Wall clock time and date at job start Tue Mar 31 2020 02:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47067 * 120.04225 * 3 2 1 5 5 N 1.46900 * 109.47246 * 179.69615 * 4 3 2 6 6 C 1.46899 * 110.99997 * 288.28482 * 5 4 3 7 7 C 1.50697 * 109.46783 * 160.34969 * 6 5 4 8 8 H 1.07995 * 120.00288 * 4.64837 * 7 6 5 9 9 C 1.37878 * 119.99779 * 184.64496 * 7 6 5 10 10 N 1.31516 * 120.00360 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99968 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46933 * 60.00524 * 11 9 7 13 13 H 1.48501 * 109.47266 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47575 * 300.00236 * 11 9 7 15 15 C 1.46897 * 110.99741 * 164.33248 * 5 4 3 16 16 N 1.46505 * 109.46901 * 293.95251 * 15 5 4 17 17 N 1.40279 * 126.75570 * 269.99845 * 16 15 5 18 18 N 1.28644 * 109.42715 * 180.02562 * 17 16 15 19 19 C 1.34795 * 110.31749 * 0.02562 * 18 17 16 20 20 C 1.40129 * 133.15092 * 180.02562 * 19 18 17 21 21 C 1.36420 * 119.79710 * 180.24758 * 20 19 18 22 22 C 1.38907 * 120.74479 * 359.44621 * 21 20 19 23 23 C 1.36662 * 120.58641 * 0.55855 * 22 21 20 24 24 C 1.37454 * 126.75301 * 90.00685 * 16 15 5 25 25 H 1.08994 * 109.46968 * 0.04297 * 3 2 1 26 26 H 1.09000 * 109.47095 * 240.04259 * 3 2 1 27 27 H 1.08999 * 109.46728 * 59.69605 * 4 3 2 28 28 H 1.08996 * 109.47180 * 299.70123 * 4 3 2 29 29 H 1.08993 * 109.47349 * 280.35303 * 6 5 4 30 30 H 1.09008 * 109.46838 * 40.35104 * 6 5 4 31 31 H 0.96993 * 120.00449 * 179.97438 * 10 9 7 32 32 H 1.09005 * 109.47014 * 173.95905 * 15 5 4 33 33 H 1.08996 * 109.47243 * 53.95214 * 15 5 4 34 34 H 1.07998 * 120.10593 * 359.97438 * 20 19 18 35 35 H 1.08001 * 119.62216 * 179.69980 * 21 20 19 36 36 H 1.07997 * 119.70253 * 180.30396 * 22 21 20 37 37 H 1.07997 * 120.09847 * 179.70149 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.7231 -1.2487 5 7 4.5867 0.7301 -1.2451 6 6 5.1062 1.6463 -0.2210 7 6 6.5363 1.2897 0.0929 8 1 7.0356 0.5146 -0.4696 9 6 7.2075 1.9531 1.0981 10 7 6.5994 2.8967 1.7834 11 14 8.9800 1.5107 1.4877 12 1 9.8220 1.7354 0.2853 13 1 9.4695 2.3623 2.6015 14 1 9.0576 0.0824 1.8865 15 6 5.1147 1.0708 -2.5729 16 7 4.7736 0.0077 -3.5215 17 7 5.5390 -1.1297 -3.8185 18 7 4.9257 -1.8405 -4.6981 19 6 3.7589 -1.2582 -5.0396 20 6 2.7371 -1.6102 -5.9316 21 6 1.6499 -0.7982 -6.0715 22 6 1.5368 0.3711 -5.3303 23 6 2.5196 0.7367 -4.4539 24 6 3.6406 -0.0713 -4.2958 25 1 2.9718 -1.0268 -0.0008 26 1 2.9711 0.5140 0.8904 27 1 2.7494 1.7490 -1.2506 28 1 2.7590 0.2067 -2.1391 29 1 5.0600 2.6700 -0.5922 30 1 4.5033 1.5601 0.6831 31 1 7.0714 3.3631 2.4908 32 1 6.1984 1.1741 -2.5174 33 1 4.6767 2.0109 -2.9079 34 1 2.8121 -2.5193 -6.5097 35 1 0.8663 -1.0698 -6.7633 36 1 0.6664 0.9990 -5.4509 37 1 2.4258 1.6500 -3.8852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021540570.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:25 Heat of formation + Delta-G solvation = 133.377071 kcal Electronic energy + Delta-G solvation = -21812.901670 eV Core-core repulsion = 18592.049311 eV Total energy + Delta-G solvation = -3220.852359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.04607 -39.22171 -38.49640 -37.55758 -35.15047 -34.45929 -32.50105 -31.33035 -30.95762 -29.07181 -26.94809 -25.00420 -24.81677 -23.43530 -22.81975 -21.31127 -18.97469 -18.73492 -18.50503 -18.01636 -17.20240 -16.55551 -16.42740 -16.14848 -15.90114 -15.61246 -15.25186 -15.01926 -14.46563 -14.41920 -13.91845 -13.63721 -13.49384 -13.33027 -13.21945 -13.02820 -12.96525 -12.74077 -12.61265 -12.53384 -12.42088 -12.15214 -11.89930 -11.65610 -11.64779 -11.29532 -10.54425 -9.80034 -9.38610 -9.19203 -8.16252 -6.23341 -0.44278 0.42185 1.13516 1.27569 1.47156 1.48834 1.55700 1.65855 1.73902 2.43744 2.71003 2.78022 3.13791 3.18725 3.41557 3.52391 3.74057 3.92790 3.93922 4.09664 4.23732 4.32121 4.33797 4.44319 4.46659 4.76302 4.77822 4.90934 4.95001 5.12288 5.14931 5.19328 5.41028 5.47918 5.57192 5.72723 5.86858 6.02231 6.11603 6.42728 6.51218 6.90102 7.07026 7.46111 8.92818 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.005199 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.725742 B = 5384.040798 C = 6639.916025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.241 3.759 3 C -0.017 4.017 4 C 0.055 3.945 5 N -0.551 5.551 6 C 0.211 3.789 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.018 3.982 10 N -0.925 5.925 11 Si 0.951 3.049 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.309 3.691 16 N -0.378 5.378 17 N -0.031 5.031 18 N -0.252 5.252 19 C -0.045 4.045 20 C -0.049 4.049 21 C -0.124 4.124 22 C -0.057 4.057 23 C -0.137 4.137 24 C 0.075 3.925 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.051 0.949 28 H 0.078 0.922 29 H -0.013 1.013 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.172 0.828 36 H 0.170 0.830 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.117 -2.921 -13.825 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.076 4.076 3 C -0.057 4.057 4 C -0.074 4.074 5 N -0.278 5.278 6 C 0.085 3.915 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.182 4.182 10 N -0.565 5.565 11 Si 0.778 3.222 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.099 3.901 16 N -0.174 5.174 17 N -0.010 5.010 18 N -0.130 5.130 19 C -0.170 4.170 20 C -0.071 4.071 21 C -0.145 4.145 22 C -0.079 4.079 23 C -0.159 4.159 24 C -0.047 4.047 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.004 0.996 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.170 0.830 35 H 0.190 0.810 36 H 0.187 0.813 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.235 -3.965 -13.168 17.143 hybrid contribution 0.749 1.277 0.519 1.568 sum -9.487 -2.688 -12.649 16.038 Atomic orbital electron populations 1.81189 1.13843 1.10667 1.10192 1.29262 0.95093 0.91554 0.91734 1.19240 0.79809 1.05395 1.01242 1.22101 0.88156 0.99631 0.97560 1.61797 1.06464 1.55184 1.04338 1.19507 0.94887 0.88084 0.88989 1.21377 0.97794 1.19307 1.17587 0.92418 1.25577 1.01686 0.94949 0.95940 1.69997 1.38572 1.24845 1.23108 0.85708 0.80730 0.78101 0.77699 1.19815 1.21213 1.20028 1.22138 1.02210 0.83805 0.81935 1.50582 1.14762 1.19730 1.32336 1.81686 1.16463 0.92325 1.10553 1.74547 1.06486 1.23162 1.08758 1.20403 0.96532 0.95256 1.04828 1.20562 0.90627 1.00824 0.95040 1.21193 0.98179 0.94243 1.00890 1.21334 0.97837 0.96507 0.92192 1.20205 0.91969 1.00533 1.03225 1.19850 0.90921 0.98675 0.95216 0.86158 0.86480 0.93045 0.90398 0.99563 0.94253 0.92715 0.87466 0.89448 0.83019 0.81032 0.81267 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -15.06 18.54 20.01 0.37 -14.69 16 2 C 0.24 6.60 15.43 89.44 1.38 7.99 16 3 C -0.02 -0.43 5.77 28.79 0.17 -0.27 16 4 C 0.05 1.54 4.73 86.30 0.41 1.94 16 5 N -0.55 -19.31 4.52 -913.16 -4.13 -23.44 16 6 C 0.21 9.02 4.59 85.56 0.39 9.41 16 7 C -0.52 -25.95 8.61 25.60 0.22 -25.73 16 8 H 0.06 2.93 7.66 -2.91 -0.02 2.91 16 9 C 0.02 0.91 5.46 84.65 0.46 1.38 16 10 N -0.93 -49.96 13.29 21.45 0.28 -49.67 16 11 Si 0.95 41.66 29.54 68.60 2.03 43.68 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 C 0.31 10.12 6.07 170.81 1.04 11.16 16 16 N -0.38 -12.36 3.67 -349.17 -1.28 -13.64 16 17 N -0.03 -1.16 13.73 37.02 0.51 -0.65 16 18 N -0.25 -8.79 12.36 -52.44 -0.65 -9.43 16 19 C -0.04 -1.28 7.26 39.72 0.29 -0.99 16 20 C -0.05 -0.96 10.06 22.30 0.22 -0.74 16 21 C -0.12 -1.70 9.96 22.01 0.22 -1.48 16 22 C -0.06 -0.82 9.97 22.06 0.22 -0.60 16 23 C -0.14 -2.80 8.61 22.10 0.19 -2.61 16 24 C 0.08 2.10 5.62 39.03 0.22 2.32 16 25 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 26 H 0.12 3.22 6.51 -2.39 -0.02 3.21 16 27 H 0.05 1.35 8.06 -2.39 -0.02 1.33 16 28 H 0.08 2.10 4.59 -2.39 -0.01 2.09 16 29 H -0.01 -0.60 8.00 -2.39 -0.02 -0.62 16 30 H 0.04 1.76 6.23 -2.38 -0.01 1.75 16 31 H 0.26 13.72 8.31 -92.71 -0.77 12.94 16 32 H 0.11 3.92 7.32 -2.38 -0.02 3.91 16 33 H 0.09 2.43 8.12 -2.39 -0.02 2.41 16 34 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 36 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 37 H 0.14 2.48 7.97 -2.91 -0.02 2.46 16 Total: -1.00 -63.69 324.19 3.66 -60.04 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.10 Total: 6.04 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 5.43 Total: 1.77 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.90 Total: -111.53 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -63.69 3.66 -60.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021540570.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.412 kcal (2) G-P(sol) polarization free energy of solvation -63.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds