.99 -0.40 -1.68 16 22 C -0.08 -0.71 9.97 -39.90 -0.40 -1.11 16 23 C -0.12 -1.39 8.61 -39.84 -0.34 -1.73 16 24 C 0.08 1.22 5.62 -84.15 -0.47 0.75 16 25 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 26 H 0.12 1.69 6.51 -51.93 -0.34 1.35 16 27 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 28 H 0.07 1.01 4.59 -51.93 -0.24 0.77 16 29 H 0.00 -0.02 8.00 -51.93 -0.42 -0.44 16 30 H 0.05 1.06 6.23 -51.92 -0.32 0.74 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.13 2.25 7.32 -51.93 -0.38 1.87 16 33 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.33 7.97 -52.49 -0.42 0.91 16 LS Contribution 324.19 15.07 4.89 4.89 Total: -1.00 -28.95 324.19 -6.82 -35.77 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.18 Total: -1.19 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -3.94 Total: -5.31 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 1.43 Total: -49.27 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.95 -6.82 -35.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021540570.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.968 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds